ViewGene
Locus Name:
GeneID:
Location:

GeneID:1212
TrivialName: PA14_47540
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47540
PAO1 Ortholog Locus:PA1288
Sequence Length:1275
Protein Length:424
Start: 4234096
Stop: 4235370
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04677.1|AE004558_6 (AE004558) probable outer membrane protein precursor [Pseudomonas aeruginosa PAO1]
Identities = 423/424 (99%), Positives = 424/424 (100%)
Sequence:
ATGAAAACAATATGGTTTAAAACCTCTCTCGCACTGACCATTAGCGCTGTCTCCACCTACACCCTCGCCAAC
GGCATCGCCATCAACGAACAGAGCGCCAGCGGCGCCGGCACCGCCTACGCCGGCCGCGCCTCGTCCGCGCTC
GATGCCAGCACCATCTACGGCAACCCGGCCGGCCTGTCCAAGCTGAAACGCACCGAAGTCAGCGGCGGTCTG
GCCATCGTCAAGGCCAAGGACGACATCAGCCAGGCCCACAGCACCGCCCAGGGCAGCAACAAGGGCGACTCG
GTACCGCTGGCCGCCGTACCGTTCGGCTACTTCTCCACGCCGATCAACGAAGATTTCACTTTCGGCCTGGGC
ATCTACGTGCCCTACGGCATCATCAACGATTACGAAAACGGCTTCATGGGCAGCTCCCACGGCTCCTATAGC
AAGGTGCAGGTGATCACCGTGCAGCCGACCATCGCCTGGAAGATCAACGACAAGGTTTCCGTCGGCTTCGGT
CCGACCTTCAACCGCATCGACGGCCAGTTGAAGAACACCCTGGCCACCAATGGCCTGCTCGGCAGCAACGGC
GATACCAAGATCAACATCAAGGGCGACGACACTGCCATCGGCTACAACGTCGGCGTGATGGTCGACCTGACC
GACGACACCACCTGGGGCCTGACCTACCACTCCAAGGTCAAGTACCACCTGGGCGGCAACACCGAAGTGAAG
AACGCTCCGGGTGCCCTGGGCCTGAACGGCAAGTACGACGCCAAGCTGGACATCACCCTGCCGGAATCGGTG
GATACCTCCATCACCCACAAGTTCGACGACAAGTGGACGGGCTACCTGGGCGCCGTCTGGACCCGCTGGAGC
CGCCTGGAGAAGATCGAAGTGCGCAACAGCGGCGTACCGGCGCTCGGCCAGGCCCTGGGCTTCAACACCATC
GGCGAAGACCTGAACTGGCGCGACACCTGGTCCTTCTCGGTAGGTACCTCCTACCAGGCCACCCCGGAGTGG
GTGCTGCGTACCGGCTTTGCCTACGAGCCCTCGCCGACCACCAACGAGGACCGCAACGTGCGCATCCCGGTG
GGCGACCGCAAGGTCTTCACCGTCGGTGCCGGCTGGTCGCCGAACCAGGACCTGACCGTCGACGTGGCCTAC
GCCTACCTGTGGGAAACCACTGCCGGCGTCAACCAGGAAGGCAGCGCCCTGCAGCCGGCCTACAGCGCCAAG
TACGACAACAGCGCGCATGGCCTGACCGCCCAGGTCACCTATCGCTTCTGA
Translation:
MKTIWFKTSLALTISAVSTYTLANGIAINEQSASGAGTAYAGRASSALDASTIYGNPAGLSKLKRTEVSGGL
AIVKAKDDISQAHSTAQGSNKGDSVPLAAVPFGYFSTPINEDFTFGLGIYVPYGIINDYENGFMGSSHGSYS
KVQVITVQPTIAWKINDKVSVGFGPTFNRIDGQLKNTLATNGLLGSNGDTKINIKGDDTAIGYNVGVMVDLT
DDTTWGLTYHSKVKYHLGGNTEVKNAPGALGLNGKYDAKLDITLPESVDTSITHKFDDKWTGYLGAVWTRWS
RLEKIEVRNSGVPALGQALGFNTIGEDLNWRDTWSFSVGTSYQATPEWVLRTGFAYEPSPTTNEDRNVRIPV
GDRKVFTVGAGWSPNQDLTVDVAYAYLWETTAGVNQEGSALQPAYSAKYDNSAHGLTAQVTYRF*
AnnotationID:1221GeneID:1212
AnnotatorUID: diggins
Modification Date/Time: 2005-05-25 22:10:58
Gene Name:
Confidence Code:3
GeneProduct:putative outer membrane protein precursor
Cell Localization:(6) Outer membrane protein
Synonyms:ompP1
Cell Localization Confidence Code:3
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:putative long-chain fatty acid transporter
Functional Category Confidence Code:5
COGs:pfam03349,COG2067
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55240.1| (AE016861) outer membrane protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 424

 Score =  457 bits (1176), Expect = e-128
 Identities = 225/419 (53%), Positives = 292/419 (69%), Gaps = 5/419 (1%)

>gb|AAN67310.1|AE016357_3 (AE016780) long-chain fatty acid transporter, putative [Pseudomonas
           putida KT2440]
          Length = 421

 Score =  449 bits (1155), Expect = e-125
 Identities = 225/425 (52%), Positives = 291/425 (68%), Gaps = 5/425 (1%)

>gb|AAO54427.1| (AE016859) outer membrane protein P1, putative [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 422

 Score =  385 bits (989), Expect = e-106
 Identities = 195/426 (45%), Positives = 274/426 (64%), Gaps = 14/426 (3%)






 
Structural Features:
pfam03349, Toluene_X, Outer membrane protein transport 
protein (OMPP1/FadL/TodX).
CD-Length = 425 residues, 100.0% aligned
Score =  354 bits (909), Expect = 1e-98
Identities = 141/430 (32%), Positives = 216/430 (50%), Gaps = 24/430 (5%)

COG2067, FadL, Long-chain fatty acid transport protein 
[Lipid metabolism]
CD-Length = 440 residues, 100.0% aligned
Score =  349 bits (896), Expect = 4e-97
Identities = 148/448 (33%), Positives = 224/448 (50%), Gaps = 32/448 (7%)







   
Genomic Context:






   
Comment:
other possible gene name: fadL


















    ReferenceID:2427




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19570




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37518




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1212_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1212
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2192
                           PA1288_tr
                           translation of PA1288
                           424
                           99.76
                           99.99
                           0
                           2228.0
     

     
     
73065
                           gb|AAG04677.1|AE004558_6
                           (AE004558) probable outer membrane protein precursor [Pseudomonas aeruginosa PAO1]
                           424
                           99.76
                           99.99
                           0
                           2228.0
     

     
     
73066
                           gb|AAO55240.1|
                           (AE016861) outer membrane protein [Pseudomonas syringae pv. tomato str. DC3000]
                           429
                           53.14
                           68.76
                           10
                           1185.0
     

     
     
73067
                           gb|AAN67310.1|AE016357_3
                           (AE016780) long-chain fatty acid transporter, putative [Pseudomonas putida KT2440]
                           425
                           52.94
                           68.47
                           5
                           1165.0
     

     
     
73068
                           gb|AAO54427.1|
                           (AE016859) outer membrane protein P1, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           432
                           45.60
                           63.88
                           18
                           1003.0
     

     






      

          
GC ORFID: 44214How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1288Glimmer Score: 

          
Start: 719813Stop: 718539

          
Length: 1275


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1288 translation of PA1288Homolog Bit Score 862.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene129 (ORF: BLASTX 454.0), t_PA1288 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAACAATATGGTTTAAAACCTCTCTCGCACTGACCATTAGCGCTGTCTCCACCTACACCCTCGCCAAC 
GGCATCGCCATCAACGAACAGAGCGCCAGCGGCGCCGGCACCGCCTACGCCGGCCGCGCCTCGTCCGCGCTC 
GATGCCAGCACCATCTACGGCAACCCGGCCGGCCTGTCCAAGCTGAAACGCACCGAAGTCAGCGGCGGTCTG 
GCCATCGTCAAGGCCAAGGACGACATCAGCCAGGCCCACAGCACCGCCCAGGGCAGCAACAAGGGCGACTCG 
GTACCGCTGGCCGCCGTACCGTTCGGCTACTTCTCCACGCCGATCAACGAAGATTTCACTTTCGGCCTGGGC 
ATCTACGTGCCCTACGGCATCATCAACGATTACGAAAACGGCTTCATGGGCAGCTCCCACGGCTCCTATAGC 
AAGGTGCAGGTGATCACCGTGCAGCCGACCATCGCCTGGAAGATCAACGACAAGGTTTCCGTCGGCTTCGGT 
CCGACCTTCAACCGCATCGACGGCCAGTTGAAGAACACCCTGGCCACCAATGGCCTGCTCGGCAGCAACGGC 
GATACCAAGATCAACATCAAGGGCGACGACACTGCCATCGGCTACAACGTCGGCGTGATGGTCGACCTGACC 
GACGACACCACCTGGGGCCTGACCTACCACTCCAAGGTCAAGTACCACCTGGGCGGCAACACCGAAGTGAAG 
AACGCTCCGGGTGCCCTGGGCCTGAACGGCAAGTACGACGCCAAGCTGGACATCACCCTGCCGGAATCGGTG 
GATACCTCCATCACCCACAAGTTCGACGACAAGTGGACGGGCTACCTGGGCGCCGTCTGGACCCGCTGGAGC 
CGCCTGGAGAAGATCGAAGTGCGCAACAGCGGCGTACCGGCGCTCGGCCAGGCCCTGGGCTTCAACACCATC 
GGCGAAGACCTGAACTGGCGCGACACCTGGTCCTTCTCGGTAGGTACCTCCTACCAGGCCACCCCGGAGTGG 
GTGCTGCGTACCGGCTTTGCCTACGAGCCCTCGCCGACCACCAACGAGGACCGCAACGTGCGCATCCCGGTG 
GGCGACCGCAAGGTCTTCACCGTCGGTGCCGGCTGGTCGCCGAACCAGGACCTGACCGTCGACGTGGCCTAC 
GCCTACCTGTGGGAAACCACTGCCGGCGTCAACCAGGAAGGCAGCGCCCTGCAGCCGGCCTACAGCGCCAAG 
TACGACAACAGCGCGCATGGCCTGACCGCCCAGGTCACCTATCGCTTCTGA