ViewGene
Locus Name:
GeneID:
Location:

GeneID:1191
TrivialName: PA14_32660
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32660
PAO1 Ortholog Locus:PA2472
Sequence Length:1347
Protein Length:448
Start: 2837511
Stop: 2836165
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05860.1|AE004675_1 (AE004675) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 446/448 (99%), Positives = 446/448 (99%)
Sequence:
ATGCCTACGCCCGACAAGAACAACAAGATCGACGTCCAGGCCTTCATCGATGCGCAGGCGGTTTCCGCCTTC
CAGTTGCGAGTCCTGTCGCTGTGCTTCCTGATCGTCGCCATGGACGGATTCGACACCGCCGCCATCGGCTTC
ATCGCCCCGGCCCTGGCCCACGACTGGCAACTGAGCCCGGCGCAACTCAGCCCGATCCTCGGCGCCGCACTG
GCCGGCCTGGCCCTCGGCGCCTTCGCCGCCGGCCCGCTGGCCGACCGTTTCGGACGCAAGAGCGTGCTCCTG
CTCTCGGTGCTGTTCTTCGGCGGCTGGAGCCTCGCCTCGGCCTACGCCGGTTCGGTGGAAACCCTGGCCCTG
CTGCGCTTTTTCACCGGCCTCGGCCTGGGCGGGGCGATGCCCAACGCGATCACCCTGACCTCCGAATACTGC
CCGCGCCGGCACCGCGCGCTGATGGTCACCGCAATGTTCTGCGGTTTCACCCTCGGCTCGGCGCTGGGCGGC
CTGCTCGCCGCGCGGATGGTCCCGGCGCTGGGCTGGGAAAGCGTGCTGCTGCTCGGCGGCGGCCTGCCCCTG
GCGAGCCTGCCGCTGCTCTGGGCATGCCTGCCGGAGTCGGTGCGCTTCCTCGCCCGCCGCGCACCGGACGCG
GCGCGCCTGCGGCGCATCCTCGAACGCCTGGGGCGCCTGCCCGACGGCTGGGCCGGGCGCCTCGAACTGCCC
GCCGACGAGTCCGACGGCACCTCGCCCCTGCGGCAGATCCTCGGCGCCGAGCTGCGCGGCGGCACCCTGCTG
CTCTGGGCCACCTTTTTCATGGGCCTGCTGATCATCTACCTGCTGACCAACTGGCTGCCGACGCTGATCGGC
GGCACCGGCTTCAGTCTCGGCGAGGCGGCGACGATCAGCGCCATGTTCCAGCTCGGCGGCACCCTCGGCGCA
CTCCTCCTGGGCAGCGCCATGGATCGCTTCGACGCGCACCGGGTGCTGAGCCTGGCCTACGTCGGCGGCGCC
CTGTTCATCCTCGGCATCGCCAGCCTCTACCACAGCTTCGCCCTGCTGGCGCTGTGCGTCGCCGGCGTCGGT
TTCTGCATCAGCGGCTCGCAGGTCGGCGCCAACGCCCTGGCCGCCGATTTCTATCCGACCCGCAGCCGCGCC
ACCGGGGTCAGCTGGGCCCTCGGCCTGGGCCGCATCGGCTCGATCGTCGGCTCCCTCAGCGGCGGCGCCCTG
CTCGGCCTGGGCCTTGGCTTCAGCGGCATCCTCGCCCTGCTGGTGATCCCGGCGCTGCTCGCCGCCGTGGCC
GTGCATCGCCTGGGCCGGCGCCGGGCCAGGCCTTCTTCCGTCACTCTCTGA
Translation:
MPTPDKNNKIDVQAFIDAQAVSAFQLRVLSLCFLIVAMDGFDTAAIGFIAPALAHDWQLSPAQLSPILGAAL
AGLALGAFAAGPLADRFGRKSVLLLSVLFFGGWSLASAYAGSVETLALLRFFTGLGLGGAMPNAITLTSEYC
PRRHRALMVTAMFCGFTLGSALGGLLAARMVPALGWESVLLLGGGLPLASLPLLWACLPESVRFLARRAPDA
ARLRRILERLGRLPDGWAGRLELPADESDGTSPLRQILGAELRGGTLLLWATFFMGLLIIYLLTNWLPTLIG
GTGFSLGEAATISAMFQLGGTLGALLLGSAMDRFDAHRVLSLAYVGGALFILGIASLYHSFALLALCVAGVG
FCISGSQVGANALAADFYPTRSRATGVSWALGLGRIGSIVGSLSGGALLGLGLGFSGILALLVIPALLAAVA
VHRLGRRRARPSSVTL*
AnnotationID:1200GeneID:1191
AnnotatorUID: danlee
Modification Date/Time: 2004-03-08 17:05:20
Gene Name:
Confidence Code:3
GeneProduct:probable MFS transporter
Cell Localization:()
Synonyms:PA2472
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):Membrane proteins
EC Number:
Status:ACTIVE
Pathway:
Aromatic compound catabolism 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:2385




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19527




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1191
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2144
                           PA2472_tr
                           translation of PA2472
                           448
                           99.55
                           99.55
                           0
                           2244.0
     

     
     
71794
                           gb|AAG05860.1|AE004675_1
                           (AE004675) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           448
                           99.55
                           99.55
                           0
                           2244.0
     

     
     
71795
                           emb|CAD14795.1|
                           (AL646062) PUTATIVE 4-HYDROXYBENZOATE TRANSPORTER TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
                           466
                           51.28
                           65.02
                           30
                           1146.0
     

     
     
71803
                           gb|AAQ61262.1|
                           (AE016922) 3-hydroxyphenylpropionic acid transporter [Chromobacterium violaceum ATCC 12472]
                           459
                           50.54
                           63.39
                           28
                           1037.0
     

     
     
2145
                           PA0235_tr
                           translation of PA0235
                           454
                           48.45
                           63.43
                           12
                           1055.0
     

     






      

          
GC ORFID: 44193How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2472Glimmer Score: 

          
Start: 2116413Stop: 2117759

          
Length: 1347


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2472 translation of PA2472Homolog Bit Score 868.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1096 (ORF: BLASTX 424.0), t_PA0235 (ORF: BLASTX 414.0), t_PA2006 (ORF: BLASTX 319.0), t_PA2472 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCTACGCCCGACAAGAACAACAAGATCGACGTCCAGGCCTTCATCGATGCGCAGGCGGTTTCCGCCTTC 
CAGTTGCGAGTCCTGTCGCTGTGCTTCCTGATCGTCGCCATGGACGGATTCGACACCGCCGCCATCGGCTTC 
ATCGCCCCGGCCCTGGCCCACGACTGGCAACTGAGCCCGGCGCAACTCAGCCCGATCCTCGGCGCCGCACTG 
GCCGGCCTGGCCCTCGGCGCCTTCGCCGCCGGCCCGCTGGCCGACCGTTTCGGACGCAAGAGCGTGCTCCTG 
CTCTCGGTGCTGTTCTTCGGCGGCTGGAGCCTCGCCTCGGCCTACGCCGGTTCGGTGGAAACCCTGGCCCTG 
CTGCGCTTTTTCACCGGCCTCGGCCTGGGCGGGGCGATGCCCAACGCGATCACCCTGACCTCCGAATACTGC 
CCGCGCCGGCACCGCGCGCTGATGGTCACCGCAATGTTCTGCGGTTTCACCCTCGGCTCGGCGCTGGGCGGC 
CTGCTCGCCGCGCGGATGGTCCCGGCGCTGGGCTGGGAAAGCGTGCTGCTGCTCGGCGGCGGCCTGCCCCTG 
GCGAGCCTGCCGCTGCTCTGGGCATGCCTGCCGGAGTCGGTGCGCTTCCTCGCCCGCCGCGCACCGGACGCG 
GCGCGCCTGCGGCGCATCCTCGAACGCCTGGGGCGCCTGCCCGACGGCTGGGCCGGGCGCCTCGAACTGCCC 
GCCGACGAGTCCGACGGCACCTCGCCCCTGCGGCAGATCCTCGGCGCCGAGCTGCGCGGCGGCACCCTGCTG 
CTCTGGGCCACCTTTTTCATGGGCCTGCTGATCATCTACCTGCTGACCAACTGGCTGCCGACGCTGATCGGC 
GGCACCGGCTTCAGTCTCGGCGAGGCGGCGACGATCAGCGCCATGTTCCAGCTCGGCGGCACCCTCGGCGCA 
CTCCTCCTGGGCAGCGCCATGGATCGCTTCGACGCGCACCGGGTGCTGAGCCTGGCCTACGTCGGCGGCGCC 
CTGTTCATCCTCGGCATCGCCAGCCTCTACCACAGCTTCGCCCTGCTGGCGCTGTGCGTCGCCGGCGTCGGT 
TTCTGCATCAGCGGCTCGCAGGTCGGCGCCAACGCCCTGGCCGCCGATTTCTATCCGACCCGCAGCCGCGCC 
ACCGGGGTCAGCTGGGCCCTCGGCCTGGGCCGCATCGGCTCGATCGTCGGCTCCCTCAGCGGCGGCGCCCTG 
CTCGGCCTGGGCCTTGGCTTCAGCGGCATCCTCGCCCTGCTGGTGATCCCGGCGCTGCTCGCCGCCGTGGCC 
GTGCATCGCCTGGGCCGGCGCCGGGCCAGGCCTTCTTCCGTCACTCTCTGA