ViewGene
Locus Name:
GeneID:
Location:

GeneID:1200
TrivialName: PA14_36080
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36080
PAO1 Ortholog Locus:PA2214
Sequence Length:1323
Protein Length:440
Start: 3215177
Stop: 3213855
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05602.1|AE004648_1 (AE004648) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 439/440 (99%), Positives = 439/440 (99%)
Sequence:
ATGAGCGCCATGAACGACCACGCCAGGCTGCTGTCCTCGGCGATCGCCACCAGCCGCCTGCGGCTCCTGCCT
TTCCTGGTCCTGATGTATGTACTGGCTTTCATCGACCGGGCCAACGTCGGTTACGCGCGGGCCTTCCTGCAA
GCCGACACCGGCCTTGGCGATGCCGCCTTCGCGTTTGGCGCGAGCATCTTCTTCATCGGCTACGCCTGCTTC
GAGGTGCCCAGCAACCTGATGCTGCACCGCCTCGGCGCCAGGGTCTGGCTGTGCAGGATCATGGTCACCTGG
GGCCTGGTCTCGGCGGCGATGATGTTCGCCGACGACGCCATGACCTTCTATGTCCTGCGTTTCCTGCTGGGC
GTCGCCGAGGCGGGCTTCTTCCCCGGCATCATCCTCTACCTCACCTACTGGTTCCCGCAGCGCAGCCGTGCC
CAGGCGCTCGGCCTGTTCTATTTCGGCCTGCCGCTGGCGCTGGTGCTGGGCGGTCCGCTGTCCGGCTGGCTG
CTGGAGTTCCACGGCATCTTCGGCCTGGCCAACTGGCAGTGGCTGTTCGTCACCGAGGGCCTGCTGGCCTCG
CTGGTCGGCATTGCCGCCTACTTCTACCTGGTCGACCGCCCGCGCGATGCCGGCTGGCTGAGCGACGAGCAG
AAGCGGGCGCTGGAAGGCGAGCTGGCCGAAGAAGACACCCGCAAACAGGCACGCGGCCCGCACGGCTTCCTC
AGCGCTCTGCGCAGCGGCCAGGTGCTGAAGTTCTGCCTGGTCTACTTCACCATCCAGATGAGCGTGTACGGC
GTGGTGTTCTACCTGCCGACCCGCATCGCCAGCTTCCTCGACGGCCAGGTCGGCCTGAACGTCGGCCTGATC
ACCGCGATTCCCTGGGCTTGCGCCCTGGTGGTAACGCGCCTGGTGACCCGCCAGGCCGACCGCAGCGGCCAG
CATCGCCAGCTCGCGGTGGCCATGCTGGGCATGGCCGCAGCCGGTATCGCCGCCTCGGCGCTGGCCGGCAAC
CTGGGCCTGGCGGTGATCGCCTTCTGCTTCGCCGCGTCCGGCTTCGTCTCGGTGCAGCCGCTGTTCTGGACC
CTTCCCACCGGCTACCTGAGCGGTGCGGCCGCGGCCAGCGGCATCGCCCTGATCAACTCCCTGGGCAACCTC
GGCGGCTTCGTCGCGCCGAACCTCAAGACCCTCATGGAAAGCCAGTTCGCCGACCCGCGCGCCGGCATGTTC
GCCCTGGCCGCCGTCGGCCTGCTCGGCGCCTGCCTGCTGGCCCGGCTGAAGACCTCCGGATCGTCGTCCGTC
CCGCTGCGAGCGCGGCAGGCCGGCTGA
Translation:
MSAMNDHARLLSSAIATSRLRLLPFLVLMYVLAFIDRANVGYARAFLQADTGLGDAAFAFGASIFFIGYACF
EVPSNLMLHRLGARVWLCRIMVTWGLVSAAMMFADDAMTFYVLRFLLGVAEAGFFPGIILYLTYWFPQRSRA
QALGLFYFGLPLALVLGGPLSGWLLEFHGIFGLANWQWLFVTEGLLASLVGIAAYFYLVDRPRDAGWLSDEQ
KRALEGELAEEDTRKQARGPHGFLSALRSGQVLKFCLVYFTIQMSVYGVVFYLPTRIASFLDGQVGLNVGLI
TAIPWACALVVTRLVTRQADRSGQHRQLAVAMLGMAAAGIAASALAGNLGLAVIAFCFAASGFVSVQPLFWT
LPTGYLSGAAAASGIALINSLGNLGGFVAPNLKTLMESQFADPRAGMFALAAVGLLGACLLARLKTSGSSSV
PLRARQAG*
AnnotationID:1209GeneID:1200
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 20:08:45
Gene Name:
Confidence Code:3
GeneProduct:putative MFS transporter
Cell Localization:()
Synonyms:yfaV
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative integral membrane protein
Functional Category Confidence Code:5
COGs:COG2271,COG2814
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL21191.1| (AE008802) putative MFS family transport protein [Salmonella
           typhimurium LT2]
          Length = 429

 Score =  397 bits (1019), Expect = e-110
 Identities = 196/418 (46%), Positives = 275/418 (65%), Gaps = 4/418 (0%)

>gb|AAG57377.1|AE005457_3 (AE005457) putative transport protein [Escherichia coli O157:H7
           EDL933]
          Length = 442

 Score =  396 bits (1017), Expect = e-109
 Identities = 196/418 (46%), Positives = 278/418 (66%), Gaps = 4/418 (0%)

>emb|CAB75122.1| (AL139075) transmembrane transport protein [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
          Length = 410

 Score =  369 bits (946), Expect = e-101
 Identities = 187/412 (45%), Positives = 261/412 (63%), Gaps = 6/412 (1%)








 
Structural Features:
COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism]
CD-Length = 448 residues,  90.4% aligned
Score = 86.0 bits (213), Expect = 7e-18
Identities = 80/410 (19%), Positives = 146/410 (35%), Gaps = 11/410 (2%)

COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]
CD-Length = 394 residues,  89.8% aligned
Score = 59.4 bits (144), Expect = 8e-10
Identities = 83/387 (21%), Positives = 128/387 (33%), Gaps = 36/387 (9%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2403




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19545




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32542




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1200_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1200
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2176
                           PA2214_tr
                           translation of PA2214
                           440
                           99.77
                           99.77
                           0
                           2236.0
     

     
     
72531
                           gb|AAG05602.1|AE004648_1
                           (AE004648) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           440
                           99.77
                           99.77
                           0
                           2236.0
     

     
     
72534
                           emb|CAD07523.1|
                           (AL627274) putative transport protein [Salmonella enterica subsp. enterica serovar Typhi]
                           444
                           45.49
                           63.28
                           19
                           1018.0
     

     
     
72533
                           gb|AAO68279.1|
                           (AE016836) putative transport protein [Salmonella enterica subsp. enterica serovar Typhi Ty2]
                           444
                           45.49
                           63.28
                           19
                           1018.0
     

     
     
72532
                           gb|AAL21191.1|
                           (AE008802) putative MFS family transport protein [Salmonella typhimurium LT2]
                           444
                           45.49
                           63.28
                           19
                           1018.0
     

     






      

          
GC ORFID: 44202How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2214Glimmer Score: 

          
Start: 1738739Stop: 1740061

          
Length: 1323


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2214 translation of PA2214Homolog Bit Score 865.0

          
Other Homologs:  psyr_15may02_Scaffold11_revised_gene1921 (ORF: BLASTX 340.0), psyr_15may02_Scaffold1_revised_gene740 (ORF: BLASTX 317.0), t_PA4126 (ORF: BLASTX 303.0), psyr_15may02_Scaffold16_revised_gene2580 (ORF: BLASTX 106.0), t_PA2214 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGCCATGAACGACCACGCCAGGCTGCTGTCCTCGGCGATCGCCACCAGCCGCCTGCGGCTCCTGCCT 
TTCCTGGTCCTGATGTATGTACTGGCTTTCATCGACCGGGCCAACGTCGGTTACGCGCGGGCCTTCCTGCAA 
GCCGACACCGGCCTTGGCGATGCCGCCTTCGCGTTTGGCGCGAGCATCTTCTTCATCGGCTACGCCTGCTTC 
GAGGTGCCCAGCAACCTGATGCTGCACCGCCTCGGCGCCAGGGTCTGGCTGTGCAGGATCATGGTCACCTGG 
GGCCTGGTCTCGGCGGCGATGATGTTCGCCGACGACGCCATGACCTTCTATGTCCTGCGTTTCCTGCTGGGC 
GTCGCCGAGGCGGGCTTCTTCCCCGGCATCATCCTCTACCTCACCTACTGGTTCCCGCAGCGCAGCCGTGCC 
CAGGCGCTCGGCCTGTTCTATTTCGGCCTGCCGCTGGCGCTGGTGCTGGGCGGTCCGCTGTCCGGCTGGCTG 
CTGGAGTTCCACGGCATCTTCGGCCTGGCCAACTGGCAGTGGCTGTTCGTCACCGAGGGCCTGCTGGCCTCG 
CTGGTCGGCATTGCCGCCTACTTCTACCTGGTCGACCGCCCGCGCGATGCCGGCTGGCTGAGCGACGAGCAG 
AAGCGGGCGCTGGAAGGCGAGCTGGCCGAAGAAGACACCCGCAAACAGGCACGCGGCCCGCACGGCTTCCTC 
AGCGCTCTGCGCAGCGGCCAGGTGCTGAAGTTCTGCCTGGTCTACTTCACCATCCAGATGAGCGTGTACGGC 
GTGGTGTTCTACCTGCCGACCCGCATCGCCAGCTTCCTCGACGGCCAGGTCGGCCTGAACGTCGGCCTGATC 
ACCGCGATTCCCTGGGCTTGCGCCCTGGTGGTAACGCGCCTGGTGACCCGCCAGGCCGACCGCAGCGGCCAG 
CATCGCCAGCTCGCGGTGGCCATGCTGGGCATGGCCGCAGCCGGTATCGCCGCCTCGGCGCTGGCCGGCAAC 
CTGGGCCTGGCGGTGATCGCCTTCTGCTTCGCCGCGTCCGGCTTCGTCTCGGTGCAGCCGCTGTTCTGGACC 
CTTCCCACCGGCTACCTGAGCGGTGCGGCCGCGGCCAGCGGCATCGCCCTGATCAACTCCCTGGGCAACCTC 
GGCGGCTTCGTCGCGCCGAACCTCAAGACCCTCATGGAAAGCCAGTTCGCCGACCCGCGCGCCGGCATGTTC 
GCCCTGGCCGCCGTCGGCCTGCTCGGCGCCTGCCTGCTGGCCCGGCTGAAGACCTCCGGATCGTCGTCCGTC 
CCGCTGCGAGCGCGGCAGGCCGGCTGA