ViewGene
Locus Name:
GeneID:
Location:

GeneID:1201
TrivialName: PA14_30830
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30830
PAO1 Ortholog Locus:PA2572
Sequence Length:1344
Protein Length:447
Start: 2676055
Stop: 2674712
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05960.1|AE004685_6 (AE004685) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
Identities = 442/447 (98%), Positives = 445/447 (99%)
Sequence:
ATGAACGATAGCGCACCTCCTTCCAACGAGACGGAGATCCGCTTCAGCGTACTGCTGGTCGACGACGAGCCG
CTGATCCTCAGCAGCCTGCGCCGGCTGCTACGCAACCAGCCCTACGACCTGTTGCTGGCGGAAAGCGGCGAA
CAGGCCCTGCAACTGCTGGAAAGCCGGCCCGTGGACCTGGTGGTGTCCGACGCCCGCATGCCGAACATGGAC
GGTGCCGCCCTGCTCGCGGAAATCCATCGCCGCTTCCCGGAAACCATTCGCATCCTGCTCACCGGCCATGCC
GACCTGCCGACCATCGCCAAGGCCATCAACGAAGGGCGCATCCACCATTACCTGAGCAAGCCGTGGAACGAC
GACGAGTTGCTGCTGACCCTGCGCCAGTCGCTCGAATACCTGTATTCCGAGCGCGAGCGGCGGCGCCTGGAG
CGACTTACCCAGGAGCAGAACGACCGCCTCCAGCAACTCAACGCCACGCTGGAAAAGCGCGTTCAGGCGCGC
ACCGCCGAACTGCAGCAGACCGCCGACATGCTCGACCTCGCCTATGAGGAGCTAAAGCGTAGCTACGTGGTC
GGCACCGAGGTCTTCTCGCTGCTGGTCAACCAGCGCCTGCCCAAGGACAAGCAGACCAACCAGCAGATCATC
GAACTGGTCCGCGCCTGCTGTGCCAGCGGTCTCGTCGACGAATCGGATGGTCGCGACCTGGCGATGGCCGCG
GCGCTCTACAACATCGGCAAGCTGAGCTGGAACGACACCCTGCTCCGCTCGCCCTCGGACCTGCTCTATCAC
CACGACCGCGATCGTTTCCGCGGCTACCCGGAACTCAGCGAGTCGCTGCTGATGTCGCTGGAGCCGATGCAG
GACGCCGCCCGCCTGATTCGCCATCACCAGGAGCACTGGGACGGCAGCGGCTATCCGGACCACCTCAAGGGC
GAGTCCATCCCCCTGGGCTCGCGCCTCTTGAAGCTGGCGGTGGATTTCGTCGAGTTGCAGCGTGGGCTGATC
CTCGAACGGCGCATGAATCGCGACGAAGCGCTGATCTACATCCGCAAGTACGCCGGCCGGCTGTACGACCCC
GAGCTGATCGAACCGTTCATCCAGGTCTGCGCGACGACCCTTGCCGACGTCACCCTGGCCGATCCGCAAGTC
CGTGCCCATGGCACCCGCGACCTGGTTCCGGGCATGGTGCTCGCGCGCAACCTCACCGCCAACAACGGCATG
CTGCTGCTCAACGCGGGCAAGGTCCTGAACCTGGCGCTGATCGAGAAGCTGATCGCCTTCGAAGCGATCGAA
GGCGCACGCTACACGCTGTTCGTGCGCCTCCCGGAGTCGACGACCTAG
Translation:
MNDSAPPSNETEIRFSVLLVDDEPLILSSLRRLLRNQPYDLLLAESGEQALQLLESRPVDLVVSDARMPNMD
GAALLAEIHRRFPETIRILLTGHADLPTIAKAINEGRIHHYLSKPWNDDELLLTLRQSLEYLYSERERRRLE
RLTQEQNDRLQQLNATLEKRVQARTAELQQTADMLDLAYEELKRSYVVGTEVFSLLVNQRLPKDKQTNQQII
ELVRACCASGLVDESDGRDLAMAAALYNIGKLSWNDTLLRSPSDLLYHHDRDRFRGYPELSESLLMSLEPMQ
DAARLIRHHQEHWDGSGYPDHLKGESIPLGSRLLKLAVDFVELQRGLILERRMNRDEALIYIRKYAGRLYDP
ELIEPFIQVCATTLADVTLADPQVRAHGTRDLVPGMVLARNLTANNGMLLLNAGKVLNLALIEKLIAFEAIE
GARYTLFVRLPESTT*
AnnotationID:1210GeneID:1201
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 07:07:29
Gene Name:
Confidence Code:3
GeneProduct:putative two-component response regulator
Cell Localization:()
Synonyms:PA2572
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3437
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68550.1|AE016487_4 (AE016785) response regulator [Pseudomonas putida KT2440]
          Length = 456

 Score =  608 bits (1569), Expect = e-173
 Identities = 307/439 (69%), Positives = 364/439 (82%)








 
Structural Features:
COG3437, COG3437, Response regulator containing a CheY-like receiver domain 
and an HD-GYP domain 
[Transcription / Signal transduction mechanisms]
CD-Length = 360 residues,  97.2% aligned
Score =  327 bits (840), Expect = 1e-90
Identities = 142/376 (37%), Positives = 200/376 (53%), Gaps = 30/376 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2405




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19548




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33140




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1201_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1201
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2178
                           PA2572_tr
                           translation of PA2572
                           447
                           98.88
                           99.55
                           0
                           2236.0
     

     
     
72567
                           gb|AAG05960.1|AE004685_6
                           (AE004685) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
                           447
                           98.88
                           99.55
                           0
                           2236.0
     

     
     
72568
                           gb|AAN68550.1|AE016487_4
                           (AE016785) response regulator [Pseudomonas putida KT2440]
                           458
                           67.03
                           79.47
                           13
                           1563.0
     

     
     
72569
                           gb|AAK82997.1|AF285783_2
                           (AF285783) histidine kinase HsfB [Myxococcus xanthus]
                           614
                           20.03
                           31.10
                           254
                           323.0
     

     
     
72571
                           gb|AAG06269.1|AE004714_6
                           (AE004714) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
                           495
                           20.00
                           29.49
                           240
                           261.0
     

     






      

          
GC ORFID: 44203How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2572Glimmer Score: 

          
Start: 2277871Stop: 2279214

          
Length: 1344


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2572 translation of PA2572Homolog Bit Score 865.0

          
Other Homologs:  t_PA2572 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGATAGCGCACCTCCTTCCAACGAGACGGAGATCCGCTTCAGCGTACTGCTGGTCGACGACGAGCCG 
CTGATCCTCAGCAGCCTGCGCCGGCTGCTACGCAACCAGCCCTACGACCTGTTGCTGGCGGAAAGCGGCGAA 
CAGGCCCTGCAACTGCTGGAAAGCCGGCCCGTGGACCTGGTGGTGTCCGACGCCCGCATGCCGAACATGGAC 
GGTGCCGCCCTGCTCGCGGAAATCCATCGCCGCTTCCCGGAAACCATTCGCATCCTGCTCACCGGCCATGCC 
GACCTGCCGACCATCGCCAAGGCCATCAACGAAGGGCGCATCCACCATTACCTGAGCAAGCCGTGGAACGAC 
GACGAGTTGCTGCTGACCCTGCGCCAGTCGCTCGAATACCTGTATTCCGAGCGCGAGCGGCGGCGCCTGGAG 
CGACTTACCCAGGAGCAGAACGACCGCCTCCAGCAACTCAACGCCACGCTGGAAAAGCGCGTTCAGGCGCGC 
ACCGCCGAACTGCAGCAGACCGCCGACATGCTCGACCTCGCCTATGAGGAGCTAAAGCGTAGCTACGTGGTC 
GGCACCGAGGTCTTCTCGCTGCTGGTCAACCAGCGCCTGCCCAAGGACAAGCAGACCAACCAGCAGATCATC 
GAACTGGTCCGCGCCTGCTGTGCCAGCGGTCTCGTCGACGAATCGGATGGTCGCGACCTGGCGATGGCCGCG 
GCGCTCTACAACATCGGCAAGCTGAGCTGGAACGACACCCTGCTCCGCTCGCCCTCGGACCTGCTCTATCAC 
CACGACCGCGATCGTTTCCGCGGCTACCCGGAACTCAGCGAGTCGCTGCTGATGTCGCTGGAGCCGATGCAG 
GACGCCGCCCGCCTGATTCGCCATCACCAGGAGCACTGGGACGGCAGCGGCTATCCGGACCACCTCAAGGGC 
GAGTCCATCCCCCTGGGCTCGCGCCTCTTGAAGCTGGCGGTGGATTTCGTCGAGTTGCAGCGTGGGCTGATC 
CTCGAACGGCGCATGAATCGCGACGAAGCGCTGATCTACATCCGCAAGTACGCCGGCCGGCTGTACGACCCC 
GAGCTGATCGAACCGTTCATCCAGGTCTGCGCGACGACCCTTGCCGACGTCACCCTGGCCGATCCGCAAGTC 
CGTGCCCATGGCACCCGCGACCTGGTTCCGGGCATGGTGCTCGCGCGCAACCTCACCGCCAACAACGGCATG 
CTGCTGCTCAACGCGGGCAAGGTCCTGAACCTGGCGCTGATCGAGAAGCTGATCGCCTTCGAAGCGATCGAA 
GGCGCACGCTACACGCTGTTCGTGCGCCTCCCGGAGTCGACGACCTAG