ViewGene
Locus Name:
GeneID:
Location:

GeneID:1221
TrivialName: PA14_44880
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44880
PAO1 Ortholog Locus:PA1513
Sequence Length:1278
Protein Length:425
Start: 3998194
Stop: 3999471
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04902.1|AE004580_2 (AE004580) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 425/425 (100%), Positives = 425/425 (100%)
Sequence:
GTGGAAGCACATCTCATCGAATGGCTGAACCTGCTGGTGCGCTGGATTCACATGATCGTCGGGATCGCGTGG
ATCGGCGCTTCGTTCTATTTCGTCTGGCTGGAGAACAACCTCAACCGCAGCAACCCGCGTGAAGGCCTGTCC
GGAGACCTCTGGGCAATCCACGGTGGCGGCATCTACCACCTGGAGAAGTACAAGCTGGCTCCGCCGAAAATG
CCGGAGAACCTGCACTGGTTCAAATGGGAGGCCTACTCCACCTGGATGTCCGGGGTGGTGTTGCTGACCATC
GTGTTCTACCTGAACCCGACCCTCTACCTGATCGCCCCCGGCAGCGACCTGGCGCCGGCGGCGGCCATCGCC
ATCGGTATCGGTTCGCTGGTCTGCGGCTGGTTCGTCTACACCATCCTCTGCGATTCGGCGCTGGGCAAGACC
CCTGCCCTGCTCGGCCTGGTCCTGTTCGTCCTGCTGGTCGCCGCCGCCTACGGCCTGACCCAGGTGTTCAGC
GGCCGCGGCGCCTACCTGCACGTCGGCGCGATCATCGGCACCATCATGGTCGGCAACGTGTTCAGGGTGATC
ATGCCGGCCCAGCGCGCGCTGGTGAAAGCCATCGAAGAAAACCGCGAGCCCGATCCGGTGCTGCCGGCCAAG
GGCCTGCTGCGCTCCCGGCACAACAACTACTTCACCCTGCCGGTACTGTTCATCATGATCAGCAACCACTTC
CCGAGCACCTACGGCAGCCAGTACAACTGGCTGATCCTGGCCGCCATCGCGGTGCTCGCGGTACTGGTACGC
CACTACTTCAACACCCGCCACGAAAGCAACCGCTTCGCCTGGGCCCTGCCCGCCGGCGCGCTGGGCATGATC
GCCCTGGCCTTCGTCACCACGCCGAACTACCAGCAGGCTTCCGCACCGCTGGCCAGCACCCCGGCGGCGGCA
CCGGCACAACCGGCGACCGGCGGCGACGCACCAGCCGCGCCCGCCGCGACCCAGGCCTCCAATGCCGGGGCC
GCGAGCGGAGCCGACTTCGACAAGGTCCATCACGTGATCCAGGAGCGCTGCACCGTCTGCCACTCGGCGAAA
CCGACCAGCCAGCTGTTCAGCACCGCGCCAGGCGGGATCATGCTCGACACCCCGCAGCAGATCCAGCAACTG
GCACCGAAGATCCAGGCCCAGGCCGTGGCCTCGCAGATCATGCCGCTGGGCAACATCACGCAGATGACCCAG
GAAGAACGCAACCTGATCGGCAGCTGGATCGCCAAGGGCGCACAGATCAACTGA
Translation:
MEAHLIEWLNLLVRWIHMIVGIAWIGASFYFVWLENNLNRSNPREGLSGDLWAIHGGGIYHLEKYKLAPPKM
PENLHWFKWEAYSTWMSGVVLLTIVFYLNPTLYLIAPGSDLAPAAAIAIGIGSLVCGWFVYTILCDSALGKT
PALLGLVLFVLLVAAAYGLTQVFSGRGAYLHVGAIIGTIMVGNVFRVIMPAQRALVKAIEENREPDPVLPAK
GLLRSRHNNYFTLPVLFIMISNHFPSTYGSQYNWLILAAIAVLAVLVRHYFNTRHESNRFAWALPAGALGMI
ALAFVTTPNYQQASAPLASTPAAAPAQPATGGDAPAAPAATQASNAGAASGADFDKVHHVIQERCTVCHSAK
PTSQLFSTAPGGIMLDTPQQIQQLAPKIQAQAVASQIMPLGNITQMTQEERNLIGSWIAKGAQIN*
AnnotationID:1230GeneID:1221
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 07:07:41
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA1513
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3748
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57139.1| (AE016869) membrane protein, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 421

 Score =  645 bits (1664), Expect = 0.0
 Identities = 313/423 (73%), Positives = 352/423 (83%), Gaps = 4/423 (0%)

>emb|CAD15822.1| (AL646068) PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
          Length = 414

 Score =  380 bits (977), Expect = e-105
 Identities = 193/427 (45%), Positives = 265/427 (62%), Gaps = 22/427 (5%)

>gb|AAL52753.1| (AE009592) Hypothetical Membrane Spanning Protein [Brucella
           melitensis 16M]
          Length = 417

 Score =  327 bits (839), Expect = 7e-89
 Identities = 166/414 (40%), Positives = 241/414 (58%), Gaps = 23/414 (5%)






 
Structural Features:
COG3748, COG3748, Predicted membrane protein 
CD-Length = 407 residues, 100.0% aligned
Score =  559 bits (1441), Expect = 2e-160
Identities = 217/426 (50%), Positives = 274/426 (64%), Gaps = 20/426 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14305




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19588




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37326




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1221_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1221
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2214
                           PA1513_tr
                           translation of PA1513
                           425
                           99.99
                           99.99
                           0
                           2222.0
     

     
     
73283
                           gb|AAG04902.1|AE004580_2
                           (AE004580) hypothetical protein PA1513 [Pseudomonas aeruginosa PAO1]
                           425
                           99.76
                           99.99
                           0
                           2219.0
     

     
     
73285
                           gb|AAO57139.1|
                           (AE016869) membrane protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           438
                           73.05
                           81.27
                           30
                           1678.0
     

     
     
73284
                           gb|AAN69869.1|AE016626_4
                           (AE016790) conserved hypothetical protein [Pseudomonas putida KT2440]
                           452
                           73.00
                           81.19
                           33
                           1739.0
     

     
     
73287
                           gb|AAK24576.1|
                           (AE005928) hypothetical protein [Caulobacter crescentus CB15]
                           427
                           44.73
                           59.25
                           34
                           930.0
     

     






      

          
GC ORFID: 44223How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1513Glimmer Score: 

          
Start: 955715Stop: 954438

          
Length: 1278


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1513 translation of PA1513Homolog Bit Score 860.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene591 (ORF: BLASTX 660.0), t_PA1513 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGAAGCACATCTCATCGAATGGCTGAACCTGCTGGTGCGCTGGATTCACATGATCGTCGGGATCGCGTGG 
ATCGGCGCTTCGTTCTATTTCGTCTGGCTGGAGAACAACCTCAACCGCAGCAACCCGCGTGAAGGCCTGTCC 
GGAGACCTCTGGGCAATCCACGGTGGCGGCATCTACCACCTGGAGAAGTACAAGCTGGCTCCGCCGAAAATG 
CCGGAGAACCTGCACTGGTTCAAATGGGAGGCCTACTCCACCTGGATGTCCGGGGTGGTGTTGCTGACCATC 
GTGTTCTACCTGAACCCGACCCTCTACCTGATCGCCCCCGGCAGCGACCTGGCGCCGGCGGCGGCCATCGCC 
ATCGGTATCGGTTCGCTGGTCTGCGGCTGGTTCGTCTACACCATCCTCTGCGATTCGGCGCTGGGCAAGACC 
CCTGCCCTGCTCGGCCTGGTCCTGTTCGTCCTGCTGGTCGCCGCCGCCTACGGCCTGACCCAGGTGTTCAGC 
GGCCGCGGCGCCTACCTGCACGTCGGCGCGATCATCGGCACCATCATGGTCGGCAACGTGTTCAGGGTGATC 
ATGCCGGCCCAGCGCGCGCTGGTGAAAGCCATCGAAGAAAACCGCGAGCCCGATCCGGTGCTGCCGGCCAAG 
GGCCTGCTGCGCTCCCGGCACAACAACTACTTCACCCTGCCGGTACTGTTCATCATGATCAGCAACCACTTC 
CCGAGCACCTACGGCAGCCAGTACAACTGGCTGATCCTGGCCGCCATCGCGGTGCTCGCGGTACTGGTACGC 
CACTACTTCAACACCCGCCACGAAAGCAACCGCTTCGCCTGGGCCCTGCCCGCCGGCGCGCTGGGCATGATC 
GCCCTGGCCTTCGTCACCACGCCGAACTACCAGCAGGCTTCCGCACCGCTGGCCAGCACCCCGGCGGCGGCA 
CCGGCACAACCGGCGACCGGCGGCGACGCACCAGCCGCGCCCGCCGCGACCCAGGCCTCCAATGCCGGGGCC 
GCGAGCGGAGCCGACTTCGACAAGGTCCATCACGTGATCCAGGAGCGCTGCACCGTCTGCCACTCGGCGAAA 
CCGACCAGCCAGCTGTTCAGCACCGCGCCAGGCGGGATCATGCTCGACACCCCGCAGCAGATCCAGCAACTG 
GCACCGAAGATCCAGGCCCAGGCCGTGGCCTCGCAGATCATGCCGCTGGGCAACATCACGCAGATGACCCAG 
GAAGAACGCAACCTGATCGGCAGCTGGATCGCCAAGGGCGCACAGATCAACTGA