ViewGene
Locus Name:
GeneID:
Location:

GeneID:119
TrivialName: PA14_66320
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_66320
PAO1 Ortholog Locus:PA5017
Sequence Length:2700
Protein Length:899
Start: 5912407
Stop: 5915106
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08402.1|AE004914_3 (AE004914) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 896/899 (99%), Positives = 897/899 (99%)
Sequence:
ATGAAAAGTCATCCCGATGCCGCCAGCCGTTCGGCGGCCGAGGTTGTCACGCAGCTACCCGTGCCGTCGCGG
CTCGGGCTGCTGCGTTTCGAGCGGCTGAACGAGCCGAGCTGGGCACTGCTGTTCCTCGATCCTGCCTGCGAG
CGCCAGCTCGGGCTGCCGGCGACTACCCTCTGCGCACTGCTCGATGCGCCTTACGCCAGCCTGATGGAACCC
GAGGCCCGCCACCGCCTGCACGAGCAGATCCAGCAGCAACTGGTGAAGCGCCCGCACTACCAGGTGAGCTAC
AAGCTGCACACACCCAACGGCGTGCTGACCATGCTGGAGTTCGGCGAAGCCTTCCAGCAGCATGGCCGCCAG
TTGCTGCACGGCTACCTGATGGTCGAGGAGCGACAGGAGAGCGCCGAGCGCAGCGAACAGTTGCTCGACCTG
GAATCGCAGAACCTGCGCCTGAAGGCGTCCCTGGACCTCTACCAGCGCTCCCAGGACGACCACCTGCAACAC
CTGCTGCGCTCGCGCACCCAGCAGAACCTGATCGTCCGCCTGGCCCGCCATCGCTACCTGTCCAGCGACCCG
CTGCTGGAAGCCGCGCAACTGATCACCCAGGCCGCCTGCGAAGCCTACGGCACCGCGCGCGCCGGCATCTGG
CGCCTGCTCGACGACCAGCGCCTGGAAGCGGTGACCGTCTACCGCCGCGACCTCGACCAGTACGAGAAGCCC
CAGAGCATCGACGCCAGCCGCTACCCCGCCTACCTCGAGGCGGTACACAGCGGGCGCGCCATCGACGCCCAC
AACGCCCAGCGCGACCCACGCACCCAGGAACTCTACAAGGACTACCTGAAGCCGCTGGGCGTCAACGCCCTG
CTCGACGCCACCATCCGCATCGGCGGCGAGGTGGTCGGCGTGCTGTGCCTGGAACACGCCGGCGAGAACCGC
ATGTGGCAGAGCGACGAGATCGCCTTCGCCGGGGAACTCGCCGACCAGTACGCGCAGGTCCTGATGAACCAC
GAGCGACGCAATGTCTCCAGCGCCCTGCACCTGTTCCAGCGCGCGGTGGAACAGAGCGCCAGCGCCTTCCTG
CTGATCGACCGCGACGGCGTGGTGGAATACGTCAATCCGAGCTTCACCTCGATCACCCAGTACAGCGCCGAC
GAAGTGCGTAACCGACGCCTGTCCGAGCTTCCGGCGCTGGAGAACCTCAGCGAGCTGCTGTTCGACGCGCGT
TCCGCGCTGACCCAGCAGAACAGCTGGCAGGGCGAGTTCCGCAGCCGCCGCAAGAACCACGAGCCTTACTGG
GGCCAGTTGTCGCTGTCGAAGGTCTACGACGATCTCGGCGAGCTGACCCACTACATCGGCATCTACGAAGAC
ATCACGCAGAACAAGCTGGCCCAGCAGCACATCGAGAAACTCGCCTACCGCGACAACCTCACCGGCCTGGCC
AACCGGCACTATTTCATCGGCGCCCTCGAGGAACGCCTGGAAAGCAGCGGCGACCGCCCGCTCAGCCTGCTG
CTGGTGGACATCGACAACTTCAAGCGGATCAATGACAGCCTCGGCCACCAGACCGGCGACAAGCTGCTGGTC
AGCCTGGCCCGGCGCTTGCGCAGTTGCCTCGGCGACAGCGCCACCCTGGCGCGCTTCGCCAGCAACGAGTTC
GCCGTGCTGCTCGACGACACCGCGGTGGAAAAGGGCGAAAGCATTGCCGCGCAGGTCCTGCACATGCTCGAC
AAGCCGCTGTTCGTCGACAACCAGTTGATCAACATCACCGGCTCCATCGGCCTGGCCAGCGCCCCGCAGCAC
GGCTGCGACCCGCAGACCCTGATGAAGTACGCCGGCCTGGCGCTGCACAAGGCCAAGGCCAACGGCAAGCAC
CAGGTCCAGGTGTTCACCGAGGCGCTGACCGCCGAGGCCAGCTACAAGCTGTTCGTCGAGAGCAACCTGCGC
CGCGCCCTGGCGCAGAACGAACTGGCGGTGCACTACCAGCCCAAGCTGTGCCTGCGCAGCGGCCAGTTGCTC
GGCCTGGAAGCCCTGCTGCGCTGGCAGCATCCGGAAAAAGGCATGATCCGCCCGGACCGCTTCATCAGCGTG
GCCGAGGAAACCGGGCTGATCGTGCCGATCGGCAAGTGGGTGATCCGCGAAGCCTGTCGCCAGGCCCGCGAG
CTGGCCGAGGCCGGGCTGGGCGAGCTGCAGATCGCCATCAACCTGTCGCCCAAGCAGTTCACCGACCCGGAC
CTGGTCGGCTCGATCGCGGCGATCCTCCACGAAGAGAACATTCCGGCCAGCCAGCTGGAACTGGAGCTCACC
GAAAGCCTGCTGCTGGACGCCACCGACGATACCCGCCAGCAACTCGAACGCCTGAAGAGCCTCGGCCTGACC
CTGGCGATGGACGACTTCGGCACCGGCTACTCGTCGCTGAGCTACCTGAAGAAATTCCCCATCGACGTGATC
AAGATCGACCGCAGCTTCATCAAGGACATCCCGGACAGCCAGGACGACATGGAAATCACCTCGGCGGTGATC
GCCATGGCCCACAACCTCAAGCTCAAGGTAGTCGCCGAAGGCGTGGAGAGCGCCGAGCAACTGGCCTTCCTC
CGGCGCAACCGCTGCGACATCGGCCAGGGCTACCTGTTCGACCGGCCGATCCCCAGCGACCTGCTCAATACC
AGCCTGCTGCGCTATCCCTGCCGCACCCTGCACTGA
Translation:
MKSHPDAASRSAAEVVTQLPVPSRLGLLRFERLNEPSWALLFLDPACERQLGLPATTLCALLDAPYASLMEP
EARHRLHEQIQQQLVKRPHYQVSYKLHTPNGVLTMLEFGEAFQQHGRQLLHGYLMVEERQESAERSEQLLDL
ESQNLRLKASLDLYQRSQDDHLQHLLRSRTQQNLIVRLARHRYLSSDPLLEAAQLITQAACEAYGTARAGIW
RLLDDQRLEAVTVYRRDLDQYEKPQSIDASRYPAYLEAVHSGRAIDAHNAQRDPRTQELYKDYLKPLGVNAL
LDATIRIGGEVVGVLCLEHAGENRMWQSDEIAFAGELADQYAQVLMNHERRNVSSALHLFQRAVEQSASAFL
LIDRDGVVEYVNPSFTSITQYSADEVRNRRLSELPALENLSELLFDARSALTQQNSWQGEFRSRRKNHEPYW
GQLSLSKVYDDLGELTHYIGIYEDITQNKLAQQHIEKLAYRDNLTGLANRHYFIGALEERLESSGDRPLSLL
LVDIDNFKRINDSLGHQTGDKLLVSLARRLRSCLGDSATLARFASNEFAVLLDDTAVEKGESIAAQVLHMLD
KPLFVDNQLINITGSIGLASAPQHGCDPQTLMKYAGLALHKAKANGKHQVQVFTEALTAEASYKLFVESNLR
RALAQNELAVHYQPKLCLRSGQLLGLEALLRWQHPEKGMIRPDRFISVAEETGLIVPIGKWVIREACRQARE
LAEAGLGELQIAINLSPKQFTDPDLVGSIAAILHEENIPASQLELELTESLLLDATDDTRQQLERLKSLGLT
LAMDDFGTGYSSLSYLKKFPIDVIKIDRSFIKDIPDSQDDMEITSAVIAMAHNLKLKVVAEGVESAEQLAFL
RRNRCDIGQGYLFDRPIPSDLLNTSLLRYPCRTLH*
AnnotationID:129GeneID:119
AnnotatorUID: diggins
Modification Date/Time: 2004-10-27 13:01:52
Gene Name:
Confidence Code:3
GeneProduct:putative sensory box protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65968.1|AE016225_1 (AE016775) sensory box protein [Pseudomonas putida KT2440]
          Length = 896

 Score = 1249 bits (3231), Expect = 0.0
 Identities = 632/894 (70%), Positives = 742/894 (82%), Gaps = 3/894 (0%)

>gb|AAO53950.1| (AE016857) sensory box/GGDEF domain/EAL domain protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 897

 Score = 1233 bits (3189), Expect = 0.0
 Identities = 626/896 (69%), Positives = 736/896 (82%), Gaps = 2/896 (0%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:241




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17383




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35044




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:119_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:119
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
224
                           PA5017_tr
                           translation of PA5017
                           899
                           99.66
                           99.77
                           0
                           4565.0
     

     
     
16744
                           gb|AAG08402.1|AE004914_3
                           (AE004914) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           899
                           99.66
                           99.77
                           0
                           4565.0
     

     
     
16745
                           gb|AAN65968.1|AE016225_1
                           (AE016775) sensory box protein [Pseudomonas putida KT2440]
                           899
                           70.30
                           82.64
                           3
                           3230.0
     

     
     
16746
                           gb|AAO53950.1|
                           (AE016857) sensory box/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           899
                           69.63
                           81.86
                           2
                           3188.0
     

     
     
16753
                           gb|AAQ59049.1|
                           (AE016914) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           975
                           31.38
                           45.94
                           209
                           1085.0
     

     






      

          
GC ORFID: 43121How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5017Glimmer Score: 

          
Start: 5176090Stop: 5178789

          
Length: 2700


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5017 translation of PA5017Homolog Bit Score 1763.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6833 (ORF: BLASTX 1223.0), t_PA0285 (ORF: BLASTX 401.0), psyr_15may02_Scaffold2_revised_gene4057 (ORF: BLASTX 330.0), t_PA5295 (ORF: BLASTX 322.0), t_PA5017 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAAGTCATCCCGATGCCGCCAGCCGTTCGGCGGCCGAGGTTGTCACGCAGCTACCCGTGCCGTCGCGG 
CTCGGGCTGCTGCGTTTCGAGCGGCTGAACGAGCCGAGCTGGGCACTGCTGTTCCTCGATCCTGCCTGCGAG 
CGCCAGCTCGGGCTGCCGGCGACTACCCTCTGCGCACTGCTCGATGCGCCTTACGCCAGCCTGATGGAACCC 
GAGGCCCGCCACCGCCTGCACGAGCAGATCCAGCAGCAACTGGTGAAGCGCCCGCACTACCAGGTGAGCTAC 
AAGCTGCACACACCCAACGGCGTGCTGACCATGCTGGAGTTCGGCGAAGCCTTCCAGCAGCATGGCCGCCAG 
TTGCTGCACGGCTACCTGATGGTCGAGGAGCGACAGGAGAGCGCCGAGCGCAGCGAACAGTTGCTCGACCTG 
GAATCGCAGAACCTGCGCCTGAAGGCGTCCCTGGACCTCTACCAGCGCTCCCAGGACGACCACCTGCAACAC 
CTGCTGCGCTCGCGCACCCAGCAGAACCTGATCGTCCGCCTGGCCCGCCATCGCTACCTGTCCAGCGACCCG 
CTGCTGGAAGCCGCGCAACTGATCACCCAGGCCGCCTGCGAAGCCTACGGCACCGCGCGCGCCGGCATCTGG 
CGCCTGCTCGACGACCAGCGCCTGGAAGCGGTGACCGTCTACCGCCGCGACCTCGACCAGTACGAGAAGCCC 
CAGAGCATCGACGCCAGCCGCTACCCCGCCTACCTCGAGGCGGTACACAGCGGGCGCGCCATCGACGCCCAC 
AACGCCCAGCGCGACCCACGCACCCAGGAACTCTACAAGGACTACCTGAAGCCGCTGGGCGTCAACGCCCTG 
CTCGACGCCACCATCCGCATCGGCGGCGAGGTGGTCGGCGTGCTGTGCCTGGAACACGCCGGCGAGAACCGC 
ATGTGGCAGAGCGACGAGATCGCCTTCGCCGGGGAACTCGCCGACCAGTACGCGCAGGTCCTGATGAACCAC 
GAGCGACGCAATGTCTCCAGCGCCCTGCACCTGTTCCAGCGCGCGGTGGAACAGAGCGCCAGCGCCTTCCTG 
CTGATCGACCGCGACGGCGTGGTGGAATACGTCAATCCGAGCTTCACCTCGATCACCCAGTACAGCGCCGAC 
GAAGTGCGTAACCGACGCCTGTCCGAGCTTCCGGCGCTGGAGAACCTCAGCGAGCTGCTGTTCGACGCGCGT 
TCCGCGCTGACCCAGCAGAACAGCTGGCAGGGCGAGTTCCGCAGCCGCCGCAAGAACCACGAGCCTTACTGG 
GGCCAGTTGTCGCTGTCGAAGGTCTACGACGATCTCGGCGAGCTGACCCACTACATCGGCATCTACGAAGAC 
ATCACGCAGAACAAGCTGGCCCAGCAGCACATCGAGAAACTCGCCTACCGCGACAACCTCACCGGCCTGGCC 
AACCGGCACTATTTCATCGGCGCCCTCGAGGAACGCCTGGAAAGCAGCGGCGACCGCCCGCTCAGCCTGCTG 
CTGGTGGACATCGACAACTTCAAGCGGATCAATGACAGCCTCGGCCACCAGACCGGCGACAAGCTGCTGGTC 
AGCCTGGCCCGGCGCTTGCGCAGTTGCCTCGGCGACAGCGCCACCCTGGCGCGCTTCGCCAGCAACGAGTTC 
GCCGTGCTGCTCGACGACACCGCGGTGGAAAAGGGCGAAAGCATTGCCGCGCAGGTCCTGCACATGCTCGAC 
AAGCCGCTGTTCGTCGACAACCAGTTGATCAACATCACCGGCTCCATCGGCCTGGCCAGCGCCCCGCAGCAC 
GGCTGCGACCCGCAGACCCTGATGAAGTACGCCGGCCTGGCGCTGCACAAGGCCAAGGCCAACGGCAAGCAC 
CAGGTCCAGGTGTTCACCGAGGCGCTGACCGCCGAGGCCAGCTACAAGCTGTTCGTCGAGAGCAACCTGCGC 
CGCGCCCTGGCGCAGAACGAACTGGCGGTGCACTACCAGCCCAAGCTGTGCCTGCGCAGCGGCCAGTTGCTC 
GGCCTGGAAGCCCTGCTGCGCTGGCAGCATCCGGAAAAAGGCATGATCCGCCCGGACCGCTTCATCAGCGTG 
GCCGAGGAAACCGGGCTGATCGTGCCGATCGGCAAGTGGGTGATCCGCGAAGCCTGTCGCCAGGCCCGCGAG 
CTGGCCGAGGCCGGGCTGGGCGAGCTGCAGATCGCCATCAACCTGTCGCCCAAGCAGTTCACCGACCCGGAC 
CTGGTCGGCTCGATCGCGGCGATCCTCCACGAAGAGAACATTCCGGCCAGCCAGCTGGAACTGGAGCTCACC 
GAAAGCCTGCTGCTGGACGCCACCGACGATACCCGCCAGCAACTCGAACGCCTGAAGAGCCTCGGCCTGACC 
CTGGCGATGGACGACTTCGGCACCGGCTACTCGTCGCTGAGCTACCTGAAGAAATTCCCCATCGACGTGATC 
AAGATCGACCGCAGCTTCATCAAGGACATCCCGGACAGCCAGGACGACATGGAAATCACCTCGGCGGTGATC 
GCCATGGCCCACAACCTCAAGCTCAAGGTAGTCGCCGAAGGCGTGGAGAGCGCCGAGCAACTGGCCTTCCTC 
CGGCGCAACCGCTGCGACATCGGCCAGGGCTACCTGTTCGACCGGCCGATCCCCAGCGACCTGCTCAATACC 
AGCCTGCTGCGCTATCCCTGCCGCACCCTGCACTGA