ViewGene

Locus Name:
GeneID:
Location:

GeneID:122
TrivialName: PA14_23830
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_23830
PAO1 Ortholog Locus:PA3115
Sequence Length:2775
Protein Length:924
Start: 2070083
Stop: 2072857
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06503.1|AE004735_10 (AE004735) Motility protein FimV [Pseudomonas aeruginosa PAO1]
Identities = 911/924 (98%), Positives = 913/924 (98%), Gaps = 5/924 (0%)
Sequence:
ATGGTTCGGCTTCGTACACTGGTTCGGGCAATCGCGGCGGCCTCGGTCCTGACTTCCGGCATGGCGCATGGA
TTGGGACTGGGGGAAATCACCCTGAAGTCGGCGTTGAACCAACCGTTGGATGCCGAGATCGAGCTGCTCGAA
GTTCGTGACCTGGGTTCGGGCGAGGTGATCCCGAGCCTGGCGTCGCCGGAAGAGTTCAGCAAGGCGGGCGTC
GATCGCCTGTACTACCTCACCGACCTGAAGTTCACGCCGGTGGTGAAGCCCAACGGCAAGAGCGTCATTCGC
GTGACCTCGTCGAAGCCGGTGCAGGAGCCCTACCTGAACTTCCTGGTCCAGGTGCTCTGGCCGAACGGCCGC
CTGCTGCGCGAGTACACCGTCCTGCTGGATCCGCCGCTGTACTCCCCGCAGGCCGCGGCAAGCGCTCCGCAA
GCGCCGGTCAGCGCGCCGCGCGCGACCGGCGCCCCGCGAACCCCGCAGGCGCCGGCTCCGGTGCGTACCACC
GCGCCGGCAGGCAGCGACACCTATCGCACCGTTTCCAACGACACGCTCTGGGAGATCGCCCAGCGCAACCGT
ACCGATCGCGTTTCCGTACCCCAGGCGATGCTCGCGTTCCAGGAACTGAATCCGGGCGCCTTCGTCGATGGC
AACATCAACCGGCTGAAGAGCGGCCAGGTCCTGCGCATTCCCACCGAACAGCAGATGCTGGAGCGCTCGCCG
CGCGAGGCGCTGTCCCAGGTGCAGGCGCAGAACCAGAGCTGGCGCGGCAGCCGCAATCCGGCCGCGGGCACC
GCTGGCGCCAGGCAGTTGGATGCGACCCAGCGCAATGCCGCCGGGTCGGCGCCATCCAAGGTCGACGCCACG
GACAACCTGCGCCTGGTGTCTGGCGAGGGCAAGGCCAGCAAGGGTGCCGACAAGGGCGGGAAGGGCGACAGC
AAGGCGATCGCCGATACCCTGGCGGTGACCAAGGAAAGCCTCGATAGCACTCGCCGCGAGAACGAAGAACTG
CAGAGCCGCATGCAGGATCTGCAGAGCCAGCTGGACAAGCTGCAGAAGTTGATCCAGTTGAAGGACGCCCAG
TTGGCCAAGCTGCAAGGGCAGTTGGGCGCCGAAGGCCAGGGCGCAGCCCAGCCGAACGCAGCCCTGCCGGAT
GCGTCCCAGCCCAATGCAGCCGCGCAGGCGCCGGCTCAGCCCGGGACTCCCGCTGCGGCAGCGCCGACTCCT
GCTCCGGCCGGAGAAGCACCCGCCGCTCCGGCGCAGCCTCCGGTGGCGCCGCCGCCCGCGCCAGTTGCCGAG
AAGCCTCCGGCACCTGCCGTTCCGGCGCCCGCTCCGGTACAGGCGGCAGAACAGCCGGCACCGAGCTTCCTC
GACGAACTGCTGGCCAACCCGCTGTGGTTGGCGGTGATCGGCGGTAGTGCACTGCTGGCGTTGCTGGTGCTG
CTGATGATCCTGTCGCGGCGCAATGCGCAGAAAGAGAAGGAAGAAGCCCAGGCTTTCGCCGCGGATGCCGGC
GAGGAACAGGAGGATGCGCTGGACCTGGGAAAGGACGGCTTCGACGACCTGACCCTCGACGAGCCTGAACCG
CAGGTCGCAGCCGCTGCGCCGCAGGTCGAGAAGACCACTGCGCAGACTTCCGATGCGCTGGGCGAGGCCGAC
ATCTATATCGCCTACGGGCGTTTCAACCAGGCCGCCGAACTGTTGCAGAACGCCATCTACGACGAGCCGCAG
CGCACCGACCTGCGCCTCAAGCTGATGGAAGTCTATGCCGAGATGGGCGATCGCGAAGGTTTCGCTCGCCAG
GAAAACGAGCTGCGCGAAATCGGCGGCGCACAGCCGCAGGTCGAGCAGCTCAAGTCGCGCTACCCGGCAATG
GTCGCGGTCGCCGCGGTTGCCGGCCTGGCCGGCGCCAAGCTGGCGCAGGACGAGCTGGATAGCTTCAGCCTC
GACGACCTGTCGCTCGACGACAGCGGTCACGCGGCCAAGCCGGATGCGGCAGGACAGGATCTCGACGACGCC
TTCGACCTGAGCCTGGACGACCTGGGCGGCGGCGATCTTGGCAGCGACGACGTGCAGGCCGATCTCAAGTCC
GACAGCGGGGCGCTGGACGACCTGACCCTGGACAGCGATCTGGACCTGGCGGCCTCGACCGCGGCGGACAAG
CCTGTCGACGATCTCGACTTCGGCCTGGATTTCGCGGAGTTGGCAGAGACTCCGAGCCAACCCAAGCATGAC
GACCTGGGCGATTTCTCCCTGGATCTCGATGCGCCGGAAGACAAGCTTTCGGACGACGACTTCCTGCTTTCG
CTGAACGACGAGGTGCCCGCCGCGGCGCCAGCCAACAACGAATTCACCCTCGATACCGAGGCTGCCGAAGAG
CCGGCGTTGTCCCTGCCGGACGACTTCGACCTGTCGCTGGCCGACGAGCCGACGGAGCCGGCCGCTCCGGAG
AAGGGCGAGGACAGTTTCGCCGCCCAGTTGGACGAGGTGAGTGCGCAGTTGGACGAGTTGGCCAGCAACCTT
GACGAGCCGAAGAGCGCGGCGCCGAGTTTCTCCGCCGAGGATGCAGCGGTCGCCTCCGCCCTGGACGGAGAC
GCCGACGATGACTTCGACTTCCTCTCCGGTGCCGACGAAGCGGCGACCAAGCTGGATCTGGCTCGCGCCTAC
ATCGACATGGGCGATAGCGAAGGCGCGCGCGATATCCTCGACGAAGTCCTGGCCGAAGGTAACGACAGCCAG
CAGGCGGAAGCCCGCGAGTTGCTGGAGCGCCTGGCCTGA
Translation:
MVRLRTLVRAIAAASVLTSGMAHGLGLGEITLKSALNQPLDAEIELLEVRDLGSGEVIPSLASPEEFSKAGV
DRLYYLTDLKFTPVVKPNGKSVIRVTSSKPVQEPYLNFLVQVLWPNGRLLREYTVLLDPPLYSPQAAASAPQ
APVSAPRATGAPRTPQAPAPVRTTAPAGSDTYRTVSNDTLWEIAQRNRTDRVSVPQAMLAFQELNPGAFVDG
NINRLKSGQVLRIPTEQQMLERSPREALSQVQAQNQSWRGSRNPAAGTAGARQLDATQRNAAGSAPSKVDAT
DNLRLVSGEGKASKGADKGGKGDSKAIADTLAVTKESLDSTRRENEELQSRMQDLQSQLDKLQKLIQLKDAQ
LAKLQGQLGAEGQGAAQPNAALPDASQPNAAAQAPAQPGTPAAAAPTPAPAGEAPAAPAQPPVAPPPAPVAE
KPPAPAVPAPAPVQAAEQPAPSFLDELLANPLWLAVIGGSALLALLVLLMILSRRNAQKEKEEAQAFAADAG
EEQEDALDLGKDGFDDLTLDEPEPQVAAAAPQVEKTTAQTSDALGEADIYIAYGRFNQAAELLQNAIYDEPQ
RTDLRLKLMEVYAEMGDREGFARQENELREIGGAQPQVEQLKSRYPAMVAVAAVAGLAGAKLAQDELDSFSL
DDLSLDDSGHAAKPDAAGQDLDDAFDLSLDDLGGGDLGSDDVQADLKSDSGALDDLTLDSDLDLAASTAADK
PVDDLDFGLDFAELAETPSQPKHDDLGDFSLDLDAPEDKLSDDDFLLSLNDEVPAAAPANNEFTLDTEAAEE
PALSLPDDFDLSLADEPTEPAAPEKGEDSFAAQLDEVSAQLDELASNLDEPKSAAPSFSAEDAAVASALDGD
ADDDFDFLSGADEAATKLDLARAYIDMGDSEGARDILDEVLAEGNDSQQAEARELLERLA*
AnnotationID:132GeneID:122
AnnotatorUID: diggins
Modification Date/Time: 2005-04-13 07:07:50
Gene Name:fimV
Confidence Code:1
GeneProduct:pilus assembly protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3170
Secondary Functional Category(ies):intracellular trafficking and secretion
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG3170, FimV, Tfp pilus assembly protein FimV 
[Cell motility and secretion / Intracellular trafficking and secretion]
CD-Length = 755 residues,  88.5% aligned
Score =  435 bits (1119), Expect = 1e-122
Identities = 305/750 (40%), Positives = 374/750 (49%), Gaps = 91/750 (12%)
Genomic Context:
Comment:
ReferenceID:247
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17389
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32410
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:122_cdd.html
URL:
ReferenceID:33912
Author/Investigator(s): Semmler AB, Whitchurch CB, Leech AJ, Mattick JS.
Title: Identification of a novel gene, fimV, involved in twitching motility in Pseudomonas aeruginosa.
PubMed: 10846211
MedLine:
Source:
Microbiology. 2000 Jun;146 ( Pt 6):1321-32.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10846211
Homologs By Global Alignment
Gene ID:122

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
231 PA3115_tr translation of PA3115 924 98.59 98.80 5 4555.0
16915 gb|AAG06503.1|AE004735_10 (AE004735) Motility protein FimV [Pseudomonas aeruginosa PAO1] 924 98.59 98.80 5 4555.0
16916 gb|AAC23940.1| (U93274) FimV [Pseudomonas aeruginosa] 952 90.86 91.70 53 4280.0
16917 gb|AAO57286.1| (AE016869) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 1022 45.30 57.53 173 1860.0
16918 gb|AAN67608.1|AE016390_7 (AE016781) conserved hypothetical protein [Pseudomonas putida KT2440] 1022 43.44 54.01 209 1688.0
GC ORFID: 43124How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3115Glimmer Score:
Start: 2883848Stop: 2881074
Length: 2775
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3115 translation of PA3115Homolog Bit Score 1757.0
Other Homologs: psyr_15may02_Scaffold16_revised_gene2623 (ORF: BLASTX 662.0), t_PA3115 (ORF: GLIMMER)
GC ORF Sequence
ATGGTTCGGCTTCGTACACTGGTTCGGGCAATCGCGGCGGCCTCGGTCCTGACTTCCGGCATGGCGCATGGA
TTGGGACTGGGGGAAATCACCCTGAAGTCGGCGTTGAACCAACCGTTGGATGCCGAGATCGAGCTGCTCGAA
GTTCGTGACCTGGGTTCGGGCGAGGTGATCCCGAGCCTGGCGTCGCCGGAAGAGTTCAGCAAGGCGGGCGTC
GATCGCCTGTACTACCTCACCGACCTGAAGTTCACGCCGGTGGTGAAGCCCAACGGCAAGAGCGTCATTCGC
GTGACCTCGTCGAAGCCGGTGCAGGAGCCCTACCTGAACTTCCTGGTCCAGGTGCTCTGGCCGAACGGCCGC
CTGCTGCGCGAGTACACCGTCCTGCTGGATCCGCCGCTGTACTCCCCGCAGGCCGCGGCAAGCGCTCCGCAA
GCGCCGGTCAGCGCGCCGCGCGCGACCGGCGCCCCGCGAACCCCGCAGGCGCCGGCTCCGGTGCGTACCACC
GCGCCGGCAGGCAGCGACACCTATCGCACCGTTTCCAACGACACGCTCTGGGAGATCGCCCAGCGCAACCGT
ACCGATCGCGTTTCCGTACCCCAGGCGATGCTCGCGTTCCAGGAACTGAATCCGGGCGCCTTCGTCGATGGC
AACATCAACCGGCTGAAGAGCGGCCAGGTCCTGCGCATTCCCACCGAACAGCAGATGCTGGAGCGCTCGCCG
CGCGAGGCGCTGTCCCAGGTGCAGGCGCAGAACCAGAGCTGGCGCGGCAGCCGCAATCCGGCCGCGGGCACC
GCTGGCGCCAGGCAGTTGGATGCGACCCAGCGCAATGCCGCCGGGTCGGCGCCATCCAAGGTCGACGCCACG
GACAACCTGCGCCTGGTGTCTGGCGAGGGCAAGGCCAGCAAGGGTGCCGACAAGGGCGGGAAGGGCGACAGC
AAGGCGATCGCCGATACCCTGGCGGTGACCAAGGAAAGCCTCGATAGCACTCGCCGCGAGAACGAAGAACTG
CAGAGCCGCATGCAGGATCTGCAGAGCCAGCTGGACAAGCTGCAGAAGTTGATCCAGTTGAAGGACGCCCAG
TTGGCCAAGCTGCAAGGGCAGTTGGGCGCCGAAGGCCAGGGCGCAGCCCAGCCGAACGCAGCCCTGCCGGAT
GCGTCCCAGCCCAATGCAGCCGCGCAGGCGCCGGCTCAGCCCGGGACTCCCGCTGCGGCAGCGCCGACTCCT
GCTCCGGCCGGAGAAGCACCCGCCGCTCCGGCGCAGCCTCCGGTGGCGCCGCCGCCCGCGCCAGTTGCCGAG
AAGCCTCCGGCACCTGCCGTTCCGGCGCCCGCTCCGGTACAGGCGGCAGAACAGCCGGCACCGAGCTTCCTC
GACGAACTGCTGGCCAACCCGCTGTGGTTGGCGGTGATCGGCGGTAGTGCACTGCTGGCGTTGCTGGTGCTG
CTGATGATCCTGTCGCGGCGCAATGCGCAGAAAGAGAAGGAAGAAGCCCAGGCTTTCGCCGCGGATGCCGGC
GAGGAACAGGAGGATGCGCTGGACCTGGGAAAGGACGGCTTCGACGACCTGACCCTCGACGAGCCTGAACCG
CAGGTCGCAGCCGCTGCGCCGCAGGTCGAGAAGACCACTGCGCAGACTTCCGATGCGCTGGGCGAGGCCGAC
ATCTATATCGCCTACGGGCGTTTCAACCAGGCCGCCGAACTGTTGCAGAACGCCATCTACGACGAGCCGCAG
CGCACCGACCTGCGCCTCAAGCTGATGGAAGTCTATGCCGAGATGGGCGATCGCGAAGGTTTCGCTCGCCAG
GAAAACGAGCTGCGCGAAATCGGCGGCGCACAGCCGCAGGTCGAGCAGCTCAAGTCGCGCTACCCGGCAATG
GTCGCGGTCGCCGCGGTTGCCGGCCTGGCCGGCGCCAAGCTGGCGCAGGACGAGCTGGATAGCTTCAGCCTC
GACGACCTGTCGCTCGACGACAGCGGTCACGCGGCCAAGCCGGATGCGGCAGGACAGGATCTCGACGACGCC
TTCGACCTGAGCCTGGACGACCTGGGCGGCGGCGATCTTGGCAGCGACGACGTGCAGGCCGATCTCAAGTCC
GACAGCGGGGCGCTGGACGACCTGACCCTGGACAGCGATCTGGACCTGGCGGCCTCGACCGCGGCGGACAAG
CCTGTCGACGATCTCGACTTCGGCCTGGATTTCGCGGAGTTGGCAGAGACTCCGAGCCAACCCAAGCATGAC
GACCTGGGCGATTTCTCCCTGGATCTCGATGCGCCGGAAGACAAGCTTTCGGACGACGACTTCCTGCTTTCG
CTGAACGACGAGGTGCCCGCCGCGGCGCCAGCCAACAACGAATTCACCCTCGATACCGAGGCTGCCGAAGAG
CCGGCGTTGTCCCTGCCGGACGACTTCGACCTGTCGCTGGCCGACGAGCCGACGGAGCCGGCCGCTCCGGAG
AAGGGCGAGGACAGTTTCGCCGCCCAGTTGGACGAGGTGAGTGCGCAGTTGGACGAGTTGGCCAGCAACCTT
GACGAGCCGAAGAGCGCGGCGCCGAGTTTCTCCGCCGAGGATGCAGCGGTCGCCTCCGCCCTGGACGGAGAC
GCCGACGATGACTTCGACTTCCTCTCCGGTGCCGACGAAGCGGCGACCAAGCTGGATCTGGCTCGCGCCTAC
ATCGACATGGGCGATAGCGAAGGCGCGCGCGATATCCTCGACGAAGTCCTGGCCGAAGGTAACGACAGCCAG
CAGGCGGAAGCCCGCGAGTTGCTGGAGCGCCTGGCCTGA