ViewGene
Locus Name:
GeneID:
Location:

GeneID:1190
TrivialName: PA14_72720
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72720
PAO1 Ortholog Locus:PA5511
Sequence Length:1344
Protein Length:447
Start: 6477685
Stop: 6476342
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08896.1|AE004963_9 (AE004963) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
Identities = 445/447 (99%), Positives = 446/447 (99%)
Sequence:
ATGAGCGACCAGGTGATCTTCGTCGACGACGAAGCGACGATCCGCGAAGCGGTGCAGCAATGGCTGGAGCTG
TCCGGCTTCGAGGTGCGCCTGTGCCTGCGCGCCGAGGAATGCCTGGAAGCGTTGGACAAGTCCTTCGCCGGG
GTGGTCATCAGCGATGTGCGCATGCCCGGCATGGACGGCCTGCAACTGCTCGCCAACCTGCAGGCGGTTGAT
CGCGACCTGCCGGTGATCGTGGTCACCGGGCACGGCGACGTGCCGATGGCGGTGGAGGCCATGCGCCAGGGC
GCCTACGACTTCATCGAGAAACCCTTCACGCCCGAGCGCCTGCTCGGCAGTTTGCGGCGCGCGCTGGAAAAG
CGCCGCCTGGTGCTGGAGAACCGGCGCCTGAAGGAGCAGGCCAGTCTCAAGGACCAGGTCGATGCGCGTCTG
CTCGGCGTGTCCAAGCCGATGGAAGCGTTGCGCCGGCAGGTTCTGGCCCTGGCGCCGACCCCGGTGAACGTC
CTGATCCGTGGTGAGACCGGCAGCGGCAAGGAACTGGTTGCCCGCTGCCTGCACGACTTCGGGCCGCGCGCC
GACAAGCCGTTCGTGGCGCTGAACTGCGCGGCGATTCCCGAGCAACTGTTCGAGAGCGAGCTGTTCGGTCAT
GAGAGCGGTGCCTTCACCGGCGCGCAGGGCAAGCGCATCGGCAAGCTCGAGCATGCCCATGGCGGCACCCTG
TTCCTCGACGAGATCGAAAGCATGCCGTTGGCGCAGCAGGTCAAGCTGCTGCGCGTCCTGCAGGAGCAGCAA
CTGGAGCGGCTCGGCTCGAACCAGAGTATCCACGTCGACCTGCGGGTGATTGCCGCGACCAAGCCCGACCTG
CTGGCCGAAGCACGTGCCGGACGCTTCCGCGAGGACCTGGTGTATCGCCTGAACGTCGCCGAGCTGCGCCTG
CCGCCGATCCGCGAGCGTCGCGAGGACATCCCGCTGCTCTTCGAACATTTCGCCAGCGTTGCCAGCCAGCGC
CTCGGCCGCGAGCCGCAGCCCGCCGCGCCGGCGGAACTGGCGCGGCTGATGGCCCACGACTGGCCGGGCAAT
GTACGCGAGCTGGCCAACGCCGCCGAGCGTCATGTCCTCGGCCTGGAGCGCGGGGACGCGGAGGAAGGCGGC
GGCCTCACCTCGGGGCTGGCGGAACGCATGGAAGCCTTCGAGGCGGAGTGCCTGCGCCAGGCGCTCGGCCAG
TGCCGCGGGGACATCAAGGCGGTGATGGAGTTGCTGCAACTGCCGCGTCGGACACTCAACGAAAAGATGCTG
CGGCATGGCCTCAGCCGCAGCGATTTCGTCGGTGAAGAGCCGGCCTGA
Translation:
MSDQVIFVDDEATIREAVQQWLELSGFEVRLCLRAEECLEALDKSFAGVVISDVRMPGMDGLQLLANLQAVD
RDLPVIVVTGHGDVPMAVEAMRQGAYDFIEKPFTPERLLGSLRRALEKRRLVLENRRLKEQASLKDQVDARL
LGVSKPMEALRRQVLALAPTPVNVLIRGETGSGKELVARCLHDFGPRADKPFVALNCAAIPEQLFESELFGH
ESGAFTGAQGKRIGKLEHAHGGTLFLDEIESMPLAQQVKLLRVLQEQQLERLGSNQSIHVDLRVIAATKPDL
LAEARAGRFREDLVYRLNVAELRLPPIRERREDIPLLFEHFASVASQRLGREPQPAAPAELARLMAHDWPGN
VRELANAAERHVLGLERGDAEEGGGLTSGLAERMEAFEAECLRQALGQCRGDIKAVMELLQLPRRTLNEKML
RHGLSRSDFVGEEPA*
AnnotationID:1199GeneID:1190
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 09:09:01
Gene Name:
Confidence Code:3
GeneProduct:putative C4-dicarboxylate transport transcriptional regulatory protein
Cell Localization:()
Synonyms:dctD
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:putative sigma-54 dependent transcriptional regulator/response regulator
Functional Category Confidence Code:5
COGs:COG2204,pfam00158
Secondary Functional Category(ies):transcriptional regulator
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67024.1|AE016331_1 (AE016779) C4-dicarboxylate transport transcriptional regulatory
           protein [Pseudomonas putida KT2440]
          Length = 444

 Score =  650 bits (1676), Expect = 0.0
 Identities = 336/444 (75%), Positives = 376/444 (84%), Gaps = 1/444 (0%)

>gb|AAO57743.1| (AE016871) sigma-54 dependent transcriptional regulator/response
           regulator [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 444

 Score =  620 bits (1599), Expect = e-177
 Identities = 319/444 (71%), Positives = 369/444 (83%), Gaps = 1/444 (0%)








 
Structural Features:
COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, 
and DNA-binding domains 
[Signal transduction mechanisms]
CD-Length = 464 residues,  99.6% aligned
Score =  512 bits (1320), Expect = 3e-146
Identities = 238/465 (51%), Positives = 300/465 (64%), Gaps = 24/465 (5%)

pfam00158, Sigma54_activat, Sigma-54 interaction domain.
CD-Length = 222 residues,  99.5% aligned
Score =  293 bits (753), Expect = 2e-80
Identities = 129/221 (58%), Positives = 155/221 (70%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2383




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19525




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33281




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1190_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1190
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2126
                           PA5511_tr
                           translation of PA5511
                           447
                           99.55
                           99.77
                           0
                           2245.0
     

     
     
71282
                           gb|AAG08896.1|AE004963_9
                           (AE004963) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
                           447
                           99.55
                           99.77
                           0
                           2245.0
     

     
     
71283
                           gb|AAN67024.1|AE016331_1
                           (AE016779) C4-dicarboxylate transport transcriptional regulatory protein [Pseudomonas putida KT2440]
                           447
                           75.16
                           84.11
                           3
                           1677.0
     

     
     
71284
                           gb|AAO57743.1|
                           (AE016871) sigma-54 dependent transcriptional regulator/response regulator [Pseudomonas syringae pv. tomato str. DC3000]
                           451
                           70.95
                           82.26
                           11
                           1603.0
     

     
     
71288
                           gb|AAN66691.1|AE016297_5
                           (AE016778) sigma-54 dependent response regulator [Pseudomonas putida KT2440]
                           456
                           53.72
                           67.10
                           23
                           1165.0
     

     






      

          
GC ORFID: 44192How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5511Glimmer Score: 

          
Start: 5741374Stop: 5740031

          
Length: 1344


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5511 translation of PA5511Homolog Bit Score 869.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6135 (ORF: BLASTX 448.0), t_PA1335 (ORF: BLASTX 432.0), t_PA4547 (ORF: BLASTX 299.0), t_PA1945 (ORF: BLASTX 263.0), t_PA2354 (ORF: BLASTX 229.0), psyr_15may02_Scaffold7_revised_gene7248 (ORF: BLASTX 226.0), psyr_15may02_Scaffold3_revised_gene4480 (ORF: BLASTX 222.0), psyr_15may02_Scaffold3_revised_gene4481 (ORF: BLASTX 222.0), t_PA1196 (ORF: BLASTX 204.0), psyr_15may02_Scaffold2_revised_gene3237 (ORF: BLASTX 165.0), t_PA3932 (ORF: BLASTX 164.0), t_PA5511 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGACCAGGTGATCTTCGTCGACGACGAAGCGACGATCCGCGAAGCGGTGCAGCAATGGCTGGAGCTG 
TCCGGCTTCGAGGTGCGCCTGTGCCTGCGCGCCGAGGAATGCCTGGAAGCGTTGGACAAGTCCTTCGCCGGG 
GTGGTCATCAGCGATGTGCGCATGCCCGGCATGGACGGCCTGCAACTGCTCGCCAACCTGCAGGCGGTTGAT 
CGCGACCTGCCGGTGATCGTGGTCACCGGGCACGGCGACGTGCCGATGGCGGTGGAGGCCATGCGCCAGGGC 
GCCTACGACTTCATCGAGAAACCCTTCACGCCCGAGCGCCTGCTCGGCAGTTTGCGGCGCGCGCTGGAAAAG 
CGCCGCCTGGTGCTGGAGAACCGGCGCCTGAAGGAGCAGGCCAGTCTCAAGGACCAGGTCGATGCGCGTCTG 
CTCGGCGTGTCCAAGCCGATGGAAGCGTTGCGCCGGCAGGTTCTGGCCCTGGCGCCGACCCCGGTGAACGTC 
CTGATCCGTGGTGAGACCGGCAGCGGCAAGGAACTGGTTGCCCGCTGCCTGCACGACTTCGGGCCGCGCGCC 
GACAAGCCGTTCGTGGCGCTGAACTGCGCGGCGATTCCCGAGCAACTGTTCGAGAGCGAGCTGTTCGGTCAT 
GAGAGCGGTGCCTTCACCGGCGCGCAGGGCAAGCGCATCGGCAAGCTCGAGCATGCCCATGGCGGCACCCTG 
TTCCTCGACGAGATCGAAAGCATGCCGTTGGCGCAGCAGGTCAAGCTGCTGCGCGTCCTGCAGGAGCAGCAA 
CTGGAGCGGCTCGGCTCGAACCAGAGTATCCACGTCGACCTGCGGGTGATTGCCGCGACCAAGCCCGACCTG 
CTGGCCGAAGCACGTGCCGGACGCTTCCGCGAGGACCTGGTGTATCGCCTGAACGTCGCCGAGCTGCGCCTG 
CCGCCGATCCGCGAGCGTCGCGAGGACATCCCGCTGCTCTTCGAACATTTCGCCAGCGTTGCCAGCCAGCGC 
CTCGGCCGCGAGCCGCAGCCCGCCGCGCCGGCGGAACTGGCGCGGCTGATGGCCCACGACTGGCCGGGCAAT 
GTACGCGAGCTGGCCAACGCCGCCGAGCGTCATGTCCTCGGCCTGGAGCGCGGGGACGCGGAGGAAGGCGGC 
GGCCTCACCTCGGGGCTGGCGGAACGCATGGAAGCCTTCGAGGCGGAGTGCCTGCGCCAGGCGCTCGGCCAG 
TGCCGCGGGGACATCAAGGCGGTGATGGAGTTGCTGCAACTGCCGCGTCGGACACTCAACGAAAAGATGCTG 
CGGCATGGCCTCAGCCGCAGCGATTTCGTCGGTGAAGAGCCGGCCTGA