ViewGene
Locus Name:
GeneID:
Location:

GeneID:1227
TrivialName: PA14_09850
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09850
PAO1 Ortholog Locus:PA4179
Sequence Length:1296
Protein Length:431
Start: 847765
Stop: 846470
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07566.1|AE004834_6 (AE004834) probable porin [Pseudomonas aeruginosa PAO1]
Identities = 427/431 (99%), Positives = 430/431 (99%)
Sequence:
ATGTCCGCCCCGTTTTCCCCCCGTTCGCCCCGCACCCTTCGCGGCCTGGGCGCCCTCGCCCTGTGCGGCGGA
TTCGTCGCCCCGGCCCCTGCCGCCTTCCTCGAGGACGGCAGCGCGCGCCTGGAAGCGCGCACCGTCTACTTC
AACCGCGACTTCCGCGACGGCAGCTCGGCCAACCCGCAGGGCGCCTCCAAGCGCGAGGAAGCCGCGCAGGGC
TTCATCCTCGACCTGCGCTCGGGCTATACCGAGGGCGCGCTGGGCTTCGGCGTGGATACCCTGGCGATGCTC
GGGATCAAGCTCGACTCCAGCCCCGCGGACAGCAACAGCGGCCTGCTGCCTTCCAGCGGCCACGATCCGCGT
CGCTCGGTCGACCAGTACGCCAAGGCCGGCGTCGCCGGCAAGATGCGCTTCTCGCAGACACAGTTCAGATAC
GGCGCGATGCTGCCGGACATGCCGTTGCTGAAATACAACGACGGACGCCTGCTGCCGACCCTGTTCCACGGC
GCCCAGCTGACCAGCGAGGAGATCGCCGGGCTCAGGCTCTCCGCCACCCGCCTGGAGCGCTACACCGCGCGG
GACTCCAGCGATGCCCAGGACATCCGCCTGCACTGCAAGAACAAACGCTACGCCTGCGACACCACCGGCAAC
CGCTTCGACGCCTACCAACTCGACTACCAGGTCAACGACGGCCTGCTGTTGCAATACGCCCAGGGCGGCCTG
CGCAACGTCTATCGCCAGCGCTACCTCGGTGCCGTGGGCAAGCGGCAGCTCGGCGCCGGCAAGCTGAGCGCC
GACCTGCGCTGGTTCGACAGCGAGGACGCCGGCGCGGCCCGCGCCGGCAAGATCGACAACCGCGCCCTCAGC
CTGCTGCTCGCCTACGCCCAGGGCGGCCACACGCTCAGCGCCGGCTGGCAGCGGATGAACGGCGCCAGCTCG
ATGCCCTACCTCGACGGCAGCAATCCGTACCTGGCCAACTACCTGCAGGTGAACGACTTCGCCAACCCCGAG
GAACGCTCCTGGCAACTGCGCTACGACTTCGACCTGCGCAGCGTCGGCGTGCCCGGCCTGAGCTTCATGACC
CGCTACGTCAACGGCGACCATATCCGCCTGGCCAACGGCGACGAGGGCAAGGAATGGGAGCGCGACATCGAG
CTGAAGTACGTGGTGCAGAGCGGCCGCTTCAAGGACCTCAGCCTGCGCCTGCGCAACGCCACCTACCGCACC
GACTTCGAGCGCTCGGCGCGCGACGTGGACGAGGTGCGCCTGATCGCCAGCTACAACCTGTCGCTGTTCTGA
Translation:
MSAPFSPRSPRTLRGLGALALCGGFVAPAPAAFLEDGSARLEARTVYFNRDFRDGSSANPQGASKREEAAQG
FILDLRSGYTEGALGFGVDTLAMLGIKLDSSPADSNSGLLPSSGHDPRRSVDQYAKAGVAGKMRFSQTQFRY
GAMLPDMPLLKYNDGRLLPTLFHGAQLTSEEIAGLRLSATRLERYTARDSSDAQDIRLHCKNKRYACDTTGN
RFDAYQLDYQVNDGLLLQYAQGGLRNVYRQRYLGAVGKRQLGAGKLSADLRWFDSEDAGAARAGKIDNRALS
LLLAYAQGGHTLSAGWQRMNGASSMPYLDGSNPYLANYLQVNDFANPEERSWQLRYDFDLRSVGVPGLSFMT
RYVNGDHIRLANGDEGKEWERDIELKYVVQSGRFKDLSLRLRNATYRTDFERSARDVDEVRLIASYNLSLF*
AnnotationID:1236GeneID:1227
AnnotatorUID: diggins
Modification Date/Time: 2005-03-31 08:08:13
Gene Name:
Confidence Code:3
GeneProduct:putative porin
Cell Localization:()
Synonyms:opdN
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03573
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69358.1|AE016573_3 (AE016788) porin, putative [Pseudomonas putida KT2440]
          Length = 433

 Score =  558 bits (1439), Expect = e-158
 Identities = 275/432 (63%), Positives = 334/432 (77%), Gaps = 4/432 (0%)

>gb|AAO56439.1| (AE016866) outer membrane porin, OprD family [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 440

 Score =  280 bits (717), Expect = 9e-75
 Identities = 168/444 (37%), Positives = 251/444 (56%), Gaps = 19/444 (4%)








 
Structural Features:
pfam03573, OprD, outer membrane porin, OprD family. 
CD-Length = 449 residues,  95.5% aligned
Score =  272 bits (697), Expect = 4e-74
Identities = 148/433 (34%), Positives = 208/433 (48%), Gaps = 44/433 (10%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2457




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19600




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36909




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1227_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1227
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2222
                           PA4179_tr
                           translation of PA4179
                           431
                           99.07
                           99.76
                           0
                           2222.0
     

     
     
73537
                           gb|AAG07566.1|AE004834_6
                           (AE004834) probable porin [Pseudomonas aeruginosa PAO1]
                           431
                           99.07
                           99.76
                           0
                           2222.0
     

     
     
73538
                           gb|AAN69358.1|AE016573_3
                           (AE016788) porin, putative [Pseudomonas putida KT2440]
                           437
                           63.38
                           77.11
                           10
                           1446.0
     

     
     
73539
                           gb|AAN67041.1|AE016333_2
                           (AE016779) porin, putative [Pseudomonas putida KT2440]
                           441
                           49.65
                           69.84
                           22
                           1093.0
     

     
     
2223
                           PA0755_tr
                           translation of PA0755
                           442
                           48.86
                           66.74
                           26
                           1065.0
     

     






      

          
GC ORFID: 44229How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4179Glimmer Score: 

          
Start: 4106172Stop: 4107467

          
Length: 1296


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4179 translation of PA4179Homolog Bit Score 860.0

          
Other Homologs:  t_PA0755 (ORF: BLASTX 406.0), t_PA3038 (ORF: BLASTX 337.0), t_PA2213 (ORF: BLASTX 337.0), t_PA1025 (ORF: BLASTX 336.0), t_PA3588 (ORF: BLASTX 335.0), t_PA2113 (ORF: BLASTX 320.0), t_PA4137 (ORF: BLASTX 303.0), t_PA0291 (ORF: BLASTX 302.0), t_PA0240 (ORF: BLASTX 291.0), t_PA4898 (ORF: BLASTX 280.0), t_PA4179 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCGCCCCGTTTTCCCCCCGTTCGCCCCGCACCCTTCGCGGCCTGGGCGCCCTCGCCCTGTGCGGCGGA 
TTCGTCGCCCCGGCCCCTGCCGCCTTCCTCGAGGACGGCAGCGCGCGCCTGGAAGCGCGCACCGTCTACTTC 
AACCGCGACTTCCGCGACGGCAGCTCGGCCAACCCGCAGGGCGCCTCCAAGCGCGAGGAAGCCGCGCAGGGC 
TTCATCCTCGACCTGCGCTCGGGCTATACCGAGGGCGCGCTGGGCTTCGGCGTGGATACCCTGGCGATGCTC 
GGGATCAAGCTCGACTCCAGCCCCGCGGACAGCAACAGCGGCCTGCTGCCTTCCAGCGGCCACGATCCGCGT 
CGCTCGGTCGACCAGTACGCCAAGGCCGGCGTCGCCGGCAAGATGCGCTTCTCGCAGACACAGTTCAGATAC 
GGCGCGATGCTGCCGGACATGCCGTTGCTGAAATACAACGACGGACGCCTGCTGCCGACCCTGTTCCACGGC 
GCCCAGCTGACCAGCGAGGAGATCGCCGGGCTCAGGCTCTCCGCCACCCGCCTGGAGCGCTACACCGCGCGG 
GACTCCAGCGATGCCCAGGACATCCGCCTGCACTGCAAGAACAAACGCTACGCCTGCGACACCACCGGCAAC 
CGCTTCGACGCCTACCAACTCGACTACCAGGTCAACGACGGCCTGCTGTTGCAATACGCCCAGGGCGGCCTG 
CGCAACGTCTATCGCCAGCGCTACCTCGGTGCCGTGGGCAAGCGGCAGCTCGGCGCCGGCAAGCTGAGCGCC 
GACCTGCGCTGGTTCGACAGCGAGGACGCCGGCGCGGCCCGCGCCGGCAAGATCGACAACCGCGCCCTCAGC 
CTGCTGCTCGCCTACGCCCAGGGCGGCCACACGCTCAGCGCCGGCTGGCAGCGGATGAACGGCGCCAGCTCG 
ATGCCCTACCTCGACGGCAGCAATCCGTACCTGGCCAACTACCTGCAGGTGAACGACTTCGCCAACCCCGAG 
GAACGCTCCTGGCAACTGCGCTACGACTTCGACCTGCGCAGCGTCGGCGTGCCCGGCCTGAGCTTCATGACC 
CGCTACGTCAACGGCGACCATATCCGCCTGGCCAACGGCGACGAGGGCAAGGAATGGGAGCGCGACATCGAG 
CTGAAGTACGTGGTGCAGAGCGGCCGCTTCAAGGACCTCAGCCTGCGCCTGCGCAACGCCACCTACCGCACC 
GACTTCGAGCGCTCGGCGCGCGACGTGGACGAGGTGCGCCTGATCGCCAGCTACAACCTGTCGCTGTTCTGA