ViewGene

Locus Name:
GeneID:
Location:

GeneID:1199
TrivialName: PA14_36120
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36120
PAO1 Ortholog Locus:PA2210
Sequence Length:1326
Protein Length:441
Start: 3220073
Stop: 3218748
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05598.1|AE004647_7 (AE004647) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 439/441 (99%), Positives = 440/441 (99%)
Sequence:
ATGGCTCAGGCACAGACCGCCGTGCTCCAGGCTGATCCTGCCCAGGACAAGGCCACTGCCGCAAAACCCAGC
AACGTCCGCTGGCGCATCTTCGCCATCGTCTTCGCCCTGACGGTGATCAACCTGGTCGACCGGGTCTCGCTG
TCCATCGCCATGCCCACCATCGCCGGTGAATTCCAGCTCACGCCGAGCATGCAGGGGCTGATCCTCAGCAGC
TTCTTCTGGGCCTACGCGCTGTTGCAGATTCCCGGCGGCTGGCTGATCGACCGCTACGGCCCGCGCCGGGTG
ATCGGCTGGTCCACCGGCCTCTGGGGAGCCTTCCAGACCCTCGCTGCCTTCGCCAGCGGCGGCCTGTCGCTG
ATGTTCGCCCGGGTCGCCCTGGGCGCGGCGGAAGCGCCGCTGTTCCCCTCCGGCGGCAAGCTCAACTCGCTG
TGGCTGGGCTCCAGCGAACGCAGCCGCGGCGCCGTGCTGATGGACTGCGGAGGGCCGCTGGGCGTCGCTCTC
GGCGGACTGGTCATCGCCTACCTGATCGCCGTGCTCGGCTCCTGGCGCAGCGCCTTCTTCATCGCCGGCATC
GCCACCCTGGCCATGGCCTGGCTGGCCTGGCACTACCTGCGCGACGACCCGGCCGAGCATCCCGGGGTCAAC
GCCGCCGAGCTGGACCGGATCAACGCCGACCGCTCCACCCCGCTCGCCGAAGCGGACTGCCAGGCCGGCGGA
AGACTGGGCATCGCCGGCCGCTCCCTGGTCGGTATCGTCCTCGGCCGCGCCAGTTGGGCCATGGTGTTCTTC
GGCCTGCTGACCTGGGGTCCTAGCTACCTGGCGCAGGCGCGCGGCTTCGATATCAAGGGTATCGGCGCCGCG
ACCTTCGTCATCTTCCTCTGCGGCGCCGTCGGTTCCCTGGTCGGCGGCTTCCTCTGCGACCTGCTGATCCGC
AAGGGCGTGCGCCGCGGCCTGGCGGCCAAGGGCCTGCTGACGGTCTCGGGCCTCGCGGCGCTGGTCGCCTTC
CTGCTGTTGCCGAGCCTGGAAGATGCCTATGCCGCCGTGACCCTGCTGGCGCTGACCGCCTTCTTCCTGATG
TGGGGCAGCCTGTACTGGAGCTTTCCGGCCTTGCTCGCCGCTCCGGCCCGGGTCGGCCTGGTCGGCGGGGTG
ATGAACATGGCCGGCAGCCTCGGCGGCATCGCCGTGCCGATCCTGGTCGGGCTGCTGCTGCAACACCTGGGC
GGATATGCCGCGGTGCTGGGCTTCTTCGCCCTCTGCTCGGCAGCCTTCATCGCCGGCACCCTGCTGATTTCC
CTGGACAAGACCGAGGCAAAGCATGGCTGA
Translation:
MAQAQTAVLQADPAQDKATAAKPSNVRWRIFAIVFALTVINLVDRVSLSIAMPTIAGEFQLTPSMQGLILSS
FFWAYALLQIPGGWLIDRYGPRRVIGWSTGLWGAFQTLAAFASGGLSLMFARVALGAAEAPLFPSGGKLNSL
WLGSSERSRGAVLMDCGGPLGVALGGLVIAYLIAVLGSWRSAFFIAGIATLAMAWLAWHYLRDDPAEHPGVN
AAELDRINADRSTPLAEADCQAGGRLGIAGRSLVGIVLGRASWAMVFFGLLTWGPSYLAQARGFDIKGIGAA
TFVIFLCGAVGSLVGGFLCDLLIRKGVRRGLAAKGLLTVSGLAALVAFLLLPSLEDAYAAVTLLALTAFFLM
WGSLYWSFPALLAAPARVGLVGGVMNMAGSLGGIAVPILVGLLLQHLGGYAAVLGFFALCSAAFIAGTLLIS
LDKTEAKHG*
AnnotationID:1208GeneID:1199
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 19:07:00
Gene Name:
Confidence Code:3
GeneProduct:putative MFS transporter
Cell Localization:()
Synonyms:PA2210
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative permease
Functional Category Confidence Code:5
COGs:COG2271,COG2814,COG2223
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAD46810.1|AF157643_4 (AF157643) putative transporter protein [Mycobacterium smegmatis]
          Length = 413

 Score =  312 bits (799), Expect = 3e-84
 Identities = 170/418 (40%), Positives = 241/418 (57%), Gaps = 21/418 (5%)

Structural Features:
COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism]
CD-Length = 448 residues,  92.4% aligned
Score =  109 bits (274), Expect = 6e-25
Identities = 96/421 (22%), Positives = 164/421 (38%), Gaps = 14/421 (3%)

COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]
CD-Length = 394 residues,  98.5% aligned
Score = 76.8 bits (189), Expect = 5e-15
Identities = 88/420 (20%), Positives = 146/420 (34%), Gaps = 33/420 (7%)

COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
CD-Length = 417 residues,  95.7% aligned
Score = 76.4 bits (188), Expect = 7e-15
Identities = 98/423 (23%), Positives = 147/423 (34%), Gaps = 32/423 (7%)
Genomic Context:
Comment:
ReferenceID:2401
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19543
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32546
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1199_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1199

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2175 PA2210_tr translation of PA2210 441 99.54 99.77 0 2236.0
72529 gb|AAG05598.1|AE004647_7 (AE004647) probable MFS transporter [Pseudomonas aeruginosa PAO1] 441 99.54 99.77 0 2236.0
72530 gb|AAD46810.1|AF157643_4 (AF157643) putative transporter protein [Mycobacterium smegmatis] 454 37.88 53.52 54 817.0
GC ORFID: 44201How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2210Glimmer Score:
Start: 1733843Stop: 1735168
Length: 1326
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2210 translation of PA2210Homolog Bit Score 865.0
Other Homologs: t_PA2210 (ORF: GLIMMER)
GC ORF Sequence
ATGGCTCAGGCACAGACCGCCGTGCTCCAGGCTGATCCTGCCCAGGACAAGGCCACTGCCGCAAAACCCAGC
AACGTCCGCTGGCGCATCTTCGCCATCGTCTTCGCCCTGACGGTGATCAACCTGGTCGACCGGGTCTCGCTG
TCCATCGCCATGCCCACCATCGCCGGTGAATTCCAGCTCACGCCGAGCATGCAGGGGCTGATCCTCAGCAGC
TTCTTCTGGGCCTACGCGCTGTTGCAGATTCCCGGCGGCTGGCTGATCGACCGCTACGGCCCGCGCCGGGTG
ATCGGCTGGTCCACCGGCCTCTGGGGAGCCTTCCAGACCCTCGCTGCCTTCGCCAGCGGCGGCCTGTCGCTG
ATGTTCGCCCGGGTCGCCCTGGGCGCGGCGGAAGCGCCGCTGTTCCCCTCCGGCGGCAAGCTCAACTCGCTG
TGGCTGGGCTCCAGCGAACGCAGCCGCGGCGCCGTGCTGATGGACTGCGGAGGGCCGCTGGGCGTCGCTCTC
GGCGGACTGGTCATCGCCTACCTGATCGCCGTGCTCGGCTCCTGGCGCAGCGCCTTCTTCATCGCCGGCATC
GCCACCCTGGCCATGGCCTGGCTGGCCTGGCACTACCTGCGCGACGACCCGGCCGAGCATCCCGGGGTCAAC
GCCGCCGAGCTGGACCGGATCAACGCCGACCGCTCCACCCCGCTCGCCGAAGCGGACTGCCAGGCCGGCGGA
AGACTGGGCATCGCCGGCCGCTCCCTGGTCGGTATCGTCCTCGGCCGCGCCAGTTGGGCCATGGTGTTCTTC
GGCCTGCTGACCTGGGGTCCTAGCTACCTGGCGCAGGCGCGCGGCTTCGATATCAAGGGTATCGGCGCCGCG
ACCTTCGTCATCTTCCTCTGCGGCGCCGTCGGTTCCCTGGTCGGCGGCTTCCTCTGCGACCTGCTGATCCGC
AAGGGCGTGCGCCGCGGCCTGGCGGCCAAGGGCCTGCTGACGGTCTCGGGCCTCGCGGCGCTGGTCGCCTTC
CTGCTGTTGCCGAGCCTGGAAGATGCCTATGCCGCCGTGACCCTGCTGGCGCTGACCGCCTTCTTCCTGATG
TGGGGCAGCCTGTACTGGAGCTTTCCGGCCTTGCTCGCCGCTCCGGCCCGGGTCGGCCTGGTCGGCGGGGTG
ATGAACATGGCCGGCAGCCTCGGCGGCATCGCCGTGCCGATCCTGGTCGGGCTGCTGCTGCAACACCTGGGC
GGATATGCCGCGGTGCTGGGCTTCTTCGCCCTCTGCTCGGCAGCCTTCATCGCCGGCACCCTGCTGATTTCC
CTGGACAAGACCGAGGCAAAGCATGGCTGA