ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1226

TrivialName: PA14_10210

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_10210

PAO1 Ortholog Locus: PA4155

Sequence Length: 1308

Protein Length: 435

Start: 877549

Stop: 878856

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG07542.1|AE004832_2 (AE004832) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 433/435 (99%), Positives = 434/435 (99%)

Sequence:

ATGAGTACCCCGAAACGCCTGCACATCGGCATGTCGCTGGCCCCCACCTGGCTCAGCGGCGATGCCTGGCGG
CGCCCCGACAGCAACATCGAAGGCATCTTCGGCAGCGATTTCGCCGTCGACATCGCCAGGCGCTCCGAAGCC
GCCCACCTCGACTTCGTGTTTCGCCCGGACGTCAGCAGCCTGCCACTGGATGTGCTGGAGACCGGCTCCGGC
TTCGCCAGCCTGGATCCCACCGTACTGCTTGCCGCGGTCGCCCGCGAAACCTCGCGGATCGGCCTGGTGTCG
ACGGTCTCCACCACGTTCTATCCGCCCTACGTGGTGGCCCGGCAGCTGCAATCGCTGCACTGGATCAGCGAC
GGCCGCGCCGGCTGGAACATCGTCACCGCGCTGCAGGGCCACGAGAACTTCGGCCTGGACGCGATGCCCGAT
GCGGAGCAGCGCTACGCGCGCGCCGCCGAGTTCACCCGGCTGGTGCACGACCTGTGGGACAGCTTCCCCCGC
GAGGCACTCCTGGTCGACCGCGAGAGCGGCCGCTACGCCGACGTTTCCCGGGTGCGCCCGGTCGACCACGAC
GGCGAATTCCTCAAGGTCAAGGGACCGCTCAACCTGCCGGCCTTCGGCGAGGCGCGGATTCCCCTGGTGCAG
GCCGGCGCCTCCGAGAGCGGGCGCGACTTCGCCGCCTCGGTGGCCGACCTGGTGTTCGCGCCGACCCCGGAC
AAGGAGGCTGCCCTGGAACTGCGCCGCGACCTTTCCCGCCGCGCCGAACGCCACGGTCGCTCGCCGCGCGAC
GTGCGCCTGCTGCCGGGCTTCAGCCTGTACCTGGCGGAGAGCCGTGAGGAGGCGCGGGAAATCTTCATGCAG
ACCCACGCGCGCCTGGACCGCGCGCGCAAGTTCGCCACGATCAGGCAGATGCTCGGCCTCGACCTCAGCGAC
TGGCCGCTGGACCGGCCGATTTCCGCGGCCGACCTGCCGCCGCCGGTGGCCAACCCCGGCAGCCGCACCCAC
ACCGACCTGCTGCGGCGCCTGATCGAGCGCGAGACGTTACGCCTGGACCAGTTGCTGCTGCGCCCCGAGGTG
GTTTCCGCGGCGCACTGGCAGGTCATCGGTACGGTGGACGATGCCGTCGAGCAGATCGTCGACTGGGCCGCC
GCCGGCGCCATGGACGGTTTCATCGCCGCGCCGGGAGGCTCGGTCGGCTCGCTGCGGCTGTTCCTCGAACAG
GTGGTGCCGCGCCTGGTGGAGAAGGGGCTGTTCCGCGAGCGCTACAGCGCCACTACCTTCGCCGGGCACCTG
GCAGAGGAATGA

Translation:

MSTPKRLHIGMSLAPTWLSGDAWRRPDSNIEGIFGSDFAVDIARRSEAAHLDFVFRPDVSSLPLDVLETGSG
FASLDPTVLLAAVARETSRIGLVSTVSTTFYPPYVVARQLQSLHWISDGRAGWNIVTALQGHENFGLDAMPD
AEQRYARAAEFTRLVHDLWDSFPREALLVDRESGRYADVSRVRPVDHDGEFLKVKGPLNLPAFGEARIPLVQ
AGASESGRDFAASVADLVFAPTPDKEAALELRRDLSRRAERHGRSPRDVRLLPGFSLYLAESREEAREIFMQ
THARLDRARKFATIRQMLGLDLSDWPLDRPISAADLPPPVANPGSRTHTDLLRRLIERETLRLDQLLLRPEV
VSAAHWQVIGTVDDAVEQIVDWAAAGAMDGFIAAPGGSVGSLRLFLEQVVPRLVEKGLFRERYSATTFAGHL
AEE*

AnnotationID:1235 GeneID:1226

AnnotatorUID: diggins

Modification Date/Time: 2005-03-31 06:06:28

Gene Name:

Confidence Code: 3

GeneProduct: putative oxidoreductase

Cell Localization: ()

Synonyms: PA4155

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (12) Energy metabolism

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG2141

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin
reductase and related flavin-dependent oxidoreductases 
[Energy production and conversion]
CD-Length = 336 residues,  97.6% aligned
Score =  141 bits (356), Expect = 2e-34
Identities = 113/395 (28%), Positives = 155/395 (39%), Gaps = 70/395 (17%)

Genomic Context:

Comment:

ReferenceID:2455

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:19598

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36810

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 1226_cdd.html

URL:

Homologs By Global Alignment

Gene ID:1226

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2221 PA4155_tr translation of PA4155 435 99.54 99.77 0 2222.0

73536 gb|AAG07542.1|AE004832_2 (AE004832) hypothetical protein PA4155 [Pseudomonas aeruginosa PAO1] 435 99.54 99.77 0 2222.0

GC ORFID: `44228`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA4155`	Glimmer Score:
Start: `4076388`	Stop: `4075081`
Length: `1308`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA4155 translation of PA4155`	Homolog Bit Score `860.0`
Other Homologs: `t_PA4155 (ORF: GLIMMER)`
GC ORF Sequence
ATGAGTACCCCGAAACGCCTGCACATCGGCATGTCGCTGGCCCCCACCTGGCTCAGCGGCGATGCCTGGCGG CGCCCCGACAGCAACATCGAAGGCATCTTCGGCAGCGATTTCGCCGTCGACATCGCCAGGCGCTCCGAAGCC GCCCACCTCGACTTCGTGTTTCGCCCGGACGTCAGCAGCCTGCCACTGGATGTGCTGGAGACCGGCTCCGGC TTCGCCAGCCTGGATCCCACCGTACTGCTTGCCGCGGTCGCCCGCGAAACCTCGCGGATCGGCCTGGTGTCG ACGGTCTCCACCACGTTCTATCCGCCCTACGTGGTGGCCCGGCAGCTGCAATCGCTGCACTGGATCAGCGAC GGCCGCGCCGGCTGGAACATCGTCACCGCGCTGCAGGGCCACGAGAACTTCGGCCTGGACGCGATGCCCGAT GCGGAGCAGCGCTACGCGCGCGCCGCCGAGTTCACCCGGCTGGTGCACGACCTGTGGGACAGCTTCCCCCGC GAGGCACTCCTGGTCGACCGCGAGAGCGGCCGCTACGCCGACGTTTCCCGGGTGCGCCCGGTCGACCACGAC GGCGAATTCCTCAAGGTCAAGGGACCGCTCAACCTGCCGGCCTTCGGCGAGGCGCGGATTCCCCTGGTGCAG GCCGGCGCCTCCGAGAGCGGGCGCGACTTCGCCGCCTCGGTGGCCGACCTGGTGTTCGCGCCGACCCCGGAC AAGGAGGCTGCCCTGGAACTGCGCCGCGACCTTTCCCGCCGCGCCGAACGCCACGGTCGCTCGCCGCGCGAC GTGCGCCTGCTGCCGGGCTTCAGCCTGTACCTGGCGGAGAGCCGTGAGGAGGCGCGGGAAATCTTCATGCAG ACCCACGCGCGCCTGGACCGCGCGCGCAAGTTCGCCACGATCAGGCAGATGCTCGGCCTCGACCTCAGCGAC TGGCCGCTGGACCGGCCGATTTCCGCGGCCGACCTGCCGCCGCCGGTGGCCAACCCCGGCAGCCGCACCCAC ACCGACCTGCTGCGGCGCCTGATCGAGCGCGAGACGTTACGCCTGGACCAGTTGCTGCTGCGCCCCGAGGTG GTTTCCGCGGCGCACTGGCAGGTCATCGGTACGGTGGACGATGCCGTCGAGCAGATCGTCGACTGGGCCGCC GCCGGCGCCATGGACGGTTTCATCGCCGCGCCGGGAGGCTCGGTCGGCTCGCTGCGGCTGTTCCTCGAACAG GTGGTGCCGCGCCTGGTGGAGAAGGGGCTGTTCCGCGAGCGCTACAGCGCCACTACCTTCGCCGGGCACCTG GCAGAGGAATGA