ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1220

TrivialName: PA14_54520

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_54520

PAO1 Ortholog Locus: PA0755

Sequence Length: 1284

Protein Length: 427

Start: 4833756

Stop: 4835039

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG04144.1|AE004510_8 (AE004510) probable porin [Pseudomonas aeruginosa PAO1] Identities = 426/427 (99%), Positives = 426/427 (99%)

Sequence:

ATGTCGACTTCCCTGCCGCAGGCCGCAAGGTCTGTACGTTTGTCCCGCAGCACCACCCTGACCACCACCGCC
GTCGTGCTCGCCGGCATCGCGCCCCTGGGCAACGCCGCCGGCTTCCTCGAAGACAGCAAGGCCAGCCTGGAA
ACCCGCAACTTCTACATGAACCGCGACTTCCGCGACGGCCCCGGCCAGTCCAAGCGCGAGGAGTGGGCGCAA
GGCTTCATCCTCAACCTGCAGTCCGGCTACACCCAGGGCACCGTCGGCTTCGGCCTCGACGCCATGGGCATG
CTCGGCGTCAAGCTCGACTCCGGCCGCGGCCGCAGCGGTACCGGACTGCTGCCGAAGGATTCCGACGGCCGC
GCGCCGGACACCTACTCGAAACTGGGCCTGACCGCCAAGGTCAAGGTCTCGCAGAGCGAGCTGAAGGTCGGC
ACGCTGATTCCGAAGCTGCCATCGGTACAACCGAACAACGGGCGGATCTTCCCGCAGATATTCGAAGGTGCA
CTGCTCACCTCGAAGGAGATCAAGGACCTCGGCTTCACCGCCGGGCGCCTGGAAAAGACCAAGATCCGCGAC
TCCAGCGACTCCGAGGACCTCGCGCTGAACGACAAGAACGGCCGCTTCGCCGGGGTCAGCGCCGATCACTTC
GACCTCGGCGGACTGGACTACAAGCTCACCGACCAACTCACCGCCAGCTATCACTACAGCAACCTGCAGGAC
GTCTACCGCCAGCACTTCGTCGGCCTGCTGCACAGCTGGCCGATCGGTCCCGGCGAACTGACCAGCGACCTG
CGCTTCGCCCGCAGCACCGACAGCGGCTCGGCCAAGGCCGGCGGCATCGACAACAAGTCGCTCAACGGCATG
TTCACCTACAGCCTTGGCAACCATGCCTTCGGCGCGGCCTGGCAGCGAATGAACGGCGACGACGCCTTCCCC
TACCTGGAAGGCAGCAACCCGTACCTGGTCAACTTCGTCCAGGTCAACGACTTCGCCGGCCCCAAGGAGCGT
TCCTGGCAACTGCGCTACGACTACGACTTCGTCGGCCTCGGCATTCCCGGCCTGACCTTCATGACCCGCTAC
GTCAAGGGCGACAATGTCGAACTCGCCGGGCAGAGCGGCGAAGGCCGCGAATGGGAACGCAACACCGAACTG
CAGTACGTGTTCCAGAGCGGCGCGCTGAAGAACCTCGGAATCCGCTGGCGCAACGCGACCTTCCGTTCCAAT
TTCACCCGCGACATCGATGAGAACCGCCTGATCGTCAGCTATACCCTGCCGATCTGGTAA

Translation:

MSTSLPQAARSVRLSRSTTLTTTAVVLAGIAPLGNAAGFLEDSKASLETRNFYMNRDFRDGPGQSKREEWAQ
GFILNLQSGYTQGTVGFGLDAMGMLGVKLDSGRGRSGTGLLPKDSDGRAPDTYSKLGLTAKVKVSQSELKVG
TLIPKLPSVQPNNGRIFPQIFEGALLTSKEIKDLGFTAGRLEKTKIRDSSDSEDLALNDKNGRFAGVSADHF
DLGGLDYKLTDQLTASYHYSNLQDVYRQHFVGLLHSWPIGPGELTSDLRFARSTDSGSAKAGGIDNKSLNGM
FTYSLGNHAFGAAWQRMNGDDAFPYLEGSNPYLVNFVQVNDFAGPKERSWQLRYDYDFVGLGIPGLTFMTRY
VKGDNVELAGQSGEGREWERNTELQYVFQSGALKNLGIRWRNATFRSNFTRDIDENRLIVSYTLPIW*

AnnotationID:1229 GeneID:1220

AnnotatorUID: danlee

Modification Date/Time: 2004-04-14 12:12:10

Gene Name:

Confidence Code: 3

GeneProduct: probable porin

Cell Localization: (6) Outer membrane protein

Synonyms: PA0755, opdH

Cell Localization Confidence Code: 2

MolecularFunction:

Functional Category: (15) Membrane proteins

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: pfam03573

Secondary Functional Category(ies): Transport of small molecules

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

pfam03573, OprD, outer membrane porin.
    CD-Length = 449 residues,  98.0% aligned
    Score =  334 bits (856), Expect = 4e-92

Genomic Context:

Comment:

ReferenceID:2443

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:19586

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:1220

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2203 PA0755_tr translation of PA0755 427 99.76 99.76 0 2223.0

73242 gb|AAG04144.1|AE004510_8 (AE004510) probable porin [Pseudomonas aeruginosa PAO1] 427 99.76 99.76 0 2223.0

73243 gb|AAN67041.1|AE016333_2 (AE016779) porin, putative [Pseudomonas putida KT2440] 432 63.19 78.93 8 1451.0

73244 gb|AAG06426.1|AE004728_12 (AE004728) probable porin [Pseudomonas aeruginosa PAO1] 435 56.32 72.18 22 1284.0

2204 PA3038_tr translation of PA3038 435 56.32 72.18 22 1284.0

GC ORFID: `44222`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA0755`	Glimmer Score:
Start: `120151`	Stop: `118868`
Length: `1284`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAA`	Truncated Stop:
Homolog: `t_PA0755 translation of PA0755`	Homolog Bit Score `860.0`
Other Homologs: t_PA3038 (ORF: BLASTX 492.0), t_PA3588 (ORF: BLASTX 469.0), t_PA1025 (ORF: BLASTX 442.0), t_PA2113 (ORF: BLASTX 430.0), t_PA4137 (ORF: BLASTX 414.0), t_PA4179 (ORF: BLASTX 407.0), t_PA2213 (ORF: BLASTX 393.0), t_PA0291 (ORF: BLASTX 387.0), psyr_15may02_Scaffold1_revised_gene342 (ORF: BLASTX 339.0), t_PA0240 (ORF: BLASTX 332.0), psyr_15may02_Scaffold1_revised_gene1320 (ORF: BLASTX 332.0), psyr_15may02_Scaffold3_revised_gene5124 (ORF: BLASTX 330.0), t_PA4898 (ORF: BLASTX 324.0), t_PA0755 (ORF: GLIMMER)
GC ORF Sequence
ATGTCGACTTCCCTGCCGCAGGCCGCAAGGTCTGTACGTTTGTCCCGCAGCACCACCCTGACCACCACCGCC GTCGTGCTCGCCGGCATCGCGCCCCTGGGCAACGCCGCCGGCTTCCTCGAAGACAGCAAGGCCAGCCTGGAA ACCCGCAACTTCTACATGAACCGCGACTTCCGCGACGGCCCCGGCCAGTCCAAGCGCGAGGAGTGGGCGCAA GGCTTCATCCTCAACCTGCAGTCCGGCTACACCCAGGGCACCGTCGGCTTCGGCCTCGACGCCATGGGCATG CTCGGCGTCAAGCTCGACTCCGGCCGCGGCCGCAGCGGTACCGGACTGCTGCCGAAGGATTCCGACGGCCGC GCGCCGGACACCTACTCGAAACTGGGCCTGACCGCCAAGGTCAAGGTCTCGCAGAGCGAGCTGAAGGTCGGC ACGCTGATTCCGAAGCTGCCATCGGTACAACCGAACAACGGGCGGATCTTCCCGCAGATATTCGAAGGTGCA CTGCTCACCTCGAAGGAGATCAAGGACCTCGGCTTCACCGCCGGGCGCCTGGAAAAGACCAAGATCCGCGAC TCCAGCGACTCCGAGGACCTCGCGCTGAACGACAAGAACGGCCGCTTCGCCGGGGTCAGCGCCGATCACTTC GACCTCGGCGGACTGGACTACAAGCTCACCGACCAACTCACCGCCAGCTATCACTACAGCAACCTGCAGGAC GTCTACCGCCAGCACTTCGTCGGCCTGCTGCACAGCTGGCCGATCGGTCCCGGCGAACTGACCAGCGACCTG CGCTTCGCCCGCAGCACCGACAGCGGCTCGGCCAAGGCCGGCGGCATCGACAACAAGTCGCTCAACGGCATG TTCACCTACAGCCTTGGCAACCATGCCTTCGGCGCGGCCTGGCAGCGAATGAACGGCGACGACGCCTTCCCC TACCTGGAAGGCAGCAACCCGTACCTGGTCAACTTCGTCCAGGTCAACGACTTCGCCGGCCCCAAGGAGCGT TCCTGGCAACTGCGCTACGACTACGACTTCGTCGGCCTCGGCATTCCCGGCCTGACCTTCATGACCCGCTAC GTCAAGGGCGACAATGTCGAACTCGCCGGGCAGAGCGGCGAAGGCCGCGAATGGGAACGCAACACCGAACTG CAGTACGTGTTCCAGAGCGGCGCGCTGAAGAACCTCGGAATCCGCTGGCGCAACGCGACCTTCCGTTCCAAT TTCACCCGCGACATCGATGAGAACCGCCTGATCGTCAGCTATACCCTGCCGATCTGGTAA