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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG06928.1|AE004774_6 (AE004774) GDP-mannose 6-dehydrogenase AlgD [Pseudomonas aeruginosa PAO1]
Identities = 436/436 (100%), Positives = 436/436 (100%)
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Sequence:
ATGCGAATCAGCATCTTTGGTTTGGGCTATGTCGGTGCAGTATGTGCTGGCTGCCTGTCGGCACGCGGTCAT
GAAGTCATTGGTGTGGATGTCTCCAGCACCAAGATCGACCTGATCAACCAGGGCAAGTCGCCCATCGTCGAA
CCGGGCCTGGAAGCGTTGTTGCAGCAAGGCCGGCAGACCGGACGGCTGTCGGGCACCACCGATTTCAAGAAG
GCCGTGCTGGACTCCGACGTATCGTTCATCTGCGTCGGCACGCCGAGCAAGAAGAACGGCGACCTGGACCTG
GGCTACATCGAGACCGTCTGCCGCGAGATCGGCTTCGCCATCCGCGAGAAGTCCGAACGCCACACCGTGGTG
GTGCGCAGCACCGTACTGCCGGGCACCGTCAACAACGTGGTGATCCCGCTGATCGAGGACTGCTCGGGCAAG
AAGGCCGGGGTCGACTTCGGCGTCGGCACCAACCCCGAATTCCTCCGCGAGAGCACCGCGATCAAGGACTAC
GACTTCCCGCCGATGACCGTGATCGGCGAACTGGACAAGCAGACCGGCGACCTTCTCGAGGAAATCTACCGC
GAGCTGGACGCGCCGATCATCCGCAAGACCGTCGAGGTCGCCGAGATGATCAAGTACACCTGCAACGTCTGG
CACGCCGCCAAGGTCACCTTCGCCAACGAGATCGGCAACATCGCCAAGGCGGTCGGCGTCGACGGCCGCGAG
GTGATGGACGTGATCTGCCAGGACCACAAGCTCAACCTGTCGCGCTACTACATGCGTCCCGGCTTCGCCTTC
GGCGGCTCCTGCCTGCCCAAGGATGTACGCGCCCTCACCTATCGCGCCAGCCAGCTGGACGTCGAGCACCCG
ATGCTCGGTTCGTTGATGCGCAGCAACTCCAACCAGGTGCAGAAGGCCTTCGATCTCATCACCAGCCACGAC
ACCCGCAAGGTCGGCCTGCTCGGCCTGTCGTTCAAGGCCGGCACCGACGATTTGCGCGAAAGCCCGCTGGTG
GAGCTGGCCGAGATGCTCATCGGCAAGGGCTACGAGTTGCGCATCTTCGACCGCAACGTCGAATACGCGCGT
GTCCACGGGGCCAACAAGGAATACATCGAGTCGAAGATCCCGCACGTCTCCTCACTGCTGGTCTCCGACCTC
GACGAAGTGGTGGCGAGTTCCGATGTGCTGGTGCTGGGCAATGGCGACGAGCTGTTCGTCGACCTGGTGAAC
AAGACCCCGAGCGGCAAGAAGCTGGTCGACCTGGTGGGCTTCATGCCGCACACCACCACTGCCCAGGCCGAG
GGCATCTGCTGGTAG |
Translation:
MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKK
AVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGK
KAGVDFGVGTNPEFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAPIIRKTVEVAEMIKYTCNVW
HAAKVTFANEIGNIAKAVGVDGREVMDVICQDHKLNLSRYYMRPGFAFGGSCLPKDVRALTYRASQLDVEHP
MLGSLMRSNSNQVQKAFDLITSHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYAR
VHGANKEYIESKIPHVSSLLVSDLDEVVASSDVLVLGNGDELFVDLVNKTPSGKKLVDLVGFMPHTTTAQAE
GICW* |
AnnotationID:1203 | GeneID:1194 |
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Modification Date/Time: |
2006-03-11 16:04:25 |
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GeneProduct: | GDP-mannose 6-dehydrogenase AlgD |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (23) Secreted Factors (toxins, enzymes, alginate) |
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Alternate Gene Product Name: | |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | Adaptation, protection; Cell wall / LPS / capsule |
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Homology: | >gb|AAB58939.1| (AF001555) GDP mannose dehydrogenase [Pseudomonas syringae pv.
phaseolicola]
Length = 438
Score = 710 bits (1832), Expect = 0.0
Identities = 346/438 (78%), Positives = 390/438 (89%), Gaps = 2/438 (0%)
>gb|AAN66912.1|AE016319_8 (AE016778) GDP-mannose 6-dehydrogenase [Pseudomonas putida KT2440]
Length = 438
Score = 698 bits (1802), Expect = 0.0
Identities = 345/438 (78%), Positives = 387/438 (88%), Gaps = 2/438 (0%)
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Structural Features: | pfam03721, UDPG_MGDP_dh_N, UDP-glucose/GDP-mannose dehydrogenase family
CD-Length = 192 residues, 100.0% aligned
Score = 233 bits (595), Expect = 4e-62
Identities = 98/196 (50%), Positives = 124/196 (63%), Gaps = 4/196 (2%)
COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase
[Cell envelope biogenesis, outer membrane]
CD-Length = 414 residues, 100.0% aligned
Score = 446 bits (1150), Expect = 2e-126
Identities = 155/434 (35%), Positives = 238/434 (54%), Gaps = 28/434 (6%) |
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