ViewGene

Locus Name:
GeneID:
Location:

GeneID:1219
TrivialName: PA14_51000
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51000
PAO1 Ortholog Locus:PA1031
Sequence Length:1362
Protein Length:453
Start: 4531770
Stop: 4530409
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04420.1|AE004535_7 (AE004535) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 450/453 (99%), Positives = 452/453 (99%)
Sequence:
TTGCTCGGCGAGCGACTGGCGACCGCGCAACTGGCCCAGGACGGGCTGAATGCGCAGTTGGAGACCAGCAGG
GAGGCTTACCAGCAACTCGGCGAGCGCCATGCCAGGCTCTCCGGTGAGGTCGCCGCGCTGCGTCGGGAAGCC
GAGTTGATGGGGGAGGAGCGGCAACGGGCGTCCCAGGCGGAGGCACGTTGGGCCAGCGAGCGCCAGGGCCGG
GAAGAGGAAGTGCGTCGCCTGGCTTCCGAACGGGCTGCGCTGGCTGCGGAACTGCGCGAGCAGCAGGAAAGC
CACCAGCAGCGCCTGACCGACCTGCAGTCGGCCCGCGACGAGTTGCGGGCACAGTTCGCCGAACTGGCGGGA
AAGATCTTCGACGAACGCGAACAGCGTTTCGCCGAAACCAGTCAGCAGCGCCTGGGGCAGATGCTCGATCCG
CTCAAGGAGCGCATCCAGGCGTTCGAGAAGCGGGTGGAGGAAAGCTACCAGCAGGAAGCGCGCGAGCGTTTC
TCCCTGAGCAAGGAACTGGAGCGTCTGCAGCAGCTCAACCTGCGCCTGGGCGAGGAAGCGACCAACCTGACC
CGCGCGCTCAAGGGCCAGAAGACCCAGGGCAACTGGGGCGAACTGGTGCTGGAGCGGGTGCTCGAGCATGCG
GGCCTGGAAAAAGGCCGGGAATACGAGACCCAGGTCAGCCTGAAGGGCGCCGAGGGCGAACGCTTCCAGCCG
GACGTGCTGATCCGCCTGCCCGGCGACAAGCAGGTGGTGGTGGATGCCAAGGTCAGTCTCACGGCCTACCAG
CAGTACATCGCCGCTGACGACGATCTGCTGCGCCAGCAGGCGCTGAAGCAGCACGTAACGTCGTTGCGCAAC
CATGTGAAAGGCCTCTCCGGCAAGGACTATCGACGCCTGGAAGGGTTGCACAGCCTCGACTTCGTCCTGCTG
TTCATGCCGATCGAGGCGGCTTTTTCGACGGCCCTGCAGGCCGAGCCGAACCTGTTCCAGGACGCCTTCGCG
CAGAATATCGTGATCGTCAGCCCGACCACCCTGCTGGCCACCCTGCGGGTAATCGACAGCCTCTGGCGCCAG
GAGCGGCAGAACCAGAATGCGCGGGAAATCGCCGAACGTGCCGGTTCGCTGTATGACAAGTTCGTGCTCTTC
GTCCAGGACCTCGATGAGGTCGGTTCGCGCCTGCAGCAACTGGACAAGGCCTATGCCGCGGCGCGCAACAAG
CTCACCGAGGGACGTGGCAACCTGATCAGTCGCAGCGAGCAACTCAAGCTGCTCGGTGCCCGCGCCAGCAAG
AGCCTGCCGACGGACTGGCTGGACCGGGCGCTGGTGGCGCCCGTGGAAGAGGCCGGAGAGGAGTGA
Translation:
MLGERLATAQLAQDGLNAQLETSREAYQQLGERHARLSGEVAALRREAELMGEERQRASQAEARWASERQGR
EEEVRRLASERAALAAELREQQESHQQRLTDLQSARDELRAQFAELAGKIFDEREQRFAETSQQRLGQMLDP
LKERIQAFEKRVEESYQQEARERFSLSKELERLQQLNLRLGEEATNLTRALKGQKTQGNWGELVLERVLEHA
GLEKGREYETQVSLKGAEGERFQPDVLIRLPGDKQVVVDAKVSLTAYQQYIAADDDLLRQQALKQHVTSLRN
HVKGLSGKDYRRLEGLHSLDFVLLFMPIEAAFSTALQAEPNLFQDAFAQNIVIVSPTTLLATLRVIDSLWRQ
ERQNQNAREIAERAGSLYDKFVLFVQDLDEVGSRLQQLDKAYAAARNKLTEGRGNLISRSEQLKLLGARASK
SLPTDWLDRALVAPVEEAGEE*
AnnotationID:1228GeneID:1219
AnnotatorUID: danlee
Modification Date/Time: 2004-05-18 17:05:47
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1031, yigN
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1322, pfam02646
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG1322, Uncharacterized protein conserved in bacteria. Score: 307, 2e-84
pfam02646, RmuC, RmuC family. This family contains several bacterial RmuC DNA 
recombination proteins. Score; 300, 2e-82
Genomic Context:
Comment:
ReferenceID:14303
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19584
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:1219

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2202 PA1031_tr translation of PA1031 453 99.33 99.77 0 2225.0
73215 gb|AAG04420.1|AE004535_7 (AE004535) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 453 99.11 99.77 0 2223.0
73216 gb|AAO55244.1| (AE016862) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 497 72.43 80.88 49 1798.0
73217 gb|AAN67315.1|AE016357_8 (AE016780) conserved hypothetical protein [Pseudomonas putida KT2440] 500 70.40 77.60 52 1703.0
73239 gb|AAQ60144.1| (AE016918) probable periplasmic protein [Chromobacterium violaceum ATCC 12472] 498 41.76 60.44 50 911.0
GC ORFID: 44221How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1031Glimmer Score:
Start: 422138Stop: 423499
Length: 1362
Start Codon: TTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1031 translation of PA1031Homolog Bit Score 861.0
Other Homologs: psyr_15may02_Scaffold8_revised_gene7828 (ORF: BLASTX 724.0), t_PA1031 (ORF: GLIMMER)
GC ORF Sequence
TTGCTCGGCGAGCGACTGGCGACCGCGCAACTGGCCCAGGACGGGCTGAATGCGCAGTTGGAGACCAGCAGG
GAGGCTTACCAGCAACTCGGCGAGCGCCATGCCAGGCTCTCCGGTGAGGTCGCCGCGCTGCGTCGGGAAGCC
GAGTTGATGGGGGAGGAGCGGCAACGGGCGTCCCAGGCGGAGGCACGTTGGGCCAGCGAGCGCCAGGGCCGG
GAAGAGGAAGTGCGTCGCCTGGCTTCCGAACGGGCTGCGCTGGCTGCGGAACTGCGCGAGCAGCAGGAAAGC
CACCAGCAGCGCCTGACCGACCTGCAGTCGGCCCGCGACGAGTTGCGGGCACAGTTCGCCGAACTGGCGGGA
AAGATCTTCGACGAACGCGAACAGCGTTTCGCCGAAACCAGTCAGCAGCGCCTGGGGCAGATGCTCGATCCG
CTCAAGGAGCGCATCCAGGCGTTCGAGAAGCGGGTGGAGGAAAGCTACCAGCAGGAAGCGCGCGAGCGTTTC
TCCCTGAGCAAGGAACTGGAGCGTCTGCAGCAGCTCAACCTGCGCCTGGGCGAGGAAGCGACCAACCTGACC
CGCGCGCTCAAGGGCCAGAAGACCCAGGGCAACTGGGGCGAACTGGTGCTGGAGCGGGTGCTCGAGCATGCG
GGCCTGGAAAAAGGCCGGGAATACGAGACCCAGGTCAGCCTGAAGGGCGCCGAGGGCGAACGCTTCCAGCCG
GACGTGCTGATCCGCCTGCCCGGCGACAAGCAGGTGGTGGTGGATGCCAAGGTCAGTCTCACGGCCTACCAG
CAGTACATCGCCGCTGACGACGATCTGCTGCGCCAGCAGGCGCTGAAGCAGCACGTAACGTCGTTGCGCAAC
CATGTGAAAGGCCTCTCCGGCAAGGACTATCGACGCCTGGAAGGGTTGCACAGCCTCGACTTCGTCCTGCTG
TTCATGCCGATCGAGGCGGCTTTTTCGACGGCCCTGCAGGCCGAGCCGAACCTGTTCCAGGACGCCTTCGCG
CAGAATATCGTGATCGTCAGCCCGACCACCCTGCTGGCCACCCTGCGGGTAATCGACAGCCTCTGGCGCCAG
GAGCGGCAGAACCAGAATGCGCGGGAAATCGCCGAACGTGCCGGTTCGCTGTATGACAAGTTCGTGCTCTTC
GTCCAGGACCTCGATGAGGTCGGTTCGCGCCTGCAGCAACTGGACAAGGCCTATGCCGCGGCGCGCAACAAG
CTCACCGAGGGACGTGGCAACCTGATCAGTCGCAGCGAGCAACTCAAGCTGCTCGGTGCCCGCGCCAGCAAG
AGCCTGCCGACGGACTGGCTGGACCGGGCGCTGGTGGCGCCCGTGGAAGAGGCCGGAGAGGAGTGA