ViewGene
Locus Name:
GeneID:
Location:

GeneID:1225
TrivialName: PA14_21990
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21990
PAO1 Ortholog Locus:PA3247
Sequence Length:1290
Protein Length:429
Start: 1913637
Stop: 1912348
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06635.1|AE004747_8 (AE004747) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 427/429 (99%), Positives = 428/429 (99%)
Sequence:
ATGCGCGCAGAACTCAACCAGGGCCTGATCGATTTCCTCAAGGCCTCGCCCACGCCTTTCCATGCTACCGCC
AGCCTCGCCCGCCGCCTGGAAGCCGCCGGCTACCGCCGCCTCGACGAGCGCGACGCCTGGCACACCGAAGCC
GGCGGCCGCTACTACGTGACCCGTAACGACTCGTCGCTGATCGCCATCCGCCTGGGCCGTCGCTCGCCCCTG
GAAAGCGGCTTCCGCCTGGTCGGCGCGCACACCGACAGCCCCTGCCTGCGGGTCAAGCCGAACCCGGAGATC
GCTCGCAACGGCTTCCTCCAGCTCGGCGTCGAAGTCTATGGCGGCGCCCTCTTCGCCCCCTGGTTCGACCGC
GACCTGTCACTGGCCGGGCGCGTCACCTTCCGCGCCAATGGCAAGCTGGAAAGCCGCCTGGTCGACTTCCGC
AAGGCCATCGCGGTAATCCCCAACCTGGCCATCCATCTCAACCGCGCCGCCAACGAGGGTTGGCCGATCAAC
GCGCAGAACGAACTGCCGCCGATCATCGCCCAACTGGCGCCGGGCGAGGCCGCCGACTTCCGCCTGCTGCTC
GACGAACAGCTGCTGCGCGAGCACGGCATCACCGCCGACGTGGTACTGGACTACGAGCTGTCGTTCTACGAC
ACCCAGTCCGCCGCGGTGGTAGGCCTCAACGACGAGTTCATCGCCGGGGCGCGCCTGGACAACCTGCTGTCC
TGCCACGCCGGCCTGGAAGCCCTGCTCAACGCCGAAGGCGACGAGAACTGCATCCTGGTCTGCACCGACCAC
GAGGAAGTCGGTTCCTGTTCGCATTGCGGCGCCGACGGTCCGTTCCTCGAACAGGTACTGCGCCGCCTGCTG
CCGGAAGGCGACGCCTTCAGCCGGGCGATCCAGCGCTCGCTGCTGGTCTCGGCCGACAACGCCCATGGCGTA
CACCCGAACTACGCCGACAAGCACGACGCCAACCATGGCCCGGCGCTGAACGGCGGTCCGGTGATCAAGATC
AACAGCAACCAGCGCTATGCCACCAACAGCGAAACCGCCGGCTTCTTCCGCCACCTCTGTCAGGACAGCGAA
GTGCCGGTGCAGAGCTTCGTGACCCGCAGCGACATGGGATGCGGCTCGACCATCGGCCCGATCACCGCCAGC
CAGGTCGGCGTGCGCACCGTCGACATAGGCCTGCCGACCTTCGCCATGCACTCGATTCGCGAGCTGGCCGGC
AGCCATGACCTGGCGCACCTGGTCAAGGTGCTCGGCGCCTTCTACGCCAGCAGCGAGCTGCCCTGA
Translation:
MRAELNQGLIDFLKASPTPFHATASLARRLEAAGYRRLDERDAWHTEAGGRYYVTRNDSSLIAIRLGRRSPL
ESGFRLVGAHTDSPCLRVKPNPEIARNGFLQLGVEVYGGALFAPWFDRDLSLAGRVTFRANGKLESRLVDFR
KAIAVIPNLAIHLNRAANEGWPINAQNELPPIIAQLAPGEAADFRLLLDEQLLREHGITADVVLDYELSFYD
TQSAAVVGLNDEFIAGARLDNLLSCHAGLEALLNAEGDENCILVCTDHEEVGSCSHCGADGPFLEQVLRRLL
PEGDAFSRAIQRSLLVSADNAHGVHPNYADKHDANHGPALNGGPVIKINSNQRYATNSETAGFFRHLCQDSE
VPVQSFVTRSDMGCGSTIGPITASQVGVRTVDIGLPTFAMHSIRELAGSHDLAHLVKVLGAFYASSELP*
AnnotationID:1234GeneID:1225
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 14:02:24
Gene Name:
Confidence Code:3
GeneProduct:putative aspartyl aminopeptidase
Cell Localization:()
Synonyms:PA3247
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam02127,COG1362
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67351.1|AE016361_5 (AE016780) aminopeptidase, putative [Pseudomonas putida KT2440]
          Length = 429

 Score =  709 bits (1831), Expect = 0.0
 Identities = 341/429 (79%), Positives = 378/429 (88%)

>gb|AAO57342.1| (AE016870) aspartyl aminopeptidase [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 429

 Score =  707 bits (1824), Expect = 0.0
 Identities = 341/429 (79%), Positives = 377/429 (87%)








 
Structural Features:
pfam02127, Peptidase_M18, Aminopeptidase I zinc metalloprotease (M18).
CD-Length = 428 residues, 100.0% aligned
Score =  427 bits (1100), Expect = 1e-120
Identities = 191/428 (44%), Positives = 256/428 (59%), Gaps = 16/428 (3%)

COG1362, LAP4, Aspartyl aminopeptidase [Amino acid transport and metabolism]
CD-Length = 437 residues,  97.0% aligned
Score =  557 bits (1437), Expect = 9e-160
Identities = 223/428 (52%), Positives = 285/428 (66%), Gaps = 14/428 (3%)







   
Genomic Context:






   
Comment:


















    ReferenceID:2453




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19596




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32295




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1225_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1225
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2220
                           PA3247_tr
                           translation of PA3247
                           429
                           99.53
                           99.76
                           0
                           2222.0
     

     
     
73526
                           gb|AAG06635.1|AE004747_8
                           (AE004747) hypothetical protein PA3247 [Pseudomonas aeruginosa PAO1]
                           429
                           99.53
                           99.76
                           0
                           2222.0
     

     
     
73527
                           gb|AAN67351.1|AE016361_5
                           (AE016780) aminopeptidase, putative [Pseudomonas putida KT2440]
                           429
                           79.48
                           88.11
                           0
                           1831.0
     

     
     
73528
                           gb|AAO57342.1|
                           (AE016870) aspartyl aminopeptidase [Pseudomonas syringae pv. tomato str. DC3000]
                           429
                           79.48
                           87.87
                           0
                           1824.0
     

     
     
73529
                           emb|CAD85444.1|
                           (BX321861) Aminopeptidase I zinc metalloprotease (M18) [Nitrosomonas europaea ATCC 19718]
                           448
                           44.86
                           63.83
                           33
                           961.0
     

     






      

          
GC ORFID: 44227How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3247Glimmer Score: 

          
Start: 3040294Stop: 3041583

          
Length: 1290


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3247 translation of PA3247Homolog Bit Score 860.0

          
Other Homologs:  psyr_15may02_Scaffold16_revised_gene2673 (ORF: BLASTX 705.0), t_PA3247 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCGCAGAACTCAACCAGGGCCTGATCGATTTCCTCAAGGCCTCGCCCACGCCTTTCCATGCTACCGCC 
AGCCTCGCCCGCCGCCTGGAAGCCGCCGGCTACCGCCGCCTCGACGAGCGCGACGCCTGGCACACCGAAGCC 
GGCGGCCGCTACTACGTGACCCGTAACGACTCGTCGCTGATCGCCATCCGCCTGGGCCGTCGCTCGCCCCTG 
GAAAGCGGCTTCCGCCTGGTCGGCGCGCACACCGACAGCCCCTGCCTGCGGGTCAAGCCGAACCCGGAGATC 
GCTCGCAACGGCTTCCTCCAGCTCGGCGTCGAAGTCTATGGCGGCGCCCTCTTCGCCCCCTGGTTCGACCGC 
GACCTGTCACTGGCCGGGCGCGTCACCTTCCGCGCCAATGGCAAGCTGGAAAGCCGCCTGGTCGACTTCCGC 
AAGGCCATCGCGGTAATCCCCAACCTGGCCATCCATCTCAACCGCGCCGCCAACGAGGGTTGGCCGATCAAC 
GCGCAGAACGAACTGCCGCCGATCATCGCCCAACTGGCGCCGGGCGAGGCCGCCGACTTCCGCCTGCTGCTC 
GACGAACAGCTGCTGCGCGAGCACGGCATCACCGCCGACGTGGTACTGGACTACGAGCTGTCGTTCTACGAC 
ACCCAGTCCGCCGCGGTGGTAGGCCTCAACGACGAGTTCATCGCCGGGGCGCGCCTGGACAACCTGCTGTCC 
TGCCACGCCGGCCTGGAAGCCCTGCTCAACGCCGAAGGCGACGAGAACTGCATCCTGGTCTGCACCGACCAC 
GAGGAAGTCGGTTCCTGTTCGCATTGCGGCGCCGACGGTCCGTTCCTCGAACAGGTACTGCGCCGCCTGCTG 
CCGGAAGGCGACGCCTTCAGCCGGGCGATCCAGCGCTCGCTGCTGGTCTCGGCCGACAACGCCCATGGCGTA 
CACCCGAACTACGCCGACAAGCACGACGCCAACCATGGCCCGGCGCTGAACGGCGGTCCGGTGATCAAGATC 
AACAGCAACCAGCGCTATGCCACCAACAGCGAAACCGCCGGCTTCTTCCGCCACCTCTGTCAGGACAGCGAA 
GTGCCGGTGCAGAGCTTCGTGACCCGCAGCGACATGGGATGCGGCTCGACCATCGGCCCGATCACCGCCAGC 
CAGGTCGGCGTGCGCACCGTCGACATAGGCCTGCCGACCTTCGCCATGCACTCGATTCGCGAGCTGGCCGGC 
AGCCATGACCTGGCGCACCTGGTCAAGGTGCTCGGCGCCTTCTACGCCAGCAGCGAGCTGCCCTGA