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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG06854.1|AE004767_5 (AE004767) probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
Identities = 445/446 (99%), Positives = 445/446 (99%)
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Sequence:
ATGCCGAGGTCTCCCTTGTTCAGCCAATTTCCCCTCCACGAACGCCTGCTGAAGGCACTGGAAAGCCTGTCC
TTCAGCGAGCCGACGCCGGTCCAGGCCGCGGCCATTCCCAAGGCGCTGGAGGGGCACGACCTGCGGGTCACG
GCGCAGACCGGCAGCGGCAAGACCGCGGCCTTCCTGCTGCCGCTGCTGCACCGCCTGCTGGCCGAGGACAAG
CCGCGCTCCCTGGCGCGCGCGCTGATCCTCCTGCCGACCCGCGAGCTGGCCCAGCAGACCCTCAAGGAAGTC
GAGCGCTTCGCCCAGTTCACCTTCATCAAGGCCTGCCTGATCACTGGCGGCGAGGACTTCAAGGTGCAGGGC
GCGCGCCTGCGCAAGAACCCGGAGATCATCATCGGCACCCCCGGCCGCCTGCTCGAGCAGCGCAACGCCGGC
AACCTGCCGTTGCAGGACATCGAGGTGCTGGTGCTGGACGAGGCCGACCGCATGCTCGACATGGGCTTCGCC
GACGACGTGCTGGCCCTGGCCAATGCCTGCCCGGCCGAGCGCCAGACCCTGCTGTTCTCCGCCACCCACAGC
GGCGCCGGGTTGAACAAGGTGATAGCCGAGGTGCTGCGCGAGCCGCAAGTGCTGCGCCTGAACCAGGTCGGC
GAGCTGAACGAGAACGTCCGCCAGCAGGTCATCACCGCCGACGACGTGGCGCACAAGGAACAGTTGCTGCAA
TGGCTGCTGAGCAACGAGACCTACACCAAGGCCATCGTTTTCACCAATACCCGGGTCTCCGCCGATCGCCTG
ACCGGGCGGCTGATCGCCAACCAGCACAAGGTCTTCGTCCTGCATGGCGAGAAGGACCAGAAGGACCGCAAG
CTGGCCATCGAACGCCTGAAGCAGGGCGCGGTGAAGATCCTCGTCGCCACCGACGTCGCCGCACGCGGCCTG
GACGTCGAAGGCCTGGACCTGGTGATCAACTTCGACATGCCGCGCAGCGGCGACGAGTACGTGCACCGCATC
GGCCGCACCGGTCGCGCCGGCGCCGAGGGCCTGGCGATCTCGCTGATCTGCCATGGCGACTGGAACCTGATG
TCGAGCGTCGAACGCTACCTCAAGCAGAACTTCGAACGACGCAACATCAAGGAACTGAAGGCCGCCTACCAG
GGGCCGAAGAAGCTCAAGGCCTCGGGCAAGGCCGCCGGCAGCAAGAAGAAAAAGCAGGACAGGAAGGGCACC
GCCGCCAAGCCCGCGGCCAAGCGCAAGCCCGCCGCGCGGCCGAAGGCCGGGCCGTCGGCGGTGGTCAGCGCC
GACGGCATGGCGCCGCTCAAGCGCAAGAAGCCGACGGCGGAGTGA |
Translation:
MPRSPLFSQFPLHERLLKALESLSFSEPTPVQAAAIPKALEGHDLRVTAQTGSGKTAAFLLPLLHRLLAEDK
PRSLARALILLPTRELAQQTLKEVERFAQFTFIKACLITGGEDFKVQGARLRKNPEIIIGTPGRLLEQRNAG
NLPLQDIEVLVLDEADRMLDMGFADDVLALANACPAERQTLLFSATHSGAGLNKVIAEVLREPQVLRLNQVG
ELNENVRQQVITADDVAHKEQLLQWLLSNETYTKAIVFTNTRVSADRLTGRLIANQHKVFVLHGEKDQKDRK
LAIERLKQGAVKILVATDVAARGLDVEGLDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHGDWNLM
SSVERYLKQNFERRNIKELKAAYQGPKKLKASGKAAGSKKKKQDRKGTAAKPAAKRKPAARPKAGPSAVVSA
DGMAPLKRKKPTAE* |
AnnotationID:1214 | GeneID:1205 |
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Modification Date/Time: |
2005-04-19 09:09:02 |
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GeneProduct: | putative ATP-dependent RNA helicase |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (11) DNA replication, recombination, modification and repair |
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Alternate Gene Product Name: | putative ATP-dependent RNA helicase, DEAD box family |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | |
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Homology: | >gb|AAO55107.1| (AE016861) ATP-dependent RNA helicase SrmB [Pseudomonas syringae
pv. tomato str. DC3000]
Length = 453
Score = 613 bits (1580), Expect = e-175
Identities = 317/446 (71%), Positives = 365/446 (81%), Gaps = 7/446 (1%)
>gb|AAN70106.1|AE016650_5 (AE016791) ATP-dependent RNA helicase, DEAD box family [Pseudomonas
putida KT2440]
Length = 440
Score = 610 bits (1573), Expect = e-174
Identities = 311/441 (70%), Positives = 360/441 (81%), Gaps = 1/441 (0%)
>gb|AAN54021.1|AE015540_1 (AE015540) ATP-dependent RNA helicase SrmB [Shewanella oneidensis
MR-1]
Length = 420
Score = 293 bits (751), Expect = 1e-78
Identities = 172/419 (41%), Positives = 242/419 (57%), Gaps = 10/419 (2%) |
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Structural Features: | cd00268, DEADc, DEAD-box helicases.
CD-Length = 203 residues, 98.0% aligned
Score = 232 bits (594), Expect = 6e-62
Identities = 90/201 (44%), Positives = 120/201 (59%), Gaps = 2/201 (0%)
smart00487, DEXDc, DEAD-like helicases superfamily.
CD-Length = 202 residues, 83.7% aligned
Score = 142 bits (358), Expect = 9e-35
Identities = 71/173 (41%), Positives = 98/173 (56%), Gaps = 6/173 (3%)
COG0513, SrmB, Superfamily II DNA and RNA helicases
[DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
CD-Length = 513 residues, 88.3% aligned
Score = 370 bits (951), Expect = 2e-103
Identities = 161/455 (35%), Positives = 242/455 (53%), Gaps = 12/455 (2%) |
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