ViewGene
Locus Name:
GeneID:
Location:

GeneID:1216
TrivialName: PA14_56470
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56470
PAO1 Ortholog Locus:PA4343
Sequence Length:1320
Protein Length:439
Start: 5036782
Stop: 5035463
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07731.1|AE004850_9 (AE004850) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 437/439 (99%), Positives = 438/439 (99%)
Sequence:
ATGCACGCTTGCCCGAGCGGTACCTCGCGTACCCGCCAGGTGGCGGCTGCCGTGATCGGCAACGCCCTGGAG
TGGTACGACTTCATCGTCTACGGCTTCCTTTCCAGCCTGATCGCCAGGCTGTTCTTCCCTTCCGGCGACGAG
TACACCTCGCTGTTGATGGCCCTGGCCACCTTCGGTGTCGGTTTCTTCATGCGTCCGGTCGGTGGGGTCCTG
CTCGGCCTGTATGCCGACCGCAGGGGACGCAAGGCGGCGATGCAACTGATCATCCTGCTGATGACGCTGTCC
ATCGCGATGATCGCCTTCGCCCCGACCTACGCGGCGATCGGCGTCGGCGCACCGTTGCTGATCGTGATCGCG
CGAATGCTGCAGGGTTTCGCCACCGGCGGCGAGTACGCCAGCGCCACGGCTTTCCTGGTGGAAAGCGCGCCA
CCGCACCGGCGCGGTCTCTACGGTTCCTGGCAATTGTTCGGCCAGTGCCTGGCGGTGTTCGCCGGTGCGGGG
ATGGGCGCGCTGGTCACCCATTGCCTGGACGCCGAGGCCCTGGAGAGCTGGGGCTGGCGGGTGCCGTTCCTG
TTCGGTCTGCTGATCGGTCCGGTGGGATTGTGGATCCGCCGCTACATGGGCGAGACCGAGGCCTTCCTCGAA
GCCATCCGGGAGCCCGGCGAGCGCCAGGGGCTGCTCGGCGTGCTGCGCGAATACCGGCGCAGCGTGCTGGTG
AGCATGGGCCTGACGGTGATCGGCACGGTGTCCTTCTACGTGGTGCTGGTGAATATGCCGACCTTCGCCCAC
AAGCAGTTGGGCCTGCCGCTGGACGAGGTGTTCATGGTGCAGATGGCTGCGGTGGCGCTGATGACCCTGGTA
ATCCCGTTGGCTGGGGGACTCTCCGACCGGGTCGGGCGGCGCCCGGTGCTGTTGGTCGCGACCCTGGCCTTC
ATGTTCATGGTCTATCCGCTGTTCGCTTGGGTCGCCGCGGCGCCGAGCCTGGGGCGCCTGCTGCTGATGCAA
CTGTTGCTGTGCACGGCGATCGGCGGCTTCTTCGGCCCGGCGCCGACCGCGGTGGCCGAGCAGTTTCCGGTG
CGGGTGCGTTCCACCGGCCTGGCGGTGGCGTATAACCTGGCGGTGATGCTGTTCGGCGGTTTCGCTCCGTTC
ATCGTCACCTGGCTCACCGAGGTCGGCGGCTCGCCAGTGGCGCCGGCGTTCTACGTGCTCGGCGCGGCCTTC
CTCGGGCTGCTCGCCACCCTCTATCTGCGGGAGGGCGCGACGCCCGCCCCGCGCCCCCGTGAACCGGCCCTG
GGCAAGCCGGCAAGGAGTCTGTGA
Translation:
MHACPSGTSRTRQVAAAVIGNALEWYDFIVYGFLSSLIARLFFPSGDEYTSLLMALATFGVGFFMRPVGGVL
LGLYADRRGRKAAMQLIILLMTLSIAMIAFAPTYAAIGVGAPLLIVIARMLQGFATGGEYASATAFLVESAP
PHRRGLYGSWQLFGQCLAVFAGAGMGALVTHCLDAEALESWGWRVPFLFGLLIGPVGLWIRRYMGETEAFLE
AIREPGERQGLLGVLREYRRSVLVSMGLTVIGTVSFYVVLVNMPTFAHKQLGLPLDEVFMVQMAAVALMTLV
IPLAGGLSDRVGRRPVLLVATLAFMFMVYPLFAWVAAAPSLGRLLLMQLLLCTAIGGFFGPAPTAVAEQFPV
RVRSTGLAVAYNLAVMLFGGFAPFIVTWLTEVGGSPVAPAFYVLGAAFLGLLATLYLREGATPAPRPREPAL
GKPARSL*
AnnotationID:1225GeneID:1216
AnnotatorUID: diggins
Modification Date/Time: 2004-03-14 15:03:30
Gene Name:
Confidence Code:3
GeneProduct:putative MFS transporter
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00083, KOG0569
Secondary Functional Category(ies):Membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
Appears to be a sugar transporter






   
Genomic Context:






   
Comment:


















    ReferenceID:2435




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17095




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1216_cdd.html


    		




 
URL:

















    ReferenceID:19578




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1216
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2198
                           PA4343_tr
                           translation of PA4343
                           439
                           99.54
                           99.77
                           0
                           2227.0
     

     
     
73107
                           gb|AAG07731.1|AE004850_9
                           (AE004850) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           439
                           99.54
                           99.77
                           0
                           2227.0
     

     
     
73108
                           emb|CAD17687.1|
                           (AL646079) PROBABLE SUGAR-PROTON SYMPORTER TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
                           447
                           47.42
                           62.41
                           14
                           1004.0
     

     
     
73110
                           gb|AAO56302.1|
                           (AE016865) proline/betaine transporter [Pseudomonas syringae pv. tomato str. DC3000]
                           449
                           46.10
                           60.35
                           21
                           979.0
     

     
     
73109
                           dbj|BAC45504.1|
                           (AP005935) blr0239 [Bradyrhizobium japonicum USDA 110]
                           476
                           41.80
                           59.45
                           60
                           981.0
     

     






      

          
GC ORFID: 44218How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4343Glimmer Score: 

          
Start: 4300458Stop: 4299139

          
Length: 1320


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4343 translation of PA4343Homolog Bit Score 862.0

          
Other Homologs:  psyr_15may02_Scaffold13_revised_gene2170 (ORF: BLASTX 382.0), t_PA0703 (ORF: BLASTX 291.0), t_PA4343 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCACGCTTGCCCGAGCGGTACCTCGCGTACCCGCCAGGTGGCGGCTGCCGTGATCGGCAACGCCCTGGAG 
TGGTACGACTTCATCGTCTACGGCTTCCTTTCCAGCCTGATCGCCAGGCTGTTCTTCCCTTCCGGCGACGAG 
TACACCTCGCTGTTGATGGCCCTGGCCACCTTCGGTGTCGGTTTCTTCATGCGTCCGGTCGGTGGGGTCCTG 
CTCGGCCTGTATGCCGACCGCAGGGGACGCAAGGCGGCGATGCAACTGATCATCCTGCTGATGACGCTGTCC 
ATCGCGATGATCGCCTTCGCCCCGACCTACGCGGCGATCGGCGTCGGCGCACCGTTGCTGATCGTGATCGCG 
CGAATGCTGCAGGGTTTCGCCACCGGCGGCGAGTACGCCAGCGCCACGGCTTTCCTGGTGGAAAGCGCGCCA 
CCGCACCGGCGCGGTCTCTACGGTTCCTGGCAATTGTTCGGCCAGTGCCTGGCGGTGTTCGCCGGTGCGGGG 
ATGGGCGCGCTGGTCACCCATTGCCTGGACGCCGAGGCCCTGGAGAGCTGGGGCTGGCGGGTGCCGTTCCTG 
TTCGGTCTGCTGATCGGTCCGGTGGGATTGTGGATCCGCCGCTACATGGGCGAGACCGAGGCCTTCCTCGAA 
GCCATCCGGGAGCCCGGCGAGCGCCAGGGGCTGCTCGGCGTGCTGCGCGAATACCGGCGCAGCGTGCTGGTG 
AGCATGGGCCTGACGGTGATCGGCACGGTGTCCTTCTACGTGGTGCTGGTGAATATGCCGACCTTCGCCCAC 
AAGCAGTTGGGCCTGCCGCTGGACGAGGTGTTCATGGTGCAGATGGCTGCGGTGGCGCTGATGACCCTGGTA 
ATCCCGTTGGCTGGGGGACTCTCCGACCGGGTCGGGCGGCGCCCGGTGCTGTTGGTCGCGACCCTGGCCTTC 
ATGTTCATGGTCTATCCGCTGTTCGCTTGGGTCGCCGCGGCGCCGAGCCTGGGGCGCCTGCTGCTGATGCAA 
CTGTTGCTGTGCACGGCGATCGGCGGCTTCTTCGGCCCGGCGCCGACCGCGGTGGCCGAGCAGTTTCCGGTG 
CGGGTGCGTTCCACCGGCCTGGCGGTGGCGTATAACCTGGCGGTGATGCTGTTCGGCGGTTTCGCTCCGTTC 
ATCGTCACCTGGCTCACCGAGGTCGGCGGCTCGCCAGTGGCGCCGGCGTTCTACGTGCTCGGCGCGGCCTTC 
CTCGGGCTGCTCGCCACCCTCTATCTGCGGGAGGGCGCGACGCCCGCCCCGCGCCCCCGTGAACCGGCCCTG 
GGCAAGCCGGCAAGGAGTCTGTGA