ViewGene
Locus Name:
GeneID:
Location:

GeneID:1197
TrivialName: PA14_51650
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51650
PAO1 Ortholog Locus:
Sequence Length:1281
Protein Length:426
Start: 4589452
Stop: 4590732
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP82947.1| (AY273870) integrase [Pseudomonas aeruginosa]
Identities = 426/426 (100%), Positives = 426/426 (100%)
Sequence:
ATGACGCCGCAGCAGCTCACCGAGGAGTACATCTTCGCGCACGATCTCCGAGAAGCCAGCGCGAAGATCTAC
CGCGCCGCGACCAAGGCGCTGCTCAAGCACTTCGGCCCTACGGCAACCGTACAGGAGGTGGACCACAGGTCT
GTGCTGGGATGGCGGCGCAAGGTCCTGGAACAAGGCCTGTCGAAGCGGAGCTGGAACACGTATTCGAATCAT
CTGCGAACGATCTGGGGCTATGCCATCGAGCACGAGCTGGTGACACACTCCCAAGTCAACCCGTTCAGAAAG
ACCACCGTCATCCCCCCCAGGCGAGCAAGCAAAACCGTCGCAGCCGAAGCCATCCTGCGCGCCCGCAATTGG
CTCAACATGCAGGTCGGCGCCGAGCGCTGCACTGGCGATCGCGCACGCATCACTCCCGCCTGGTTCTGGCTT
TGCACGTTTGAGGTCTTCTACTTCACCGGCATCCGGTTGAATGCGCTGTTGTGCATCCGCAAGCGCGACATC
GACTGGGAAAATCAACTGATCCTCATCCGCGGCGAGACAGAGAAAACTCATAAAGAGTTCGTAGTGCCAATA
ACGGAGGGGCTTGTGCCTCACCTATCGCGGCTCCTGCAGGAGGCCGATAGAGCCGGATTCGCCGATGACGAC
CAGTTGTTCAACGTCAACCGGTTCTCACCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCC
ATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACC
GACTTGATGAAGGCACCCGAGCGGAACATCCACCTCACGAAGTGCCTGCTCAACCACTCGAATATCCAGACC
ACCATGAGCTACATCGAGGCCGACTACGACCACATGCGTGCCGTGCTGCATGCCAGAAGCCTGGCCCAAGGA
GCGCTGGAGAACGTCAGGAAGGTGGATTACAGCGGCTCCCCGCAAGCCTCTGCCAAACCGAAGCCATGCGGG
CAACCTCTCGCTCGAATGGGTGAAGCGCCGCCACAGGAGGCTAGGACAGAACCTGCAGAACCAAGGGAGCAC
ACACCAGGGACAGGCATTCAGGGAGATGCAACCGCGTGGGAAGAAGCGCTACCACAGCCACCTGACACCTTC
GAGCAAAGCGTGCTGTTCACTCTGATGGCTCAACACCTATCGAACCGTGCCGCCACGGCCTCCGCGGCTTCC
ACCGCAACAAGCGGATCTGGAGGATGGGGATCTACCGCCCGAAGCAGTCTCGCCTAG
Translation:
MTPQQLTEEYIFAHDLREASAKIYRAATKALLKHFGPTATVQEVDHRSVLGWRRKVLEQGLSKRSWNTYSNH
LRTIWGYAIEHELVTHSQVNPFRKTTVIPPRRASKTVAAEAILRARNWLNMQVGAERCTGDRARITPAWFWL
CTFEVFYFTGIRLNALLCIRKRDIDWENQLILIRGETEKTHKEFVVPITEGLVPHLSRLLQEADRAGFADDD
QLFNVNRFSPHYKSKVMNSDQVEAMYRKLTEKVGVRMTPHRFRHTLATDLMKAPERNIHLTKCLLNHSNIQT
TMSYIEADYDHMRAVLHARSLAQGALENVRKVDYSGSPQASAKPKPCGQPLARMGEAPPQEARTEPAEPREH
TPGTGIQGDATAWEEALPQPPDTFEQSVLFTLMAQHLSNRAATASAASTATSGSGGWGSTARSSLA*
AnnotationID:1206GeneID:1197
AnnotatorUID: danlee
Modification Date/Time: 2005-08-26 15:03:25
Gene Name:RS02
Confidence Code:3
GeneProduct:putative integrase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
cd01182, INT_REC_C, DNA breaking-rejoining enzymes, intergrase/recombinases, 
C-terminal catalytic domain. Score: 85.3, 1e-17
cd00798, INT_XerDC, XerD and XerC integrases, DNA breaking-rejoining enzymes, N- and 
C-terminal domains. Score: 83.7, 4e-17






   
Genomic Context:






   
Comment:


















    ReferenceID:2397




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19539




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32074




  
Author/Investigator(s):
        He J, Baldini RL, Deziel E, Saucier M, Zhang Q, Liberati NT, Lee D, Urbach J, Goodman HM, Rahme LG.





  
Title:
        The broad host range pathogen Pseudomonas aeruginosa strain PA14 carries two pathogenicity islands harboring plant and animal virulence genes.




  
PubMed:
        14983043


MedLine:
        




    
Source:
Proc Natl Acad Sci U S A. 2004 Feb 24;101(8):2530-5.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1197
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
72193
                           gb|AAP82947.1|
                           (AY273870) integrase [Pseudomonas aeruginosa]
                           426
                           99.99
                           99.99
                           0
                           2240.0
     

     
     
72194
                           gb|AAP94680.1|
                           (AY258138) putative integrase [Pseudomonas aeruginosa]
                           426
                           96.94
                           97.88
                           0
                           2171.0
     

     
     
72195
                           gb|AAP84129.1|
                           (AY273869) integrase [Pseudomonas aeruginosa]
                           427
                           95.55
                           97.42
                           1
                           2140.0
     

     
     
72196
                           gb|AAG02084.1|AF285416_2
                           (AF285416) XerC [Pseudomonas aeruginosa]
                           427
                           93.67
                           96.48
                           1
                           2101.0
     

     
     
72199
                           gb|AAG02087.1|AF285421_1
                           (AF285421) XerC [Pseudomonas aeruginosa]
                           427
                           48.71
                           50.11
                           199
                           1071.0
     

     






      

          
GC ORFID: 44199How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RS02Glimmer Score: 

          
Start: 364455Stop: 363175

          
Length: 1281


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_RS02 XerC 426 Homolog: Integrase / recombination-related / P. aeruginosa / SG17M (AAG02084) translation of RS02Homolog Bit Score 867.0

          
Other Homologs:  t_RL002 (ORF: BLASTX 828.0), t_RS02 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACGCCGCAGCAGCTCACCGAGGAGTACATCTTCGCGCACGATCTCCGAGAAGCCAGCGCGAAGATCTAC 
CGCGCCGCGACCAAGGCGCTGCTCAAGCACTTCGGCCCTACGGCAACCGTACAGGAGGTGGACCACAGGTCT 
GTGCTGGGATGGCGGCGCAAGGTCCTGGAACAAGGCCTGTCGAAGCGGAGCTGGAACACGTATTCGAATCAT 
CTGCGAACGATCTGGGGCTATGCCATCGAGCACGAGCTGGTGACACACTCCCAAGTCAACCCGTTCAGAAAG 
ACCACCGTCATCCCCCCCAGGCGAGCAAGCAAAACCGTCGCAGCCGAAGCCATCCTGCGCGCCCGCAATTGG 
CTCAACATGCAGGTCGGCGCCGAGCGCTGCACTGGCGATCGCGCACGCATCACTCCCGCCTGGTTCTGGCTT 
TGCACGTTTGAGGTCTTCTACTTCACCGGCATCCGGTTGAATGCGCTGTTGTGCATCCGCAAGCGCGACATC 
GACTGGGAAAATCAACTGATCCTCATCCGCGGCGAGACAGAGAAAACTCATAAAGAGTTCGTAGTGCCAATA 
ACGGAGGGGCTTGTGCCTCACCTATCGCGGCTCCTGCAGGAGGCCGATAGAGCCGGATTCGCCGATGACGAC 
CAGTTGTTCAACGTCAACCGGTTCTCACCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCC 
ATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACC 
GACTTGATGAAGGCACCCGAGCGGAACATCCACCTCACGAAGTGCCTGCTCAACCACTCGAATATCCAGACC 
ACCATGAGCTACATCGAGGCCGACTACGACCACATGCGTGCCGTGCTGCATGCCAGAAGCCTGGCCCAAGGA 
GCGCTGGAGAACGTCAGGAAGGTGGATTACAGCGGCTCCCCGCAAGCCTCTGCCAAACCGAAGCCATGCGGG 
CAACCTCTCGCTCGAATGGGTGAAGCGCCGCCACAGGAGGCTAGGACAGAACCTGCAGAACCAAGGGAGCAC 
ACACCAGGGACAGGCATTCAGGGAGATGCAACCGCGTGGGAAGAAGCGCTACCACAGCCACCTGACACCTTC 
GAGCAAAGCGTGCTGTTCACTCTGATGGCTCAACACCTATCGAACCGTGCCGCCACGGCCTCCGCGGCTTCC 
ACCGCAACAAGCGGATCTGGAGGATGGGGATCTACCGCCCGAAGCAGTCTCGCCTAG