ViewGene
Locus Name:
GeneID:
Location:

GeneID:1192
TrivialName: PA14_51040
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51040
PAO1 Ortholog Locus:PA1028
Sequence Length:1287
Protein Length:428
Start: 4535157
Stop: 4533871
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04417.1|AE004535_4 (AE004535) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 426/428 (99%), Positives = 428/428 (100%)
Sequence:
ATGGGCGGTTTGCAGCAACGGTGTCTGTGGGAAGTGGTTACGCCTCGCCTGTCCGGAGCGGCGAGCCTGAAC
GGCGAGCAGCGCGCCGACGTATGTGTGATCGGCGCCGGTTTCACCGGGCTTTCGGCTGCGCTCCACCTGCTG
GAGGCGGGCCGTTCGGTGTGCGTGCTGGAAGCGTACGAGGTCGGCCACGGCGGGTCGGGACGTAATGTCGGA
TTGATCAACGCCGGCACCTGGATTCCCCCGGACGAGGTGGTCGCCACCCTCGGCGCCGAGCAGGGAGAAAAG
CTCAACGCCGTGCTGGGGCGGGCGCCGGCGCTGGTGATGGAGACCATCGAACGCCTCGGCATCGATTGCCAG
TTGCGCCGCGAGGGCACCCTGCACATGTCGCACAACGCCAGCGGCGTGGCCGATCTGCAACGCCGTCACGCG
CAGTGGACGCGCCGCGGTGCTCCGCTGGAGTTGCTGACCGGCGCGGCTTGCCACGAGGCCTGCGGCACCCGG
CGAATCAGCGCGGCGTTGCTCGACCGACGCGCCGGCACTCTCAATCCCATGGCCTATTCGCGCGGACTGGCC
ACCGCCGTCGTACAGCGGGGCGGGCAACTCTACCAGCGCTCGCCGGTGCTCGCCCTGGAGCGGCAGGGCGCG
CTGTGGGCGGTGCGCAGCGCCGCGGGGGCGGTACTGGCGGAACAGGTGGTGATCGCTTCCAACGCCTATACC
GAGGGCGAGTGGACCAACCTGAGGCGGCACTTCTTTCCCGGCTACTACTACCAGGTGGCTTCGGCGCCGCTG
CACGGCGCCGCGGCCGAGCGCATCCTGCCTCACGGCCAGGGTTCCTGGGACACCAGGACGGTGCTCAGCAGC
ATCCGTCGCGATGCCCAGGGTCGCCTATTGCTGGGAAGCCTCGGCAATGGCGCGAACAAGCCCGCCTGGTTC
CTGCGGCAATGGGCCGATCGAATCCAGAGCCATTACTTTCCCGACCTGGGCCAGGTCAACTGGGAGTACAGC
TGGACGGGTTGCATCGCCTTCACCCCCGATCATCTGATGCGCCTGTTCGAGCCTGCGCAAGGCTTGCTGGCG
GTGACCGGCTACAACGGACGCGGCGTGACCACCGGTACGGTAGTGGGCAAGGCGTTCGCCGACTACTTGCTG
AGCGGCGAGCGAGCGACATTGCCGTTGCCGTTCAGTGACATGAAGCCCGTCCCCGCGGCCAGGCTGCGCAGT
TGCGCCTACGAGATGGGTTTTTCTCTCTATCACGCCGGTCAATGCTTGCGCGTGGTTCTCTAG
Translation:
MGGLQQRCLWEVVTPRLSGAASLNGEQRADVCVIGAGFTGLSAALHLLEAGRSVCVLEAYEVGHGGSGRNVG
LINAGTWIPPDEVVATLGAEQGEKLNAVLGRAPALVMETIERLGIDCQLRREGTLHMSHNASGVADLQRRHA
QWTRRGAPLELLTGAACHEACGTRRISAALLDRRAGTLNPMAYSRGLATAVVQRGGQLYQRSPVLALERQGA
LWAVRSAAGAVLAEQVVIASNAYTEGEWTNLRRHFFPGYYYQVASAPLHGAAAERILPHGQGSWDTRTVLSS
IRRDAQGRLLLGSLGNGANKPAWFLRQWADRIQSHYFPDLGQVNWEYSWTGCIAFTPDHLMRLFEPAQGLLA
VTGYNGRGVTTGTVVGKAFADYLLSGERATLPLPFSDMKPVPAARLRSCAYEMGFSLYHAGQCLRVVL*
AnnotationID:1201GeneID:1192
AnnotatorUID: danlee
Modification Date/Time: 2004-05-18 17:05:36
Gene Name:
Confidence Code:3
GeneProduct:probable oxidoreductase
Cell Localization:()
Synonyms:PA1028
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0665
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
        CD-Length = 387 residues, 100.0% aligned
        Score =  180 bits (457), Expect = 3e-46






   
Genomic Context:






   
Comment:


















    ReferenceID:2387




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19529




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1192
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2147
                           PA1028_tr
                           translation of PA1028
                           428
                           99.53
                           99.99
                           0
                           2240.0
     

     
     
71814
                           gb|AAG04417.1|AE004535_4
                           (AE004535) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
                           428
                           99.53
                           99.99
                           0
                           2240.0
     

     
     
71815
                           gb|AAN70822.1|AE016726_6
                           (AE016793) oxidoreductase, FAD-binding [Pseudomonas putida KT2440]
                           428
                           69.39
                           82.24
                           0
                           1600.0
     

     
     
71816
                           gb|AAO55410.1|
                           (AE016862) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           429
                           65.03
                           78.08
                           1
                           1481.0
     

     
     
71818
                           gb|AAN34077.1|AE014583_12
                           (AE014583) oxidoreductase, putative [Brucella suis 1330]
                           431
                           42.22
                           56.84
                           7
                           884.0
     

     






      

          
GC ORFID: 44194How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1028Glimmer Score: 

          
Start: 418751Stop: 420037

          
Length: 1287


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1028 translation of PA1028Homolog Bit Score 867.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7864 (ORF: BLASTX 579.0), t_PA1028 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGCGGTTTGCAGCAACGGTGTCTGTGGGAAGTGGTTACGCCTCGCCTGTCCGGAGCGGCGAGCCTGAAC 
GGCGAGCAGCGCGCCGACGTATGTGTGATCGGCGCCGGTTTCACCGGGCTTTCGGCTGCGCTCCACCTGCTG 
GAGGCGGGCCGTTCGGTGTGCGTGCTGGAAGCGTACGAGGTCGGCCACGGCGGGTCGGGACGTAATGTCGGA 
TTGATCAACGCCGGCACCTGGATTCCCCCGGACGAGGTGGTCGCCACCCTCGGCGCCGAGCAGGGAGAAAAG 
CTCAACGCCGTGCTGGGGCGGGCGCCGGCGCTGGTGATGGAGACCATCGAACGCCTCGGCATCGATTGCCAG 
TTGCGCCGCGAGGGCACCCTGCACATGTCGCACAACGCCAGCGGCGTGGCCGATCTGCAACGCCGTCACGCG 
CAGTGGACGCGCCGCGGTGCTCCGCTGGAGTTGCTGACCGGCGCGGCTTGCCACGAGGCCTGCGGCACCCGG 
CGAATCAGCGCGGCGTTGCTCGACCGACGCGCCGGCACTCTCAATCCCATGGCCTATTCGCGCGGACTGGCC 
ACCGCCGTCGTACAGCGGGGCGGGCAACTCTACCAGCGCTCGCCGGTGCTCGCCCTGGAGCGGCAGGGCGCG 
CTGTGGGCGGTGCGCAGCGCCGCGGGGGCGGTACTGGCGGAACAGGTGGTGATCGCTTCCAACGCCTATACC 
GAGGGCGAGTGGACCAACCTGAGGCGGCACTTCTTTCCCGGCTACTACTACCAGGTGGCTTCGGCGCCGCTG 
CACGGCGCCGCGGCCGAGCGCATCCTGCCTCACGGCCAGGGTTCCTGGGACACCAGGACGGTGCTCAGCAGC 
ATCCGTCGCGATGCCCAGGGTCGCCTATTGCTGGGAAGCCTCGGCAATGGCGCGAACAAGCCCGCCTGGTTC 
CTGCGGCAATGGGCCGATCGAATCCAGAGCCATTACTTTCCCGACCTGGGCCAGGTCAACTGGGAGTACAGC 
TGGACGGGTTGCATCGCCTTCACCCCCGATCATCTGATGCGCCTGTTCGAGCCTGCGCAAGGCTTGCTGGCG 
GTGACCGGCTACAACGGACGCGGCGTGACCACCGGTACGGTAGTGGGCAAGGCGTTCGCCGACTACTTGCTG 
AGCGGCGAGCGAGCGACATTGCCGTTGCCGTTCAGTGACATGAAGCCCGTCCCCGCGGCCAGGCTGCGCAGT 
TGCGCCTACGAGATGGGTTTTTCTCTCTATCACGCCGGTCAATGCTTGCGCGTGGTTCTCTAG