ViewGene
Locus Name:
GeneID:
Location:

GeneID:1215
TrivialName: PA14_20680
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20680
PAO1 Ortholog Locus:PA3355
Sequence Length:1305
Protein Length:434
Start: 1780802
Stop: 1782106
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06743.1|AE004757_12 (AE004757) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 433/434 (99%), Positives = 433/434 (99%)
Sequence:
ATGCGGCGGATTTTCTTCTCTTTTCGCGCTCTCTATTTCGCTACCCTGCTGATGCTCACCGGCTCCGGCCTG
CTCAGCACCTACCTGGCGCTGCGCCTGGCGGCGGACAAGGTCGACGGCCTGTGGGTCGGCGCGCTGATGGCA
GCCAACTACTTCGGCCTGGTGCTGGGCGGCAAGGTCGGTCACCGGCTGATCGCCCGGGTCGGCCACATCCGC
GCCTACGTCGCCTGCGCCGGGGTGGTCACCGCCGCGGTCCTCGGCCATGGCCTGCTGCCCTGGCTGCCGGCG
TGGATCGCCTTGCGCATGGTGATGGGCCTGGGCCTGATGTGCCAGTACATGGTGATCGAGAGCTGGCTCAAC
GAGCAGGCCGATGCCAGCCAGCGCGGCGCGGTGTTCGGCGGCTACATGGCGGCTTCCTACCTGGGCCTGGTG
CTCGGCCAGATGATCCTGGTGGCGCATCCGCAACTGGGGCCGGAATTGCTGATGCTGGTGGCCTTCTGTTTC
GCCCTGTGCCTGGTGCCGCTGGCCCTGACCCACAAGATCCACCCCGCGGCGCTGCGCCCGGCGCCGCTCGAA
CCACGTTTCTTCATCCGCCGGGTGCCGCAGTCGCTGACCACCGTATTGGTCTCGGGGCTGGTGGTCGGCTCC
TTCTATGGCCTGGCGCCGCTGTACGCCAACCAGTTGGGGTTGCCCAACGAGCAGGTCGGCCTGTACATGGGC
GCCTGCATCTTCGCCGGGCTGCTGGTGCAGTGGCCGCTCGGCTGGCTGTCCGACCGTCGCGACCGCGCCTGG
CTGATCCGCGCCTGCGCCATCCTGCTGTGCCTGTTCGCCTTGCCGCTGGCATTGTTGCAACAGATGCCGCTG
GCGTTGCTGCTGGCCCTGGGAATCGCCGCGAGCATGTTGCAGTTCACCCTCTATCCGCTGGCAGTGGCCTTT
TCCAACGACCATGTGGAGACCGAGCGACGGGTTTCGCTGACCGCCATGCTGCTGGTGACCTTCGGCGTCGGC
GCCTGCATCGGGCCGCTGGCGGCCGGCGCGCTGATGCGGCTGTTTGGCGCTAACATGCTATATGCGTTCGTC
AGCGCCTGCGCGCTGATCCTGGTCTGGCGGGTCCATCCGGAGAAGGTCAGCGGCCTGCACCGGGTCGACGAC
GCGCCGCTGCACCACGTGCCGACCCCGGACAACATGACCAGCTCCCCGCTGGTCGCGGCGCTCGACCCGCGG
GTAGACGAACAGGCGGTGCAGGAACAGATGGTCGATGGCGAGCCCGACGCGCCGCAGGCCGACGGCGCGATG
CAGAACTGA
Translation:
MRRIFFSFRALYFATLLMLTGSGLLSTYLALRLAADKVDGLWVGALMAANYFGLVLGGKVGHRLIARVGHIR
AYVACAGVVTAAVLGHGLLPWLPAWIALRMVMGLGLMCQYMVIESWLNEQADASQRGAVFGGYMAASYLGLV
LGQMILVAHPQLGPELLMLVAFCFALCLVPLALTHKIHPAALRPAPLEPRFFIRRVPQSLTTVLVSGLVVGS
FYGLAPLYANQLGLPNEQVGLYMGACIFAGLLVQWPLGWLSDRRDRAWLIRACAILLCLFALPLALLQQMPL
ALLLALGIAASMLQFTLYPLAVAFSNDHVETERRVSLTAMLLVTFGVGACIGPLAAGALMRLFGANMLYAFV
SACALILVWRVHPEKVSGLHRVDDAPLHHVPTPDNMTSSPLVAALDPRVDEQAVQEQMVDGEPDAPQADGAM
QN*
AnnotationID:1224GeneID:1215
AnnotatorUID: diggins
Modification Date/Time: 2005-04-17 17:05:17
Gene Name:
Confidence Code:3
GeneProduct:putative MFS transporter
Cell Localization:()
Synonyms:PA3355
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69976.1|AE016635_12 (AE016790) major facilitator family transporter [Pseudomonas putida
           KT2440]
          Length = 444

 Score =  630 bits (1625), Expect = e-180
 Identities = 314/436 (72%), Positives = 358/436 (82%), Gaps = 5/436 (1%)

>gb|AAO55440.1| (AE016862) major facilitator family transporter [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 465

 Score =  620 bits (1600), Expect = e-177
 Identities = 305/427 (71%), Positives = 359/427 (84%), Gaps = 3/427 (0%)

>gb|AAM84463.1|AE013691_2 (AE013691) permease of major facilitator superfamily [Yersinia
           pestis KIM]
          Length = 446

 Score =  470 bits (1210), Expect = e-132
 Identities = 239/425 (56%), Positives = 309/425 (72%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:2433




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19576




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32199




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1215_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1215
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2196
                           PA3355_tr
                           translation of PA3355
                           434
                           99.76
                           99.76
                           0
                           2227.0
     

     
     
73096
                           gb|AAG06743.1|AE004757_12
                           (AE004757) hypothetical protein PA3355 [Pseudomonas aeruginosa PAO1]
                           434
                           99.76
                           99.76
                           0
                           2227.0
     

     
     
73097
                           gb|AAN69976.1|AE016635_12
                           (AE016790) major facilitator family transporter [Pseudomonas putida KT2440]
                           446
                           70.40
                           80.26
                           14
                           1630.0
     

     
     
73098
                           gb|AAO55440.1|
                           (AE016862) major facilitator family transporter [Pseudomonas syringae pv. tomato str. DC3000]
                           466
                           65.66
                           77.89
                           33
                           1600.0
     

     
     
2197
                           PA4887_tr
                           translation of PA4887
                           448
                           57.14
                           69.19
                           24
                           1268.0
     

     






      

          
GC ORFID: 44217How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3355Glimmer Score: 

          
Start: 3173130Stop: 3171826

          
Length: 1305


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3355 translation of PA3355Homolog Bit Score 862.0

          
Other Homologs:  t_PA4887 (ORF: BLASTX 491.0), t_PA3355 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGGCGGATTTTCTTCTCTTTTCGCGCTCTCTATTTCGCTACCCTGCTGATGCTCACCGGCTCCGGCCTG 
CTCAGCACCTACCTGGCGCTGCGCCTGGCGGCGGACAAGGTCGACGGCCTGTGGGTCGGCGCGCTGATGGCA 
GCCAACTACTTCGGCCTGGTGCTGGGCGGCAAGGTCGGTCACCGGCTGATCGCCCGGGTCGGCCACATCCGC 
GCCTACGTCGCCTGCGCCGGGGTGGTCACCGCCGCGGTCCTCGGCCATGGCCTGCTGCCCTGGCTGCCGGCG 
TGGATCGCCTTGCGCATGGTGATGGGCCTGGGCCTGATGTGCCAGTACATGGTGATCGAGAGCTGGCTCAAC 
GAGCAGGCCGATGCCAGCCAGCGCGGCGCGGTGTTCGGCGGCTACATGGCGGCTTCCTACCTGGGCCTGGTG 
CTCGGCCAGATGATCCTGGTGGCGCATCCGCAACTGGGGCCGGAATTGCTGATGCTGGTGGCCTTCTGTTTC 
GCCCTGTGCCTGGTGCCGCTGGCCCTGACCCACAAGATCCACCCCGCGGCGCTGCGCCCGGCGCCGCTCGAA 
CCACGTTTCTTCATCCGCCGGGTGCCGCAGTCGCTGACCACCGTATTGGTCTCGGGGCTGGTGGTCGGCTCC 
TTCTATGGCCTGGCGCCGCTGTACGCCAACCAGTTGGGGTTGCCCAACGAGCAGGTCGGCCTGTACATGGGC 
GCCTGCATCTTCGCCGGGCTGCTGGTGCAGTGGCCGCTCGGCTGGCTGTCCGACCGTCGCGACCGCGCCTGG 
CTGATCCGCGCCTGCGCCATCCTGCTGTGCCTGTTCGCCTTGCCGCTGGCATTGTTGCAACAGATGCCGCTG 
GCGTTGCTGCTGGCCCTGGGAATCGCCGCGAGCATGTTGCAGTTCACCCTCTATCCGCTGGCAGTGGCCTTT 
TCCAACGACCATGTGGAGACCGAGCGACGGGTTTCGCTGACCGCCATGCTGCTGGTGACCTTCGGCGTCGGC 
GCCTGCATCGGGCCGCTGGCGGCCGGCGCGCTGATGCGGCTGTTTGGCGCTAACATGCTATATGCGTTCGTC 
AGCGCCTGCGCGCTGATCCTGGTCTGGCGGGTCCATCCGGAGAAGGTCAGCGGCCTGCACCGGGTCGACGAC 
GCGCCGCTGCACCACGTGCCGACCCCGGACAACATGACCAGCTCCCCGCTGGTCGCGGCGCTCGACCCGCGG 
GTAGACGAACAGGCGGTGCAGGAACAGATGGTCGATGGCGAGCCCGACGCGCCGCAGGCCGACGGCGCGATG 
CAGAACTGA