ViewGene
Locus Name:
GeneID:
Location:

GeneID:1193
TrivialName: PA14_28180
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28180
PAO1 Ortholog Locus:PA2776
Sequence Length:1284
Protein Length:427
Start: 2440560
Stop: 2439277
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06164.1|AE004705_6 (AE004705) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 427/427 (100%), Positives = 427/427 (100%)
Sequence:
ATGCCGCACACCCCCTACCCCTCCTCCTATTACGCCGCGTCGGCCAATCCCGCGCCGCCCCGCCCGGAACTC
CAGGGCGAGGTCGAAACCGACGTCTGCGTGATCGGTGCCGGCTATACCGGCCTCTCCACCGCCCTGTTCCTG
CTGGAGAATGGTTTCAAGGTCACCGTACTGGAAGCCGCCAAGGTCGGCTTCGGCGCTTCCGGGCGCAACGGC
GGCCAGATCGTCAACAGCTACAGCCGCGACATCGACGTGATCGAGCGCACCGTCGGCAAGCGCGAAGCGCAG
TTGCTCGGCGAGATGGCCTTCGAAGGCGGGCGCATCATCCGCGAGCGCGTGGCCCGCTACGGTATCCAGTGC
GACCTGAAGGACGGCGGGGTGTTCGCCGCCTTCACCGAGAAGCAGATGGATCACCTGCGCGCACAGAAACAG
TTGTGGGAACGCTACGGCCACAACCAGTTGGAGATCATGGACGCCAAGCGCATCCGCGAGGTGGTGGCGACC
GACAACTATATAGGCGGCATGCTCGACATGAGCGGCGGCCACATCCATCCGCTGAACCTCGCCCTCGGCGAA
GCGGCGGCAGTGGAGTCACTTGGCGGCAGAATCTACGAGCAGAGCCCGGCGACCCGCATCGAGCGCGGCGCC
AGCCCGGTGGTGCATACCCCGCAAGGCAAAGTGAAGGCGAAGTTCATCGTGGTCGCCGGTAACGCCTACCTC
AACGGTCTGGTCCCGGAACTGGCGGCCAAGTCGATGCCCTGCGGCACCCAGGTGATCACCACCGAGCCGCTG
AACGAGGAACTGGCCCACAGCCTGCTGCCGCAGGACTACTGCGTGGAAGACTGCAATTACCTGCTCGACTAC
TATCGCCTCTCCGGCGACAAGCGCCTGATCTACGGTGGCGGCGTGATCTATGGCGCTCGCGATCCGGCGGAC
ATCGAGGCGATCATCCGGCCGAAGATGCTCAAGACCTTCCCGCAACTGAAGGACGTGAAGATCGACTTCGCC
TGGACCGGCAACTTCCTGCTGACCCTCTCGCGCCTGCCCCAGGTCGGCCGCATCGGCGACAACATCTACTAT
TCCCAGGGTTGCAGCGGCCACGGCGTGACCTACACCCACGTCGCCGGCAAGGTCCTGGCCGAAGCCCTGCGC
GGCCAGGCCGAGCGCTTCGACGCTTTCGCCGGCCTGCCGCACTACCCCTTCCCCGGCGGCAAGCTGTTCCGC
GTACCGTTCACCGCCATCGGCGCCTGGTACTACAGCCTGCGCGACAAGCTCGGGGTCTAG
Translation:
MPHTPYPSSYYAASANPAPPRPELQGEVETDVCVIGAGYTGLSTALFLLENGFKVTVLEAAKVGFGASGRNG
GQIVNSYSRDIDVIERTVGKREAQLLGEMAFEGGRIIRERVARYGIQCDLKDGGVFAAFTEKQMDHLRAQKQ
LWERYGHNQLEIMDAKRIREVVATDNYIGGMLDMSGGHIHPLNLALGEAAAVESLGGRIYEQSPATRIERGA
SPVVHTPQGKVKAKFIVVAGNAYLNGLVPELAAKSMPCGTQVITTEPLNEELAHSLLPQDYCVEDCNYLLDY
YRLSGDKRLIYGGGVIYGARDPADIEAIIRPKMLKTFPQLKDVKIDFAWTGNFLLTLSRLPQVGRIGDNIYY
SQGCSGHGVTYTHVAGKVLAEALRGQAERFDAFAGLPHYPFPGGKLFRVPFTAIGAWYYSLRDKLGV*
AnnotationID:1202GeneID:1193
AnnotatorUID: diggins
Modification Date/Time: 2005-04-06 02:02:25
Gene Name:
Confidence Code:3
GeneProduct:putative oxidoreductase
Cell Localization:()
Synonyms:ordL
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0665
Secondary Functional Category(ies):amino acid transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAC74383.1| (AE000228) probable oxidoreductase [Escherichia coli K12]
          Length = 426

 Score =  580 bits (1495), Expect = e-165
 Identities = 280/425 (65%), Positives = 336/425 (79%), Gaps = 1/425 (0%)

>gb|AAP16799.1| (AE016982) probable oxidoreductase [Shigella flexneri 2a str.
           2457T]
          Length = 426

 Score =  572 bits (1473), Expect = e-162
 Identities = 276/425 (64%), Positives = 332/425 (78%), Gaps = 1/425 (0%)

>dbj|BAC60038.1| (AP005079) putative oxidoreductase [Vibrio parahaemolyticus]
          Length = 425

 Score =  553 bits (1425), Expect = e-157
 Identities = 262/422 (62%), Positives = 325/422 (77%)






 
Structural Features:
COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) 
[Amino acid transport and metabolism]
CD-Length = 387 residues, 100.0% aligned
Score =  222 bits (566), Expect = 6e-59
Identities = 121/396 (30%), Positives = 164/396 (41%), Gaps = 23/396 (5%)








   
Genomic Context:






   
Comment:


















    ReferenceID:2389




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19531




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36270




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1193_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1193
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2148
                           PA2776_tr
                           translation of PA2776
                           427
                           99.99
                           99.99
                           0
                           2240.0
     

     
     
71822
                           gb|AAG06164.1|AE004705_6
                           (AE004705) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           427
                           99.99
                           99.99
                           0
                           2240.0
     

     
     
71823
                           gb|AAN68060.1|AE016438_6
                           (AE016783) conserved hypothetical protein [Pseudomonas putida KT2440]
                           427
                           87.58
                           94.61
                           0
                           2009.0
     

     
     
71824
                           gb|AAO56196.1|
                           (AE016865) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           427
                           85.01
                           92.50
                           0
                           1946.0
     

     
     
71825
                           gb|AAN54342.1|AE015571_5
                           (AE015571) conserved hypothetical protein [Shewanella oneidensis MR-1]
                           431
                           76.33
                           85.15
                           7
                           1749.0
     

     






      

          
GC ORFID: 44195How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2776Glimmer Score: 

          
Start: 2513366Stop: 2514649

          
Length: 1284


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2776 translation of PA2776Homolog Bit Score 867.0

          
Other Homologs:  t_PA5309 (ORF: BLASTX 388.0), psyr_15may02_Scaffold2_revised_gene3925 (ORF: BLASTX 380.0), t_PA1565 (ORF: BLASTX 325.0), psyr_15may02_Scaffold1_revised_gene140 (ORF: BLASTX 300.0), t_PA2776 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGCACACCCCCTACCCCTCCTCCTATTACGCCGCGTCGGCCAATCCCGCGCCGCCCCGCCCGGAACTC 
CAGGGCGAGGTCGAAACCGACGTCTGCGTGATCGGTGCCGGCTATACCGGCCTCTCCACCGCCCTGTTCCTG 
CTGGAGAATGGTTTCAAGGTCACCGTACTGGAAGCCGCCAAGGTCGGCTTCGGCGCTTCCGGGCGCAACGGC 
GGCCAGATCGTCAACAGCTACAGCCGCGACATCGACGTGATCGAGCGCACCGTCGGCAAGCGCGAAGCGCAG 
TTGCTCGGCGAGATGGCCTTCGAAGGCGGGCGCATCATCCGCGAGCGCGTGGCCCGCTACGGTATCCAGTGC 
GACCTGAAGGACGGCGGGGTGTTCGCCGCCTTCACCGAGAAGCAGATGGATCACCTGCGCGCACAGAAACAG 
TTGTGGGAACGCTACGGCCACAACCAGTTGGAGATCATGGACGCCAAGCGCATCCGCGAGGTGGTGGCGACC 
GACAACTATATAGGCGGCATGCTCGACATGAGCGGCGGCCACATCCATCCGCTGAACCTCGCCCTCGGCGAA 
GCGGCGGCAGTGGAGTCACTTGGCGGCAGAATCTACGAGCAGAGCCCGGCGACCCGCATCGAGCGCGGCGCC 
AGCCCGGTGGTGCATACCCCGCAAGGCAAAGTGAAGGCGAAGTTCATCGTGGTCGCCGGTAACGCCTACCTC 
AACGGTCTGGTCCCGGAACTGGCGGCCAAGTCGATGCCCTGCGGCACCCAGGTGATCACCACCGAGCCGCTG 
AACGAGGAACTGGCCCACAGCCTGCTGCCGCAGGACTACTGCGTGGAAGACTGCAATTACCTGCTCGACTAC 
TATCGCCTCTCCGGCGACAAGCGCCTGATCTACGGTGGCGGCGTGATCTATGGCGCTCGCGATCCGGCGGAC 
ATCGAGGCGATCATCCGGCCGAAGATGCTCAAGACCTTCCCGCAACTGAAGGACGTGAAGATCGACTTCGCC 
TGGACCGGCAACTTCCTGCTGACCCTCTCGCGCCTGCCCCAGGTCGGCCGCATCGGCGACAACATCTACTAT 
TCCCAGGGTTGCAGCGGCCACGGCGTGACCTACACCCACGTCGCCGGCAAGGTCCTGGCCGAAGCCCTGCGC 
GGCCAGGCCGAGCGCTTCGACGCTTTCGCCGGCCTGCCGCACTACCCCTTCCCCGGCGGCAAGCTGTTCCGC 
GTACCGTTCACCGCCATCGGCGCCTGGTACTACAGCCTGCGCGACAAGCTCGGGGTCTAG