ViewGene
Locus Name:
GeneID:
Location:

GeneID:1214
TrivialName: PA14_27800
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27800
PAO1 Ortholog Locus:PA2810
Sequence Length:1332
Protein Length:443
Start: 2410876
Stop: 2409545
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06198.1|AE004708_4 (AE004708) probable two-component sensor [Pseudomonas aeruginosa PAO1]
Identities = 441/443 (99%), Positives = 442/443 (99%)
Sequence:
ATGAGCGCCGGGTTCGGCTCGCGGATGTCCCTCGGCGTCCGCCTGAGCCTGCTGTTCGCCGCCTGCACGGCG
GCGGTCTCGCTGATCGCCGGATTGATCTTCAGCAGGGCCATCGACGAGCATTTCGTCGAACTCGACCACCTG
GCGATGTCCGCCAAGCTCGCGGTGTTTCGCGACGAACTGCGCGGCCTCGGCTCGGAACAGCAGATGCGCCGC
CGCGAAGCGGAACTGCTGCGCGAACTGGCACGCCACCCCGACCTCGGCCTGCGCCTGAACGGCCCGGATGGC
AACCTCTGGTTCGAGCGCCTGCCGCAGCCTGCGCATCCCGGTCTGCCCGCCAACCGCGAACTCGGCGCCCCG
CTGGAGCCCGGCAACGACGCTTCGCCGCGACTCACCGTGATCCTCGACATCAGTCATCACCAGCACTTCCTG
CAACGCATGCGCCAGTTGATCTGGCTGACCATGAGCCTGTCGGCGCTGGCCACCGCGCTGCTCGGCGCCTGG
GCCACCGGCGCCAGCCTGGCGCCGCTGCGACGGATGCGCGAAGTCGCCGCGCGGGTTTCCGCCAACTCCCTC
ACCACCCGCCTCGACGCCAGCCGGATGCCGGAGGAGCTGCGCGGCCTGGCCGGCGAGCTGAACGCCATGCTG
GCGCGCCTGGAAGAAGCCTTCCAGCGCCTCTCGGCGTTCTCCGCCGACATCGCCCACGAGTTGCGCACCCCG
CTCACCAGTCTGCTGACCCAGACCCAGGTGGTATTGTCCCGCCCGCGCTCGCTGGAGGACTATCGCGAGGCC
CTGCACGGCAACCTCGAGGAGCTGGAACGGCTCACCGCGATGGTCAACGACATGCTGTTGCTGGCCAAGGCC
GACCACGGCCTGCTGGCGCCCAGCCGCCAGGCCCTGGACCTGGGCGCGGAAGTCGACTCGCTGCTGGAGTTC
TACCAGCCGCTGGCGGAAGACCACGATATCCGCCTGCTGCGCGAAGGCAGCCTGAGCCTGCCCGGCGACCGC
GGCATGCTGCGGCGGGTGCTGGCCAACCTGCTGGACAACGCCCTGCGCTTCACCGCCGATGGCGGAGAGATA
CGTATCCGTCTCGGCGACCGACGCCTGAGCGTGGAGAACCAGGGTCCGGCGATTCCTCCCGAGCGCTTGCCG
CGCCTGTTCGACCGGTTCTATCGTGCCGATCCGGCGCGCCGCGAAGGCCAGGGTGAACACGCCGGGCTCGGC
CTGGCGATCTGCCGCTCCATCGTCCAGGCCCACGGCGGCGAGATCCGCTGCGAGTCTGCCGACGGCTGGACC
CGTTTCGTCATCGATTTCGCTCGCCCGCGCCGATGA
Translation:
MSAGFGSRMSLGVRLSLLFAACTAAVSLIAGLIFSRAIDEHFVELDHLAMSAKLAVFRDELRGLGSEQQMRR
REAELLRELARHPDLGLRLNGPDGNLWFERLPQPAHPGLPANRELGAPLEPGNDASPRLTVILDISHHQHFL
QRMRQLIWLTMSLSALATALLGAWATGASLAPLRRMREVAARVSANSLTTRLDASRMPEELRGLAGELNAML
ARLEEAFQRLSAFSADIAHELRTPLTSLLTQTQVVLSRPRSLEDYREALHGNLEELERLTAMVNDMLLLAKA
DHGLLAPSRQALDLGAEVDSLLEFYQPLAEDHDIRLLREGSLSLPGDRGMLRRVLANLLDNALRFTADGGEI
RIRLGDRRLSVENQGPAIPPERLPRLFDRFYRADPARREGQGEHAGLGLAICRSIVQAHGGEIRCESADGWT
RFVIDFARPRR*
AnnotationID:1223GeneID:1214
AnnotatorUID: diggins
Modification Date/Time: 2005-04-06 10:10:31
Gene Name:
Confidence Code:3
GeneProduct:putative sensor histidine kinase
Cell Localization:()
Synonyms:PA2810
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0642
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67770.1|AE016408_8 (AE016782) sensor histidine kinase [Pseudomonas putida KT2440]
          Length = 450

 Score =  510 bits (1313), Expect = e-144
 Identities = 274/448 (61%), Positives = 330/448 (73%), Gaps = 14/448 (3%)








 
Structural Features:
COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]
CD-Length = 336 residues,  83.0% aligned
Score =  140 bits (353), Expect = 3e-34
Identities = 111/328 (33%), Positives = 161/328 (49%), Gaps = 19/328 (5%)








   
Genomic Context:






   
Comment:


















    ReferenceID:2431




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19574




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36237




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1214_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1214
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2194
                           PA2810_tr
                           translation of PA2810
                           443
                           99.54
                           99.77
                           0
                           2226.0
     

     
     
73079
                           gb|AAG06198.1|AE004708_4
                           (AE004708) probable two-component sensor [Pseudomonas aeruginosa PAO1]
                           443
                           99.54
                           99.77
                           0
                           2226.0
     

     
     
73080
                           gb|AAN67770.1|AE016408_8
                           (AE016782) sensor histidine kinase [Pseudomonas putida KT2440]
                           456
                           60.08
                           72.36
                           19
                           1322.0
     

     
     
73088
                           dbj|BAB34031.1|
                           (AP002552) putative 2-component sensor protein [Escherichia coli O157:H7]
                           491
                           34.62
                           49.49
                           57
                           637.0
     

     
     
73083
                           gb|AAG54903.1|AE005236_4
                           (AE005236) putative 2-component sensor protein [Escherichia coli O157:H7 EDL933]
                           491
                           34.62
                           49.49
                           57
                           637.0
     

     






      

          
GC ORFID: 44216How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2810Glimmer Score: 

          
Start: 2543050Stop: 2544381

          
Length: 1332


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2810 translation of PA2810Homolog Bit Score 862.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1702 (ORF: BLASTX 310.0), t_PA1438 (ORF: BLASTX 243.0), psyr_15may02_Scaffold6_revised_gene6559 (ORF: BLASTX 200.0), t_PA2810 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGCCGGGTTCGGCTCGCGGATGTCCCTCGGCGTCCGCCTGAGCCTGCTGTTCGCCGCCTGCACGGCG 
GCGGTCTCGCTGATCGCCGGATTGATCTTCAGCAGGGCCATCGACGAGCATTTCGTCGAACTCGACCACCTG 
GCGATGTCCGCCAAGCTCGCGGTGTTTCGCGACGAACTGCGCGGCCTCGGCTCGGAACAGCAGATGCGCCGC 
CGCGAAGCGGAACTGCTGCGCGAACTGGCACGCCACCCCGACCTCGGCCTGCGCCTGAACGGCCCGGATGGC 
AACCTCTGGTTCGAGCGCCTGCCGCAGCCTGCGCATCCCGGTCTGCCCGCCAACCGCGAACTCGGCGCCCCG 
CTGGAGCCCGGCAACGACGCTTCGCCGCGACTCACCGTGATCCTCGACATCAGTCATCACCAGCACTTCCTG 
CAACGCATGCGCCAGTTGATCTGGCTGACCATGAGCCTGTCGGCGCTGGCCACCGCGCTGCTCGGCGCCTGG 
GCCACCGGCGCCAGCCTGGCGCCGCTGCGACGGATGCGCGAAGTCGCCGCGCGGGTTTCCGCCAACTCCCTC 
ACCACCCGCCTCGACGCCAGCCGGATGCCGGAGGAGCTGCGCGGCCTGGCCGGCGAGCTGAACGCCATGCTG 
GCGCGCCTGGAAGAAGCCTTCCAGCGCCTCTCGGCGTTCTCCGCCGACATCGCCCACGAGTTGCGCACCCCG 
CTCACCAGTCTGCTGACCCAGACCCAGGTGGTATTGTCCCGCCCGCGCTCGCTGGAGGACTATCGCGAGGCC 
CTGCACGGCAACCTCGAGGAGCTGGAACGGCTCACCGCGATGGTCAACGACATGCTGTTGCTGGCCAAGGCC 
GACCACGGCCTGCTGGCGCCCAGCCGCCAGGCCCTGGACCTGGGCGCGGAAGTCGACTCGCTGCTGGAGTTC 
TACCAGCCGCTGGCGGAAGACCACGATATCCGCCTGCTGCGCGAAGGCAGCCTGAGCCTGCCCGGCGACCGC 
GGCATGCTGCGGCGGGTGCTGGCCAACCTGCTGGACAACGCCCTGCGCTTCACCGCCGATGGCGGAGAGATA 
CGTATCCGTCTCGGCGACCGACGCCTGAGCGTGGAGAACCAGGGTCCGGCGATTCCTCCCGAGCGCTTGCCG 
CGCCTGTTCGACCGGTTCTATCGTGCCGATCCGGCGCGCCGCGAAGGCCAGGGTGAACACGCCGGGCTCGGC 
CTGGCGATCTGCCGCTCCATCGTCCAGGCCCACGGCGGCGAGATCCGCTGCGAGTCTGCCGACGGCTGGACC 
CGTTTCGTCATCGATTTCGCTCGCCCGCGCCGATGA