ViewGene
Locus Name:
GeneID:
Location:

GeneID:1209
TrivialName: PA14_70920
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70920
PAO1 Ortholog Locus:PA5370
Sequence Length:1317
Protein Length:438
Start: 6319545
Stop: 6318229
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08755.1|AE004949_2 (AE004949) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 437/438 (99%), Positives = 438/438 (100%)
Sequence:
ATGCCATCCGCGAATGCTCCCGAGGCGCCGGCCCAGCGTCCATTGACCCGCAGCGACTACAAGACCCTGTCC
CTCTCCGCCCTGGGTGGAGCGCTGGAGTTCTACGACTTCATCATCTTCGTGTTCTTCGCCACCGTGGTCGGC
AAGCTGTTCTTCCCGGCGGACATGCCGGAATGGCTGCGTCAGCTGCAAACCTTCGGCCTGTTCGCCGCCGGC
TACCTGGCGCGGCCGCTGGGCGGCGTGATCATGGCCCACTTCGGCGACCTGCTCGGGCGCAAGCGCATGTTC
ACCCTGAGCATCTTCATGATGGCGGTGCCGACCCTGATCATGGGCCTGCTTCCGACCTACGCGCAGATCGGC
ATCTGGGCGCCCCTGGCGCTGCTCCTGCTGAGGGTGATCCAGGGCGCCGCGATTGGCGGGGAGGTACCGGGG
GCCTGGGTCTTCGTCGCCGAGCATGTACCGGCACGGCATGTCGGTTATGCCTGCGGGACGCTGACTTCCGGC
CTGACGGCGGGCATCCTGCTGGGCTCGCTGGTGGCTACTGCGATCAATAGCTTCTATAGCGCGACAGAGGTG
CAGGACTACGCCTGGCGGATACCCTTCCTGCTCGGCGGGGTGTTCGGCCTGTTCTCGGTCTATCTGCGCCGC
TGGCTGCACGAGACGCCGGTATTCGCCGAGCTGCAGCAACGCAAGGCACTGGCAGAGGAAGTGCCGTTGAAA
GCGGTGGTCCGCGATCATCGTGGCGCCGTCCTGGTGTCGATGCTGCTGACCTGGGTGCTGTCGGCCGCGATC
GTGGTGGTCATCCTGATGACCCCTACCGTTCTGCAGAGCGTATACGGCTTCGATGCCGCCACGGCGCTCAAG
GCCAACAGCCTGGCGATCGTCTGCCTGACCCTTGGCTGCATCGTCGCCGGGCGCATGGCGGATCGTTTCGGC
GCGGGGCTGACTTTCGTTGCCGGTAGCGTGCTACTGGCGCTGGTGTCCTGGAGCTTCTACGGCAACCTCAAG
GCCCACCCGGACTGGCTCTTTCCTTTATATGCACTGACCGGCTTCTTCGTCGGCATCGTCGGCGCCGTTCCC
TACGTGATGGTCAATGCGTTCCCACCGGTTGTGCGTTTCTCCGGCCTGTCCTTTTCCTACAACCTGGCCTAC
GCCATCTTCGGTGGGCTGACGCCGATGGCGGTGGCCCTGCTGCTCAAGCAGAGCCCGATGGGGCCGGCTTAT
TACGTGGTGACTCTGTGCCTGGTCGGCTTCCTCGTCGGGCTCTACCTGCTGGCGCAGAAAAAGCCGGCTGGC
GAGGCGGTTTCGGTGGGGTGA
Translation:
MPSANAPEAPAQRPLTRSDYKTLSLSALGGALEFYDFIIFVFFATVVGKLFFPADMPEWLRQLQTFGLFAAG
YLARPLGGVIMAHFGDLLGRKRMFTLSIFMMAVPTLIMGLLPTYAQIGIWAPLALLLLRVIQGAAIGGEVPG
AWVFVAEHVPARHVGYACGTLTSGLTAGILLGSLVATAINSFYSATEVQDYAWRIPFLLGGVFGLFSVYLRR
WLHETPVFAELQQRKALAEEVPLKAVVRDHRGAVLVSMLLTWVLSAAIVVVILMTPTVLQSVYGFDAATALK
ANSLAIVCLTLGCIVAGRMADRFGAGLTFVAGSVLLALVSWSFYGNLKAHPDWLFPLYALTGFFVGIVGAVP
YVMVNAFPPVVRFSGLSFSYNLAYAIFGGLTPMAVALLLKQSPMGPAYYVVTLCLVGFLVGLYLLAQKKPAG
EAVSVG*
AnnotationID:1218GeneID:1209
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 08:08:50
Gene Name:
Confidence Code:3
GeneProduct:putative major facilitator family transporter
Cell Localization:()
Synonyms:PA5370
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00083
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58907.1| (AE016876) major facilitator family transporter [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 445

 Score =  684 bits (1765), Expect = 0.0
 Identities = 337/429 (78%), Positives = 377/429 (87%)

>gb|AAN70895.1|AE016733_7 (AE016794) major facilitator family transporter [Pseudomonas putida
           KT2440]
          Length = 429

 Score =  683 bits (1762), Expect = 0.0
 Identities = 337/417 (80%), Positives = 371/417 (88%)

>gb|AAM87257.1|AE013974_5 (AE013974) putative proline/betaine transporter [Yersinia pestis
           KIM]
          Length = 462

 Score =  586 bits (1510), Expect = e-166
 Identities = 286/412 (69%), Positives = 339/412 (82%)








 
Structural Features:
pfam00083, Sugar_tr, Sugar (and other) transporter.
CD-Length = 448 residues,  95.8% aligned
Score =   99 bits (249), Expect = 4e-22
Identities = 93/443 (20%), Positives = 169/443 (38%), Gaps = 56/443 (12%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2421




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19564




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34710




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1209_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1209
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2189
                           PA5370_tr
                           translation of PA5370
                           438
                           99.77
                           99.99
                           0
                           2233.0
     

     
     
72962
                           gb|AAG08755.1|AE004949_2
                           (AE004949) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           438
                           99.77
                           99.99
                           0
                           2233.0
     

     
     
72964
                           gb|AAN70895.1|AE016733_7
                           (AE016794) major facilitator family transporter [Pseudomonas putida KT2440]
                           441
                           77.32
                           85.71
                           15
                           1763.0
     

     
     
72963
                           gb|AAO58907.1|
                           (AE016876) major facilitator family transporter [Pseudomonas syringae pv. tomato str. DC3000]
                           457
                           73.96
                           83.15
                           31
                           1767.0
     

     
     
72967
                           gb|AAQ60569.1|
                           (AE016920) probable MFS transporter [Chromobacterium violaceum ATCC 12472]
                           440
                           63.86
                           76.59
                           5
                           1476.0
     

     






      

          
GC ORFID: 44211How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5370Glimmer Score: 

          
Start: 5583234Stop: 5581918

          
Length: 1317


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5370 translation of PA5370Homolog Bit Score 864.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6379 (ORF: BLASTX 431.0), t_PA5370 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCATCCGCGAATGCTCCCGAGGCGCCGGCCCAGCGTCCATTGACCCGCAGCGACTACAAGACCCTGTCC 
CTCTCCGCCCTGGGTGGAGCGCTGGAGTTCTACGACTTCATCATCTTCGTGTTCTTCGCCACCGTGGTCGGC 
AAGCTGTTCTTCCCGGCGGACATGCCGGAATGGCTGCGTCAGCTGCAAACCTTCGGCCTGTTCGCCGCCGGC 
TACCTGGCGCGGCCGCTGGGCGGCGTGATCATGGCCCACTTCGGCGACCTGCTCGGGCGCAAGCGCATGTTC 
ACCCTGAGCATCTTCATGATGGCGGTGCCGACCCTGATCATGGGCCTGCTTCCGACCTACGCGCAGATCGGC 
ATCTGGGCGCCCCTGGCGCTGCTCCTGCTGAGGGTGATCCAGGGCGCCGCGATTGGCGGGGAGGTACCGGGG 
GCCTGGGTCTTCGTCGCCGAGCATGTACCGGCACGGCATGTCGGTTATGCCTGCGGGACGCTGACTTCCGGC 
CTGACGGCGGGCATCCTGCTGGGCTCGCTGGTGGCTACTGCGATCAATAGCTTCTATAGCGCGACAGAGGTG 
CAGGACTACGCCTGGCGGATACCCTTCCTGCTCGGCGGGGTGTTCGGCCTGTTCTCGGTCTATCTGCGCCGC 
TGGCTGCACGAGACGCCGGTATTCGCCGAGCTGCAGCAACGCAAGGCACTGGCAGAGGAAGTGCCGTTGAAA 
GCGGTGGTCCGCGATCATCGTGGCGCCGTCCTGGTGTCGATGCTGCTGACCTGGGTGCTGTCGGCCGCGATC 
GTGGTGGTCATCCTGATGACCCCTACCGTTCTGCAGAGCGTATACGGCTTCGATGCCGCCACGGCGCTCAAG 
GCCAACAGCCTGGCGATCGTCTGCCTGACCCTTGGCTGCATCGTCGCCGGGCGCATGGCGGATCGTTTCGGC 
GCGGGGCTGACTTTCGTTGCCGGTAGCGTGCTACTGGCGCTGGTGTCCTGGAGCTTCTACGGCAACCTCAAG 
GCCCACCCGGACTGGCTCTTTCCTTTATATGCACTGACCGGCTTCTTCGTCGGCATCGTCGGCGCCGTTCCC 
TACGTGATGGTCAATGCGTTCCCACCGGTTGTGCGTTTCTCCGGCCTGTCCTTTTCCTACAACCTGGCCTAC 
GCCATCTTCGGTGGGCTGACGCCGATGGCGGTGGCCCTGCTGCTCAAGCAGAGCCCGATGGGGCCGGCTTAT 
TACGTGGTGACTCTGTGCCTGGTCGGCTTCCTCGTCGGGCTCTACCTGCTGGCGCAGAAAAAGCCGGCTGGC 
GAGGCGGTTTCGGTGGGGTGA