ViewGene
Locus Name:
GeneID:
Location:

GeneID:1207
TrivialName: PA14_64790
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64790
PAO1 Ortholog Locus:PA4903
Sequence Length:1335
Protein Length:444
Start: 5774078
Stop: 5772744
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08288.1|AE004903_6 (AE004903) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 443/444 (99%), Positives = 443/444 (99%)
Sequence:
ATGAACCGGGACTTGCGCCGCGCTCTCGACGACGAACCGATGCGGCCGTTCCAGTGGCTGGCGGTGGCTGTG
TGCATCGTGCTCAACCTGATCGATGGCTTCGACGTGCTGGTGATGGCCTTCACCGCATCTTCGGTGGCCGCC
GAATGGAACCTGGGCGGCGCCGAGATCGGCCTGCTGCTCAGCGCCGGCCTTTTCGGCATGGCCGCCGGCTCG
CTGTTCATCGCGCCCTGGGCCGACCGCTGGGGGCGCCGCCCGCTGATCCTCGCCTGCCTGGCGCTGTCGGGC
CTGGGCATGCTCGCCTCGGCGCTGAGCCAGGCGGCCTGGCAACTGGCGTTGCTGCGCGGGCTGACCGGGCTG
GGTATCGGCGGCATCCTCGCCAGCAGCAACGTGATCGCCAGCGAGTACGCCTCGCGCCGTTGGCGCGGCCTG
GCGGTAAGCCTGCAATCCACCGGCTACGCGCTCGGCGCGACCCTTGGCGGACTGCTCGCGGTATGGCTGATC
GGCGCCTGGGGCTGGCGCTCGGTGTTCGTCTTCGGCGCTGGCCTGACCCTGGCGGTGATCCCGCTGGTCTGC
CTGTGCCTGCCGGAGTCGCTGGACTTCCTCCTGGCGCGCCGGCCGCCGCGGGCGTTGCAACGGGTCAACGCG
CTGGCCCGGCGCCTGGGCCGCGCGGCGCTCGCCGAACTGCCGAGCCCGCCTGGCGGCGGAGCGGAGCACGGT
AGCCGCCTCGCCCGGTTGCTCTGCGTCGCCCAGCGACGCACCACGCTGCTGCTCTGGGCGCTGTTCTTCCTG
GTGATGTTCGGCTTCTACTTCATCATGAGCTGGACGCCGAAGCTGCTGGTCGCCGCCGGCCTGTCCACCGCC
CAGGGCATCACCGGCGGCACCCTGCTGAGCATCGGCGGGATCTTCGGTGCCGCCTTGCTCGGCGGGCTTGCC
GCGCGCTTTCGCCTGGAACGGGTGCTGGCGCTGTTCATGCTGCTTACCGCCGCTCTGCTCGCGCTGTTCTCG
CTGAGCGCCGGGCTGCCCGGCGCGGCCTTGCCGCTGGGACTGCTGATCGGGCTTTGCGCCAACGCCTGCGTG
GCCGGCCTGTATGCCCTGGCGCCGAGCCTCTACGACGCCTCGGTGCGCGCCACCGGGGTCGGCTGGGGGATC
GGCGTCGGTCGCGGTGGGGCGATCCTCTCGCCGCTGGTGGCCGGGCTCCTGCTCGACGACGGCTGGCAGCCG
CTGTCCCTCTATGGGGCGTTCGCGGCGGTGTTCGTCGCCGCGGCCGCCGTGTTGCCGCTGCTCGGTGCGCGG
CGTCGCGAGCGCTCGCCGACGCTGGGAGACGCTGCGTGA
Translation:
MNRDLRRALDDEPMRPFQWLAVAVCIVLNLIDGFDVLVMAFTASSVAAEWNLGGAEIGLLLSAGLFGMAAGS
LFIAPWADRWGRRPLILACLALSGLGMLASALSQAAWQLALLRGLTGLGIGGILASSNVIASEYASRRWRGL
AVSLQSTGYALGATLGGLLAVWLIGAWGWRSVFVFGAGLTLAVIPLVCLCLPESLDFLLARRPPRALQRVNA
LARRLGRAALAELPSPPGGGAEHGSRLARLLCVAQRRTTLLLWALFFLVMFGFYFIMSWTPKLLVAAGLSTA
QGITGGTLLSIGGIFGAALLGGLAARFRLERVLALFMLLTAALLALFSLSAGLPGAALPLGLLIGLCANACV
AGLYALAPSLYDASVRATGVGWGIGVGRGGAILSPLVAGLLLDDGWQPLSLYGAFAAVFVAAAAVLPLLGAR
RRERSPTLGDAA*
AnnotationID:1216GeneID:1207
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 13:01:09
Gene Name:
Confidence Code:3
GeneProduct:putative MFS transporter
Cell Localization:()
Synonyms:vanK
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative vanillate transporter
Functional Category Confidence Code:5
COGs:pfam00083,COG2814
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL27558.1|AF425229_3 (AF425229) vanillate transporter VanK [Pseudomonas putida]
          Length = 443

 Score =  631 bits (1627), Expect = e-180
 Identities = 329/445 (73%), Positives = 370/445 (83%), Gaps = 4/445 (0%)

>gb|AAN69335.1|AE016571_1 (AE016788) major facilitator family transporter [Pseudomonas putida
           KT2440]
          Length = 446

 Score =  625 bits (1611), Expect = e-178
 Identities = 329/445 (73%), Positives = 369/445 (82%), Gaps = 4/445 (0%)








 
Structural Features:
pfam00083, Sugar_tr, Sugar (and other) transporter.
CD-Length = 448 residues,  94.6% aligned
Score =  101 bits (254), Expect = 1e-22
Identities = 86/428 (20%), Positives = 153/428 (35%), Gaps = 31/428 (7%)

COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]
CD-Length = 394 residues,  99.0% aligned
Score = 82.9 bits (205), Expect = 7e-17
Identities = 103/428 (24%), Positives = 152/428 (35%), Gaps = 38/428 (8%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2417




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19560




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35157




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1207_cdd.html


    		




 
URL:

















    ReferenceID:35934




  
Author/Investigator(s):
        Hong HJ, Hutchings MI, Neu JM, Wright GD, Paget MS, Buttner MJ.





  
Title:
        Characterization of an inducible vancomycin resistance system in Streptomyces coelicolor reveals a novel gene (vanK) required for drug resistance.




  
PubMed:
        15130128


MedLine:
        




    
Source:
Mol Microbiol. 2004 May;52(4):1107-21.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15130128









           
Homologs By Global Alignment 

           

       



     
Gene ID:1207
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2187
                           PA4903_tr
                           translation of PA4903
                           444
                           99.77
                           99.77
                           0
                           2233.0
     

     
     
72901
                           gb|AAG08288.1|AE004903_6
                           (AE004903) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           444
                           99.77
                           99.77
                           0
                           2233.0
     

     
     
72902
                           gb|AAL27558.1|AF425229_3
                           (AF425229) vanillate transporter VanK [Pseudomonas putida]
                           446
                           73.76
                           82.95
                           5
                           1632.0
     

     
     
72903
                           gb|AAN69335.1|AE016571_1
                           (AE016788) major facilitator family transporter [Pseudomonas putida KT2440]
                           448
                           73.43
                           82.36
                           6
                           1615.0
     

     
     
72904
                           gb|AAC27108.1|
                           (AF009672) VanK [Acinetobacter sp. ADP1]
                           449
                           52.78
                           70.15
                           6
                           1178.0
     

     






      

          
GC ORFID: 44209How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4903Glimmer Score: 

          
Start: 5037759Stop: 5036425

          
Length: 1335


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4903 translation of PA4903Homolog Bit Score 864.0

          
Other Homologs:  t_PA4903 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACCGGGACTTGCGCCGCGCTCTCGACGACGAACCGATGCGGCCGTTCCAGTGGCTGGCGGTGGCTGTG 
TGCATCGTGCTCAACCTGATCGATGGCTTCGACGTGCTGGTGATGGCCTTCACCGCATCTTCGGTGGCCGCC 
GAATGGAACCTGGGCGGCGCCGAGATCGGCCTGCTGCTCAGCGCCGGCCTTTTCGGCATGGCCGCCGGCTCG 
CTGTTCATCGCGCCCTGGGCCGACCGCTGGGGGCGCCGCCCGCTGATCCTCGCCTGCCTGGCGCTGTCGGGC 
CTGGGCATGCTCGCCTCGGCGCTGAGCCAGGCGGCCTGGCAACTGGCGTTGCTGCGCGGGCTGACCGGGCTG 
GGTATCGGCGGCATCCTCGCCAGCAGCAACGTGATCGCCAGCGAGTACGCCTCGCGCCGTTGGCGCGGCCTG 
GCGGTAAGCCTGCAATCCACCGGCTACGCGCTCGGCGCGACCCTTGGCGGACTGCTCGCGGTATGGCTGATC 
GGCGCCTGGGGCTGGCGCTCGGTGTTCGTCTTCGGCGCTGGCCTGACCCTGGCGGTGATCCCGCTGGTCTGC 
CTGTGCCTGCCGGAGTCGCTGGACTTCCTCCTGGCGCGCCGGCCGCCGCGGGCGTTGCAACGGGTCAACGCG 
CTGGCCCGGCGCCTGGGCCGCGCGGCGCTCGCCGAACTGCCGAGCCCGCCTGGCGGCGGAGCGGAGCACGGT 
AGCCGCCTCGCCCGGTTGCTCTGCGTCGCCCAGCGACGCACCACGCTGCTGCTCTGGGCGCTGTTCTTCCTG 
GTGATGTTCGGCTTCTACTTCATCATGAGCTGGACGCCGAAGCTGCTGGTCGCCGCCGGCCTGTCCACCGCC 
CAGGGCATCACCGGCGGCACCCTGCTGAGCATCGGCGGGATCTTCGGTGCCGCCTTGCTCGGCGGGCTTGCC 
GCGCGCTTTCGCCTGGAACGGGTGCTGGCGCTGTTCATGCTGCTTACCGCCGCTCTGCTCGCGCTGTTCTCG 
CTGAGCGCCGGGCTGCCCGGCGCGGCCTTGCCGCTGGGACTGCTGATCGGGCTTTGCGCCAACGCCTGCGTG 
GCCGGCCTGTATGCCCTGGCGCCGAGCCTCTACGACGCCTCGGTGCGCGCCACCGGGGTCGGCTGGGGGATC 
GGCGTCGGTCGCGGTGGGGCGATCCTCTCGCCGCTGGTGGCCGGGCTCCTGCTCGACGACGGCTGGCAGCCG 
CTGTCCCTCTATGGGGCGTTCGCGGCGGTGTTCGTCGCCGCGGCCGCCGTGTTGCCGCTGCTCGGTGCGCGG 
CGTCGCGAGCGCTCGCCGACGCTGGGAGACGCTGCGTGA