ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1217

TrivialName: PA14_61870

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_61870

PAO1 Ortholog Locus: PA4677

Sequence Length: 1239

Protein Length: 412

Start: 5519365

Stop: 5518127

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG08064.1|AE004881_7 (AE004881) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 410/412 (99%), Positives = 410/412 (99%)

Sequence:

ATGTGCGACACCCTGATCCTTCGCCACCAGGGCCAGACCTGGTTCGCCAAGAACAGCGACCGCGAGCCCGCC
GAACCGCAGCGTCTGCTGCGCCTGCCGGTGGTGCGCAACGATCCGGAAGCGCGCTTGCGCACCACCTACCTC
GACATTCCCCAGGCCGCCCAGCGGCATGCGCTGGTGATCAGCCAGCCGAGCTGGATCTGGGGCGCGGAAATG
GGCGTCAATGAGCACGGCGTGGCCATCGGCAACGAAGCGGTGTTCACCAAGCTGACCCGTCAGCGCGGCACC
GCGCTGCTCGGCATGGACCTGCTGCGCCTGGGACTGGAGCGCGGCGCCAGCGCCCGCGAGGCGCTGGAGGTG
ATCACCGGGTTGTTGCAGCGTTACGGCCAGGGCGGCCCGGCCGGCTACCGCGACAAGCGCATCCGCTACGAC
AACAGCTTCCTCATCGCCGACCCCGGCGAAGCCTGGGTGCTGGAAACCGCCGGCAACCTGTGGGCGGCGAAG
AAGGTCGAGCGCTGGGCCATCTCCAACGCCCTGACCCTTGGCCACGAATTCGACCTGTGCAGCCGCGACCTC
GAGGACCAGGCACGCCGCCAGGGCTGCTGGGATGGTCGCGGCGACTTCCACTTCGCGCGGGTCTTCGACACC
CGCCTGCTACCCTGGGTCGGCGGCGCGCACCGGCGCTGTCGGATCAACCAGCGCTTCCTCGACAGCCTGCCT
GGCGAGCCGGACTGGCACGCGCTGTTCGCCGCGCTGCGTCACCATGGCCCGCGCGGGGACCACTTCCGCCGC
CACAACAACCGCCAGGTATGCATGCACGCCGGCAGCTTCTGGCGGCCTTCGCAGACCACCGCCAGTCTGGTC
GCCCGCTTGCGCGACGACGGCCCGCTGTTGGCCGCCACCGGTACTTCGGCGCCGTGCCTGGGACTGTTCCAG
CCGCTGTCCTTCGATCCGGCCTCCGGCGCCGCCGTGCTCAGCCAGCCGCGCGAGGCGGTACAGGAGTCTCCC
TGGTGGCGCTTCGAGGCGGTGCACCGCCGCGCGCTCACCGACCGCGCCTTCCGCCGGCTCCTGCGCAGCGGC
CGCGATTGGCTGGAACGGGAACTCTTCGCCGACCTCGAACAGCCCGACTGGCCGCGCCTGGCAGAGGACGCC
GCAGCCTGGCACGCCTGTTGGCATGATCAGGTCGCCATGCAGCCGCTGGCGCAGCAGCGCTGGTGGCGTAGC
CACGCCGCGCTGTGA

Translation:

MCDTLILRHQGQTWFAKNSDREPAEPQRLLRLPVVRNDPEARLRTTYLDIPQAAQRHALVISQPSWIWGAEM
GVNEHGVAIGNEAVFTKLTRQRGTALLGMDLLRLGLERGASAREALEVITGLLQRYGQGGPAGYRDKRIRYD
NSFLIADPGEAWVLETAGNLWAAKKVERWAISNALTLGHEFDLCSRDLEDQARRQGCWDGRGDFHFARVFDT
RLLPWVGGAHRRCRINQRFLDSLPGEPDWHALFAALRHHGPRGDHFRRHNNRQVCMHAGSFWRPSQTTASLV
ARLRDDGPLLAATGTSAPCLGLFQPLSFDPASGAAVLSQPREAVQESPWWRFEAVHRRALTDRAFRRLLRSG
RDWLERELFADLEQPDWPRLAEDAAAWHACWHDQVAMQPLAQQRWWRSHAAL*

AnnotationID:1226 GeneID:1217

AnnotatorUID: diggins

Modification Date/Time: 2005-03-08 07:07:44

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA4677

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:2437

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:19580

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:37619

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 1217_cdd.html

URL:

Homologs By Global Alignment

Gene ID:1217

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2200 PA4677_tr translation of PA4677 412 99.51 99.51 0 2228.0

73123 gb|AAG08064.1|AE004881_7 (AE004881) hypothetical protein PA4677 [Pseudomonas aeruginosa PAO1] 412 99.51 99.51 0 2228.0

GC ORFID: `44219`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA4677`	Glimmer Score:
Start: `4783045`	Stop: `4781807`
Length: `1239`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA4677 translation of PA4677`	Homolog Bit Score `862.0`
Other Homologs: `t_PA4677 (ORF: GLIMMER)`
GC ORF Sequence
ATGTGCGACACCCTGATCCTTCGCCACCAGGGCCAGACCTGGTTCGCCAAGAACAGCGACCGCGAGCCCGCC GAACCGCAGCGTCTGCTGCGCCTGCCGGTGGTGCGCAACGATCCGGAAGCGCGCTTGCGCACCACCTACCTC GACATTCCCCAGGCCGCCCAGCGGCATGCGCTGGTGATCAGCCAGCCGAGCTGGATCTGGGGCGCGGAAATG GGCGTCAATGAGCACGGCGTGGCCATCGGCAACGAAGCGGTGTTCACCAAGCTGACCCGTCAGCGCGGCACC GCGCTGCTCGGCATGGACCTGCTGCGCCTGGGACTGGAGCGCGGCGCCAGCGCCCGCGAGGCGCTGGAGGTG ATCACCGGGTTGTTGCAGCGTTACGGCCAGGGCGGCCCGGCCGGCTACCGCGACAAGCGCATCCGCTACGAC AACAGCTTCCTCATCGCCGACCCCGGCGAAGCCTGGGTGCTGGAAACCGCCGGCAACCTGTGGGCGGCGAAG AAGGTCGAGCGCTGGGCCATCTCCAACGCCCTGACCCTTGGCCACGAATTCGACCTGTGCAGCCGCGACCTC GAGGACCAGGCACGCCGCCAGGGCTGCTGGGATGGTCGCGGCGACTTCCACTTCGCGCGGGTCTTCGACACC CGCCTGCTACCCTGGGTCGGCGGCGCGCACCGGCGCTGTCGGATCAACCAGCGCTTCCTCGACAGCCTGCCT GGCGAGCCGGACTGGCACGCGCTGTTCGCCGCGCTGCGTCACCATGGCCCGCGCGGGGACCACTTCCGCCGC CACAACAACCGCCAGGTATGCATGCACGCCGGCAGCTTCTGGCGGCCTTCGCAGACCACCGCCAGTCTGGTC GCCCGCTTGCGCGACGACGGCCCGCTGTTGGCCGCCACCGGTACTTCGGCGCCGTGCCTGGGACTGTTCCAG CCGCTGTCCTTCGATCCGGCCTCCGGCGCCGCCGTGCTCAGCCAGCCGCGCGAGGCGGTACAGGAGTCTCCC TGGTGGCGCTTCGAGGCGGTGCACCGCCGCGCGCTCACCGACCGCGCCTTCCGCCGGCTCCTGCGCAGCGGC CGCGATTGGCTGGAACGGGAACTCTTCGCCGACCTCGAACAGCCCGACTGGCCGCGCCTGGCAGAGGACGCC GCAGCCTGGCACGCCTGTTGGCATGATCAGGTCGCCATGCAGCCGCTGGCGCAGCAGCGCTGGTGGCGTAGC CACGCCGCGCTGTGA