ViewGene
Locus Name:
GeneID:
Location:

GeneID:1210
TrivialName: PA14_05810
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_05810
PAO1 Ortholog Locus:PA0444
Sequence Length:1284
Protein Length:427
Start: 513171
Stop: 514454
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03833.1|AE004481_9 (AE004481) N-carbamoyl-beta-alanine amidohydrolase [Pseudomonas aeruginosa PAO1]
Identities = 427/427 (100%), Positives = 427/427 (100%)
Sequence:
ATGAGCACTGCCCGGAACGTCCTGCAATCCACCCAGCGACACATCGATGGCCAGCGCCTCTGGCAATCGCTG
ATGGATCTCGCCCGCCTCGGCGCCACCGCCAAGGGTGGGGTCTGCCGCCTGGCCCTGAGCGATCTCGACCGC
CAGGCCCGCGATCTCTTCGTGCAATGGTGCGAAGCGGCCGGCTGCACGGTCAGCGTCGATCGGGTCGGCAAC
ATCTTCGCCCGTCGTCCCGGGCGTAACCCGGACTTGCCCCCGGTGATGACCGGTAGCCACATCGACACCCAG
CCCACCGGTGGCAAGTTCGACGGCTGCTTCGGGGTGATGGCCGGCCTCGAGGTGATCCGCACCCTCAACGAC
CTCGGGGTGGAAACCGAGGCGCCGCTGGAGGTGGTGGTGTGGACCAACGAGGAAGGCTCGCGCTTCGCGCCC
TGCATGATGGGCTCGGGCGTATTCGCCGGGAAGTTCACCCTGGAGGAGACCCTGGCCAAGCGCGATGCCGAC
GGTGTCAGCGTAGGCGAGGCGCTGGACGCCATCGGCTACGCGGGAGCGCGCGATTGTCTCGGACATCCGGTG
GGCGCCTATTTCGAGGCGCACATCGAACAGGGGCCGATCCTCGAGGACGAGGAGAAGACCATCGGCGTGGTG
CTCGGCGCGCTCGGGCAGAAATGGTTCGACCTGTCCCTGCGCGGCGTCGAGGCACACGCCGGGCCAACGCCG
ATGCACCTGCGCAAGGACGCCCTGGTCGGTGCCGCGGCGGTGGTCGAGGCGGTCAATCGCGCGGCCCTCGGC
CATCAGCCGCATGCTTGCGGCACGGTCGGCTGCCTGCACGCCTATCCCGGTTCGCGCAACGTGATACCCGGC
GAAGTGAAGATGACCCTGGACTTCCGCCATCTGCAACCGGAGCGCCTGGACTCGATGATCGCCGAAGTCCGC
CAGGTGATCGCCGCTACCTGCGAGAAGCATGGCTTGCAATACGAGCTGGTGCCGACCGCCGATTTCCCGCCG
CTGTACTTCGACCAGGGATGCGTCGGCGCGGTGCGCGAGGCGGCGCAGGCGCTGGGCATGCCGCAGATGGAC
ATCGTCAGCGGCGCCGGCCACGACGCGATCTTCCTCGCCGAACTCGGTCCGGCGGGGATGATCTTCGTGCCC
TGCGAGAACGGCATCAGCCACAACGAGATCGAGAACGCCAGCCCCGACGACCTGGCCGCCGGCTGCGCGGTG
CTGTTGCGGGCCATGCTCAAGGCCTCCGAGGCGATCGCCGGCGGCCGCCTGGCGGCCTGA
Translation:
MSTARNVLQSTQRHIDGQRLWQSLMDLARLGATAKGGVCRLALSDLDRQARDLFVQWCEAAGCTVSVDRVGN
IFARRPGRNPDLPPVMTGSHIDTQPTGGKFDGCFGVMAGLEVIRTLNDLGVETEAPLEVVVWTNEEGSRFAP
CMMGSGVFAGKFTLEETLAKRDADGVSVGEALDAIGYAGARDCLGHPVGAYFEAHIEQGPILEDEEKTIGVV
LGALGQKWFDLSLRGVEAHAGPTPMHLRKDALVGAAAVVEAVNRAALGHQPHACGTVGCLHAYPGSRNVIPG
EVKMTLDFRHLQPERLDSMIAEVRQVIAATCEKHGLQYELVPTADFPPLYFDQGCVGAVREAAQALGMPQMD
IVSGAGHDAIFLAELGPAGMIFVPCENGISHNEIENASPDDLAAGCAVLLRAMLKASEAIAGGRLAA*
AnnotationID:1219GeneID:1210
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 13:01:00
Gene Name:amaB
Confidence Code:2
GeneProduct:N-carbamoyl-beta-alanine amidohydrolase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0624,pfam01546
Secondary Functional Category(ies):
EC Number:3.5.1.87
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69626.1|AE016596_4 (AE016789) N-carbamoyl-beta-alanine amidohydrolase, putative
           [Pseudomonas putida KT2440]
          Length = 427

 Score =  763 bits (1970), Expect = 0.0
 Identities = 373/427 (87%), Positives = 398/427 (93%)

>gb|AAN66240.1|AE016252_8 (AE016776) N-carbamoyl-beta-alanine amidohydrolase, putative
           [Pseudomonas putida KT2440]
          Length = 425

 Score =  645 bits (1664), Expect = 0.0
 Identities = 315/403 (78%), Positives = 344/403 (85%)

>emb|CAE33141.1| (BX640445) N-carbamoyl-L-amino acid amidohydrolase [Bordetella
           bronchiseptica]
          Length = 415

 Score =  504 bits (1297), Expect = e-142
 Identities = 252/405 (62%), Positives = 300/405 (74%)






 
Structural Features:
COG0624, ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate 
desuccinylase and related deacylases 
[Amino acid transport and metabolism]
CD-Length = 409 residues,  99.5% aligned
Score =  206 bits (524), Expect = 5e-54
Identities = 122/425 (28%), Positives = 175/425 (41%), Gaps = 41/425 (9%)

pfam01546, Peptidase_M20, Peptidase family M20/M25/M40.
CD-Length = 378 residues,  95.8% aligned
Score =  146 bits (368), Expect = 6e-36
Identities = 92/405 (22%), Positives = 144/405 (35%), Gaps = 75/405 (18%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2423




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19566




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33765




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1210_cdd.html


    		




 
URL:

















    ReferenceID:35345




  
Author/Investigator(s):
        Batisse N, Weigel P, Lecocq M, Sakanyan V.





  
Title:
        Two amino acid amidohydrolase genes encoding L-stereospecific carbamoylase and aminoacylase are organized in a common operon in Bacillus stearothermophilus.




  
PubMed:
        9023955


MedLine:
        




    
Source:
Appl Environ Microbiol. 1997 Feb;63(2):763-6.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=9023955









           
Homologs By Global Alignment 

           

       



     
Gene ID:1210
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2190
                           PA0444_tr
                           translation of PA0444
                           427
                           99.99
                           99.99
                           0
                           2233.0
     

     
     
72981
                           gb|AAG03833.1|AE004481_9
                           (AE004481) N-carbamoyl-beta-alanine amidohydrolase [Pseudomonas aeruginosa PAO1]
                           427
                           99.99
                           99.99
                           0
                           2233.0
     

     
     
72982
                           gb|AAN69626.1|AE016596_4
                           (AE016789) N-carbamoyl-beta-alanine amidohydrolase, putative [Pseudomonas putida KT2440]
                           427
                           87.35
                           93.20
                           0
                           1970.0
     

     
     
72983
                           gb|AAN66240.1|AE016252_8
                           (AE016776) N-carbamoyl-beta-alanine amidohydrolase, putative [Pseudomonas putida KT2440]
                           434
                           73.96
                           80.41
                           16
                           1662.0
     

     
     
72985
                           emb|CAE36872.1|
                           (BX640427) N-carbamoyl-L-amino acid amidohydrolase [Bordetella parapertussis]
                           427
                           59.01
                           70.96
                           12
                           1289.0
     

     






      

          
GC ORFID: 44212How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0444Glimmer Score: 

          
Start: 6314513Stop: 6315796

          
Length: 1284


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0444 translation of PA0444Homolog Bit Score 864.0

          
Other Homologs:  t_PA0444 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCACTGCCCGGAACGTCCTGCAATCCACCCAGCGACACATCGATGGCCAGCGCCTCTGGCAATCGCTG 
ATGGATCTCGCCCGCCTCGGCGCCACCGCCAAGGGTGGGGTCTGCCGCCTGGCCCTGAGCGATCTCGACCGC 
CAGGCCCGCGATCTCTTCGTGCAATGGTGCGAAGCGGCCGGCTGCACGGTCAGCGTCGATCGGGTCGGCAAC 
ATCTTCGCCCGTCGTCCCGGGCGTAACCCGGACTTGCCCCCGGTGATGACCGGTAGCCACATCGACACCCAG 
CCCACCGGTGGCAAGTTCGACGGCTGCTTCGGGGTGATGGCCGGCCTCGAGGTGATCCGCACCCTCAACGAC 
CTCGGGGTGGAAACCGAGGCGCCGCTGGAGGTGGTGGTGTGGACCAACGAGGAAGGCTCGCGCTTCGCGCCC 
TGCATGATGGGCTCGGGCGTATTCGCCGGGAAGTTCACCCTGGAGGAGACCCTGGCCAAGCGCGATGCCGAC 
GGTGTCAGCGTAGGCGAGGCGCTGGACGCCATCGGCTACGCGGGAGCGCGCGATTGTCTCGGACATCCGGTG 
GGCGCCTATTTCGAGGCGCACATCGAACAGGGGCCGATCCTCGAGGACGAGGAGAAGACCATCGGCGTGGTG 
CTCGGCGCGCTCGGGCAGAAATGGTTCGACCTGTCCCTGCGCGGCGTCGAGGCACACGCCGGGCCAACGCCG 
ATGCACCTGCGCAAGGACGCCCTGGTCGGTGCCGCGGCGGTGGTCGAGGCGGTCAATCGCGCGGCCCTCGGC 
CATCAGCCGCATGCTTGCGGCACGGTCGGCTGCCTGCACGCCTATCCCGGTTCGCGCAACGTGATACCCGGC 
GAAGTGAAGATGACCCTGGACTTCCGCCATCTGCAACCGGAGCGCCTGGACTCGATGATCGCCGAAGTCCGC 
CAGGTGATCGCCGCTACCTGCGAGAAGCATGGCTTGCAATACGAGCTGGTGCCGACCGCCGATTTCCCGCCG 
CTGTACTTCGACCAGGGATGCGTCGGCGCGGTGCGCGAGGCGGCGCAGGCGCTGGGCATGCCGCAGATGGAC 
ATCGTCAGCGGCGCCGGCCACGACGCGATCTTCCTCGCCGAACTCGGTCCGGCGGGGATGATCTTCGTGCCC 
TGCGAGAACGGCATCAGCCACAACGAGATCGAGAACGCCAGCCCCGACGACCTGGCCGCCGGCTGCGCGGTG 
CTGTTGCGGGCCATGCTCAAGGCCTCCGAGGCGATCGCCGGCGGCCGCCTGGCGGCCTGA