ViewGene
Locus Name:
GeneID:
Location:

GeneID:120
TrivialName: PA14_24270
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24270
PAO1 Ortholog Locus:PA3083
Sequence Length:2658
Protein Length:885
Start: 2105253
Stop: 2107910
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06471.1|AE004732_5 (AE004732) aminopeptidase N [Pseudomonas aeruginosa PAO1]
Identities = 880/885 (99%), Positives = 882/885 (99%)
Sequence:
ATGCGCACCGAGCAACCGAAAGTCATCCACCTCAAGGACTATCAGGCGCCGGACTACCTGATCGACGAGACC
CACCTGAAGTTCGAACTGTTCGAAGACCACAGCCTGGTGCACGCCGAGCTGAAGCTGCGGCGCAACCCCGAG
CGCGGCGCCGGCCTGCCGCCGCTGTTGCTGCATGGTCAGCAACTGGAGCTGCTGGCGCTCGAACTGGACGGC
CAGGCGCTCGGCGCGGACGACTACCAACTGGACGACGAGCAGCTCGGGGTGCAACCGCGGCAGGCCGAGTTC
GTCCTCAGGAGCACGGTGCGTATCCATCCGGAGAGCAACACCGCGCTGGAAGGCCTGTACAAGTCCGGCAAG
ATGTTCTGCACCCAGTGCGAGGCCGAGGGTTTCCGCAAGATCACCTATTACCTCGACCGTCCCGACGTGATG
AGTCGCTTTACCACCACCGTCAGCGCCGAACAGCAGCGCTACCCGGTGCTGCTCTCCAACGGCAACCCGCTG
GCCAGCGGTTCCGAAGGCAACGGCCGGCACTGGGCGACCTGGGAAGACCCGTTCAAGAAGCCGGCCTACCTG
TTCGCCCTGGTCGCCGGCGACCTCTGGTGCGTCGAGGACAGCTTCCGCACCATGAGCCAGCGCGACGTGGCG
CTGCGCATCTACGTCGAGCCGGAGAACATCGACAAGGTCCAGCACGCCATGGACAGCCTGAAGAAGTCGATG
CGCTGGGACGAGGAGGTCTACGGCCGCGAATACGACCTGGACATCTTCATGATCGTCGCGGTCAACGACTTC
AACATGGGCGCGATGGAGAACAAGGGCCTCAACATCTTCAACTCCAGTTGCGTCCTGGCCCGTGCCGAAACC
GCCACCGACGCCGCCCACCAGCGGGTCGAGGGCGTGGTGGCGCATGAGTATTTCCACAACTGGTCGGGCAAC
CGGGTCACCTGCCGCGACTGGTTCCAGCTGTCGCTCAAGGAAGGCTTCACCGTATTCCGCGACTCGGAATTC
TCCGCCGACATGAACTCGCGCACGGTCAAGCGCGTCGAGGACGTCGCCTTCCTGCGCACCAACCAGTTCGCC
GAGGACGCCGGGCCGATGGCGCATCCGGTGCGCCCCGACTCGTTCATCGAGATTTCCAACTTCTACACCCTG
ACCGTCTACGAGAAGGGCTCGGAAGTGGTGCGGATGATCCACACCCTGCTCGGCGCCGAAGGCTTCCGCAAG
GGCTCGGACCTGTACTTCCAGCGCCACGACGGCCAGGCGGTGACCTGCGACGATTTCGTCAAGGCCATGGAA
GACGCCAATGGCGTCGACCTGACCCAGTTCAAGCGCTGGTACAGCCAGTCCGGCACTCCGCGCCTGGCGGTG
GAAGGCGAGTACGACGCCGCCGCCCGCCGCTACACCCTGACGGTGCGCCAGAGCTGCCCGCCGACTCCCGGC
CAGCCGAGCAAGGAACCCTTCGTCATCCCGCTGGAGCTGGGCCTGCTCGACGGCCAGGGCCACGAACTCCCG
CTGCGCCTGGAAGGCGAGGCCGCGGCCCAGGGCGGCAACCGCGTGCTGGCGGTGACCGAGGCCGAGCAGCGC
TTCGTCTTCGTCGAGGTGCCGGAGCAGCCGCTGCCATCGCTGCTGCGCGGCTTCTCCGCGCCGGTGAAACTG
AGCTTCCCCTACAGCCGCGACCAGTTGCTGTTCCTCATGCAGCACGACAGCGACGGCTTCAACCGCTGGGAG
GCCGGCCAACAGCTTTCGGTGCAGGTCCTGCAGGAGCTGATCGGCCAGCACCAGCGCGGCGCGCAACTGGTA
CTCGACCCGCGCCTGATCGAGGCCTACCGCACCCTCCTGGCGGACGAGGCGCTGGACCAGGCGATGGTCGCC
GAGATGCTCTCGCTGCCCAGCGAGGCCTATCTCACCGAGATCAGCGAAGTCGCCGATGTCGACGCGATCCAT
GCCGCCCGCGAATTCGCCCGCCAGCGTATCGGCGAAGCGCTGTTCGAGCCGCTGTGGCAGCGTTACCAGGCC
AACCGCAAGATTTCCCGCGACACCGCCTACCTCGCCGAAGCCTCGCACATCGCCCGGCGCAGCCTGCAGAAT
ATCGCGCTGTCCTACCTGTCGCTGTCGGGCCGGGAGGAAATCCTCGCCGCCTGCCTGGAGCAGTACGAAGGC
TGCGACAACATGACCGAGCGCCTGACCGCCCTGGCGGTGCTGGTCAATTCCGGCTTCGAGGCAGAGAAGGGC
AAGGCCCTGGCCATGTTCGCCGACTACTTCAAGGACGACCCGCTGGTGATGGACCAGTGGTTCAGCGTGCAG
GCCGGCTCGCCGCTGCCGGGCGGGCTGGAGCGGGTCCAGGCGCTGATGCAGCACCCGGCCTTCACCCTGAAG
AACCCGAACAAGGTGCGCGCGCTGATCGGCGCGTTCGCCAACCAGAACCTGGTCAACTTCCATCGTCCTGAC
GGCGCCGGCTATCGCTTCCTCGCCGACCAGGTGATCGTGCTCAACGCACTCAACCCGCAGATCGCCTCGCGC
CTGCTGATGCCGCTGACCCGCTGGCGCAAGTACGACGAGGCGCGGCAGGCGCTGATGCGCGGCGAGCTGGAA
CGTATCCTGGCCTCCGGCGAGCTGTCCAGCGACGTCTACGAAGTGGTGAGCAAGAGCCTGGCCTGA
Translation:
MRTEQPKVIHLKDYQAPDYLIDETHLKFELFEDHSLVHAELKLRRNPERGAGLPPLLLHGQQLELLALELDG
QALGADDYQLDDEQLGVQPRQAEFVLRSTVRIHPESNTALEGLYKSGKMFCTQCEAEGFRKITYYLDRPDVM
SRFTTTVSAEQQRYPVLLSNGNPLASGSEGNGRHWATWEDPFKKPAYLFALVAGDLWCVEDSFRTMSQRDVA
LRIYVEPENIDKVQHAMDSLKKSMRWDEEVYGREYDLDIFMIVAVNDFNMGAMENKGLNIFNSSCVLARAET
ATDAAHQRVEGVVAHEYFHNWSGNRVTCRDWFQLSLKEGFTVFRDSEFSADMNSRTVKRVEDVAFLRTNQFA
EDAGPMAHPVRPDSFIEISNFYTLTVYEKGSEVVRMIHTLLGAEGFRKGSDLYFQRHDGQAVTCDDFVKAME
DANGVDLTQFKRWYSQSGTPRLAVEGEYDAAARRYTLTVRQSCPPTPGQPSKEPFVIPLELGLLDGQGHELP
LRLEGEAAAQGGNRVLAVTEAEQRFVFVEVPEQPLPSLLRGFSAPVKLSFPYSRDQLLFLMQHDSDGFNRWE
AGQQLSVQVLQELIGQHQRGAQLVLDPRLIEAYRTLLADEALDQAMVAEMLSLPSEAYLTEISEVADVDAIH
AAREFARQRIGEALFEPLWQRYQANRKISRDTAYLAEASHIARRSLQNIALSYLSLSGREEILAACLEQYEG
CDNMTERLTALAVLVNSGFEAEKGKALAMFADYFKDDPLVMDQWFSVQAGSPLPGGLERVQALMQHPAFTLK
NPNKVRALIGAFANQNLVNFHRPDGAGYRFLADQVIVLNALNPQIASRLLMPLTRWRKYDEARQALMRGELE
RILASGELSSDVYEVVSKSLA*
AnnotationID:130GeneID:120
AnnotatorUID: danlee
Modification Date/Time: 2004-02-05 17:05:02
Gene Name:pepN
Confidence Code:2
GeneProduct:aminopeptidase N
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0308
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:243




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17024




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI - Conserved Domain Search (BLASTP).






    
Reference Type:Blast (text/plain)







    
Data:PA3083_CDS.cgi


    		




 
URL:

















    ReferenceID:17385




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:120
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
229
                           PA3083_tr
                           translation of PA3083
                           885
                           99.43
                           99.66
                           0
                           4562.0
     

     
     
16830
                           gb|AAG06471.1|AE004732_5
                           (AE004732) aminopeptidase N [Pseudomonas aeruginosa PAO1]
                           885
                           99.43
                           99.66
                           0
                           4562.0
     

     
     
16831
                           gb|AAN67631.1|AE016392_12
                           (AE016781) aminopeptidase N [Pseudomonas putida KT2440]
                           885
                           81.92
                           88.58
                           0
                           3763.0
     

     
     
16832
                           gb|AAO57257.1|
                           (AE016869) aminopeptidase N [Pseudomonas syringae pv. tomato str. DC3000]
                           888
                           78.71
                           88.40
                           3
                           3675.0
     

     
     
16833
                           gb|AAQ58851.1|
                           (AE016914) aminopeptidase N [Chromobacterium violaceum ATCC 12472]
                           886
                           54.62
                           69.75
                           15
                           2371.0
     

     






      

          
GC ORFID: 43122How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3083Glimmer Score: 

          
Start: 2848677Stop: 2846020

          
Length: 2658


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3083 translation of PA3083Homolog Bit Score 1761.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene724 (ORF: BLASTX 1426.0), t_PA3083 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCACCGAGCAACCGAAAGTCATCCACCTCAAGGACTATCAGGCGCCGGACTACCTGATCGACGAGACC 
CACCTGAAGTTCGAACTGTTCGAAGACCACAGCCTGGTGCACGCCGAGCTGAAGCTGCGGCGCAACCCCGAG 
CGCGGCGCCGGCCTGCCGCCGCTGTTGCTGCATGGTCAGCAACTGGAGCTGCTGGCGCTCGAACTGGACGGC 
CAGGCGCTCGGCGCGGACGACTACCAACTGGACGACGAGCAGCTCGGGGTGCAACCGCGGCAGGCCGAGTTC 
GTCCTCAGGAGCACGGTGCGTATCCATCCGGAGAGCAACACCGCGCTGGAAGGCCTGTACAAGTCCGGCAAG 
ATGTTCTGCACCCAGTGCGAGGCCGAGGGTTTCCGCAAGATCACCTATTACCTCGACCGTCCCGACGTGATG 
AGTCGCTTTACCACCACCGTCAGCGCCGAACAGCAGCGCTACCCGGTGCTGCTCTCCAACGGCAACCCGCTG 
GCCAGCGGTTCCGAAGGCAACGGCCGGCACTGGGCGACCTGGGAAGACCCGTTCAAGAAGCCGGCCTACCTG 
TTCGCCCTGGTCGCCGGCGACCTCTGGTGCGTCGAGGACAGCTTCCGCACCATGAGCCAGCGCGACGTGGCG 
CTGCGCATCTACGTCGAGCCGGAGAACATCGACAAGGTCCAGCACGCCATGGACAGCCTGAAGAAGTCGATG 
CGCTGGGACGAGGAGGTCTACGGCCGCGAATACGACCTGGACATCTTCATGATCGTCGCGGTCAACGACTTC 
AACATGGGCGCGATGGAGAACAAGGGCCTCAACATCTTCAACTCCAGTTGCGTCCTGGCCCGTGCCGAAACC 
GCCACCGACGCCGCCCACCAGCGGGTCGAGGGCGTGGTGGCGCATGAGTATTTCCACAACTGGTCGGGCAAC 
CGGGTCACCTGCCGCGACTGGTTCCAGCTGTCGCTCAAGGAAGGCTTCACCGTATTCCGCGACTCGGAATTC 
TCCGCCGACATGAACTCGCGCACGGTCAAGCGCGTCGAGGACGTCGCCTTCCTGCGCACCAACCAGTTCGCC 
GAGGACGCCGGGCCGATGGCGCATCCGGTGCGCCCCGACTCGTTCATCGAGATTTCCAACTTCTACACCCTG 
ACCGTCTACGAGAAGGGCTCGGAAGTGGTGCGGATGATCCACACCCTGCTCGGCGCCGAAGGCTTCCGCAAG 
GGCTCGGACCTGTACTTCCAGCGCCACGACGGCCAGGCGGTGACCTGCGACGATTTCGTCAAGGCCATGGAA 
GACGCCAATGGCGTCGACCTGACCCAGTTCAAGCGCTGGTACAGCCAGTCCGGCACTCCGCGCCTGGCGGTG 
GAAGGCGAGTACGACGCCGCCGCCCGCCGCTACACCCTGACGGTGCGCCAGAGCTGCCCGCCGACTCCCGGC 
CAGCCGAGCAAGGAACCCTTCGTCATCCCGCTGGAGCTGGGCCTGCTCGACGGCCAGGGCCACGAACTCCCG 
CTGCGCCTGGAAGGCGAGGCCGCGGCCCAGGGCGGCAACCGCGTGCTGGCGGTGACCGAGGCCGAGCAGCGC 
TTCGTCTTCGTCGAGGTGCCGGAGCAGCCGCTGCCATCGCTGCTGCGCGGCTTCTCCGCGCCGGTGAAACTG 
AGCTTCCCCTACAGCCGCGACCAGTTGCTGTTCCTCATGCAGCACGACAGCGACGGCTTCAACCGCTGGGAG 
GCCGGCCAACAGCTTTCGGTGCAGGTCCTGCAGGAGCTGATCGGCCAGCACCAGCGCGGCGCGCAACTGGTA 
CTCGACCCGCGCCTGATCGAGGCCTACCGCACCCTCCTGGCGGACGAGGCGCTGGACCAGGCGATGGTCGCC 
GAGATGCTCTCGCTGCCCAGCGAGGCCTATCTCACCGAGATCAGCGAAGTCGCCGATGTCGACGCGATCCAT 
GCCGCCCGCGAATTCGCCCGCCAGCGTATCGGCGAAGCGCTGTTCGAGCCGCTGTGGCAGCGTTACCAGGCC 
AACCGCAAGATTTCCCGCGACACCGCCTACCTCGCCGAAGCCTCGCACATCGCCCGGCGCAGCCTGCAGAAT 
ATCGCGCTGTCCTACCTGTCGCTGTCGGGCCGGGAGGAAATCCTCGCCGCCTGCCTGGAGCAGTACGAAGGC 
TGCGACAACATGACCGAGCGCCTGACCGCCCTGGCGGTGCTGGTCAATTCCGGCTTCGAGGCAGAGAAGGGC 
AAGGCCCTGGCCATGTTCGCCGACTACTTCAAGGACGACCCGCTGGTGATGGACCAGTGGTTCAGCGTGCAG 
GCCGGCTCGCCGCTGCCGGGCGGGCTGGAGCGGGTCCAGGCGCTGATGCAGCACCCGGCCTTCACCCTGAAG 
AACCCGAACAAGGTGCGCGCGCTGATCGGCGCGTTCGCCAACCAGAACCTGGTCAACTTCCATCGTCCTGAC 
GGCGCCGGCTATCGCTTCCTCGCCGACCAGGTGATCGTGCTCAACGCACTCAACCCGCAGATCGCCTCGCGC 
CTGCTGATGCCGCTGACCCGCTGGCGCAAGTACGACGAGGCGCGGCAGGCGCTGATGCGCGGCGAGCTGGAA 
CGTATCCTGGCCTCCGGCGAGCTGTCCAGCGACGTCTACGAAGTGGTGAGCAAGAGCCTGGCCTGA