ViewGene

Locus Name:
GeneID:
Location:

GeneID:1223
TrivialName: PA14_37070
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37070
PAO1 Ortholog Locus:PA2127
Sequence Length:1227
Protein Length:408
Start: 3301756
Stop: 3302982
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05515.1|AE004640_4 (AE004640) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 407/408 (99%), Positives = 407/408 (99%)
Sequence:
ATGGCAGGCAAGCATTACCAGGATGCCGATGTGCATGCCGCAACCCTATCCCGCCTCCGACTGGTATTCCGG
AACTTCGAGCGCGTCTGTGTCGCCTTCTCCGGTGGCAAGGACAGCTCGGTCACCCTGCAATTGGCGCTGGAC
GTGGCACGCGAGTTGGGACGCAGCCCGGTGGACGTACTGTTCATCGACCTGGAGGGGCAGTACCAGGCCACC
ATCGATCACGTCAGCGAGATGCTCGGGCGTCCCGACGTACGCCCCTGGTGGGTCTGCCTGCCACTCAACCTG
CGCAACGCCTCCAGCCTGGAGGAACCCTACTGGTGCTGCTGGGAGCCCGGCGCCGAGGCCGACTGGGTGCGC
CCGCTACCGAAGCAGCGAGGGGTGATCAGCGACCCGGCGTTCTTCCCCTTCTACCGCTACCGCATGGAGTTC
GAGGAGTTCGTCGCCGGCTTCAACGCCTGGCTGGCCAGGGAAGAGCCTACCGCGTTCCTGGTCGGCATCCGT
TCGGACGAATCGCTCAATCGCTACCTGGCGGTCAAGCGCAGGAGCCGGGCGAAACAATGCGCCTGGACGCCG
CCGGGCGGCTCCGCGCCGCTGGCCTGGAGCGCGCGCGACCGGGCCAACCCGCAGGCGGTGAGCTTCTTCCCG
ATCTACGACTGGCGTTTCGAGGATCTCTGGCGTTGCGTCGCCGACCACGGCTACGCCTATAACCGCCTCTAC
GACCAGATGTACCGCGCCGGCGTGCCGTTCTCGCAGATGCGCATCTGCCAGCCCTATGGCGACGACCAGCGC
AAGGGCCTCGACCTGTTCCACCGGATCGAGCCACGCACCTGGTTCAAGGTAGTCCGGCGCGTCGCCGGCGCC
AACTATGGGGCGCGCTATTGTCGCCAGCGCTTCCTCGGCTACCGTGGCGGCCTTGGCCTGCCGCCCTCCTTC
GGCACCTGGCGCGAGTACAGCCAGTTCCTCCTGCGCAGCATGCCGCCGCCTCTGCGCGGCATCTACCAGCGG
CGCATCGAGCGTTTCATCCTCTGGTGGAAGCAGCACGACTATCCCCTTGCCATCTGGCCGGACGCGGGGATC
CCGGCCCTGGAGAATCGTCGCAAGCAGCCGTCCTGGCGGCGTATTGCGCTATCCCTGCTGAAGCAGGACATG
GCCCGCTCGCTGTCCTTCGGCTTCTCCCAGACCGATATCGACAGACTGGTCCCCGGTCGGGAGAAGCGCTCG
TGA
Translation:
MAGKHYQDADVHAATLSRLRLVFRNFERVCVAFSGGKDSSVTLQLALDVARELGRSPVDVLFIDLEGQYQAT
IDHVSEMLGRPDVRPWWVCLPLNLRNASSLEEPYWCCWEPGAEADWVRPLPKQRGVISDPAFFPFYRYRMEF
EEFVAGFNAWLAREEPTAFLVGIRSDESLNRYLAVKRRSRAKQCAWTPPGGSAPLAWSARDRANPQAVSFFP
IYDWRFEDLWRCVADHGYAYNRLYDQMYRAGVPFSQMRICQPYGDDQRKGLDLFHRIEPRTWFKVVRRVAGA
NYGARYCRQRFLGYRGGLGLPPSFGTWREYSQFLLRSMPPPLRGIYQRRIERFILWWKQHDYPLAIWPDAGI
PALENRRKQPSWRRIALSLLKQDMARSLSFGFSQTDIDRLVPGREKRS*
AnnotationID:1232GeneID:1223
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 10:10:31
Gene Name:
Confidence Code:3
GeneProduct:putative phosphoadenosine phosphosulfate sulfotransferase
Cell Localization:()
Synonyms:PA2127
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3969
Secondary Functional Category(ies):amino acid biosynthesis and metabolims
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG3969, COG3969, Predicted phosphoadenosine phosphosulfate sulfotransferase
CD-Length = 407 residues,  99.0% aligned
Score =  574 bits (1480), Expect = 7e-165
Identities = 206/414 (49%), Positives = 256/414 (61%), Gaps = 17/414 (4%)
Genomic Context:
Comment:
ReferenceID:2449
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19592
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32586
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1223_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1223

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2217 PA2127_tr translation of PA2127 408 99.75 99.75 0 2223.0
73502 gb|AAG05515.1|AE004640_4 (AE004640) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 408 99.75 99.75 0 2223.0
73503 emb|CAD18770.1| (AL646086) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum] 417 70.50 82.01 10 1645.0
73505 emb|CAD33763.1| (AJ488511) Z1203 protein [Escherichia coli] 445 39.10 52.58 72 736.0
73509 gb|AAR07746.1| (AY378100) unknown [Klebsiella pneumoniae] 440 38.18 52.27 62 723.0
GC ORFID: 44225How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2127Glimmer Score:
Start: 1652158Stop: 1650932
Length: 1227
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2127 translation of PA2127Homolog Bit Score 860.0
Other Homologs: t_PA2127 (ORF: GLIMMER)
GC ORF Sequence
ATGGCAGGCAAGCATTACCAGGATGCCGATGTGCATGCCGCAACCCTATCCCGCCTCCGACTGGTATTCCGG
AACTTCGAGCGCGTCTGTGTCGCCTTCTCCGGTGGCAAGGACAGCTCGGTCACCCTGCAATTGGCGCTGGAC
GTGGCACGCGAGTTGGGACGCAGCCCGGTGGACGTACTGTTCATCGACCTGGAGGGGCAGTACCAGGCCACC
ATCGATCACGTCAGCGAGATGCTCGGGCGTCCCGACGTACGCCCCTGGTGGGTCTGCCTGCCACTCAACCTG
CGCAACGCCTCCAGCCTGGAGGAACCCTACTGGTGCTGCTGGGAGCCCGGCGCCGAGGCCGACTGGGTGCGC
CCGCTACCGAAGCAGCGAGGGGTGATCAGCGACCCGGCGTTCTTCCCCTTCTACCGCTACCGCATGGAGTTC
GAGGAGTTCGTCGCCGGCTTCAACGCCTGGCTGGCCAGGGAAGAGCCTACCGCGTTCCTGGTCGGCATCCGT
TCGGACGAATCGCTCAATCGCTACCTGGCGGTCAAGCGCAGGAGCCGGGCGAAACAATGCGCCTGGACGCCG
CCGGGCGGCTCCGCGCCGCTGGCCTGGAGCGCGCGCGACCGGGCCAACCCGCAGGCGGTGAGCTTCTTCCCG
ATCTACGACTGGCGTTTCGAGGATCTCTGGCGTTGCGTCGCCGACCACGGCTACGCCTATAACCGCCTCTAC
GACCAGATGTACCGCGCCGGCGTGCCGTTCTCGCAGATGCGCATCTGCCAGCCCTATGGCGACGACCAGCGC
AAGGGCCTCGACCTGTTCCACCGGATCGAGCCACGCACCTGGTTCAAGGTAGTCCGGCGCGTCGCCGGCGCC
AACTATGGGGCGCGCTATTGTCGCCAGCGCTTCCTCGGCTACCGTGGCGGCCTTGGCCTGCCGCCCTCCTTC
GGCACCTGGCGCGAGTACAGCCAGTTCCTCCTGCGCAGCATGCCGCCGCCTCTGCGCGGCATCTACCAGCGG
CGCATCGAGCGTTTCATCCTCTGGTGGAAGCAGCACGACTATCCCCTTGCCATCTGGCCGGACGCGGGGATC
CCGGCCCTGGAGAATCGTCGCAAGCAGCCGTCCTGGCGGCGTATTGCGCTATCCCTGCTGAAGCAGGACATG
GCCCGCTCGCTGTCCTTCGGCTTCTCCCAGACCGATATCGACAGACTGGTCCCCGGTCGGGAGAAGCGCTCG
TGA