ViewGene
Locus Name:
GeneID:
Location:

GeneID:1189
TrivialName: PA14_12760
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12760
PAO1 Ortholog Locus:PA3950
Sequence Length:1350
Protein Length:449
Start: 1093058
Stop: 1094407
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07337.1|AE004813_4 (AE004813) probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
Identities = 447/449 (99%), Positives = 447/449 (99%)
Sequence:
ATGACGTTCGCTTCCCTCGGTCTGCTCGACCCCCTGCTCAAGGCCCTCGAAGGGCTCGGCCACGGCACGCCT
ACGCCGATCCAGGCCCAGGCCATACCCCCGGCGCTCAAGGGCCGCGACCTGCTCGCCGCAGCACAGACCGGC
ACCGGCAAGACCGCCGGTTTCGCCCTGCCGTTGCTGCAGCGGCTGACCCTGGAGGGGCCGCAGGTCGCTGCG
AACTCGGTGCGTGCACTGGTCCTGGTTCCGACCCGCGAACTGGCCGAGCAGGTCCACGCCAGCGTCCGCGAC
TACGGCCAGCACCTGCCGCTGCGTACCGCGGTGGCCTACGGTGGGGTCAGCATCAACCCGCAGATGATGAAG
CTGCGCAAGGGGGTGGATATCCTCGTCGCCACTCCCGGGCGGCTGCTCGACCTGTATCGGCAGAACGCGGTG
AAGTTCGCCCAGCTCCAGGCGCTGGTGCTGGACGAAGCCGATCGCATGCTCGACCTCGGTTTCGCCCGCGAG
TTGGACGAGCTGTTCGCCGCGCTGCCGCGCAAGCGCCAGACCCTGCTGTTTTCCGCGACTTTCTCCGACGCC
ATCCGCACGCTGGCCCGCGAACTGCTGCGCGACCCGCTGTCCATCGAGGTCAGTCCGCGCAATACCGCGGCG
AAGAGCGTCAGGCAATGGCTGGTGCCGGTGGACAAGAAGCGCAAGGCCGAGCTGTTCTGCCACCTGTTGCAG
GCCAATCGCTGGCGCCAGGCGCTGGTCTTCGCCAAGACCCGCAAGAGCGTCGAGGAACTGGTCGGACTGTTG
CAGCGCCAGGGTATCGCCGCCGACTCGATCCATGGCGACAAGCCGCAGCCGGCGCGGCTGCGCGCCTTGCAG
CGGTTCAAGGCCGGCGAGGTAGACCTGCTGGTAGCCACCGACGTGGCCGCGCGTGGCCTGGATATCGAGGAA
ATGCCGCTGGTGGTCAACTTCGACCTGCCGATCGTCGCCGAGGACTACGTGCATCGCATCGGCCGTACCGGC
CGTGCCGGGGCCTCCGGCCAGGCGGTGTCACTGGTCTGCGCCGACGAAGTGGAGCTGCTGGCGGCGATCGAG
ACACTGATCGGGCAGACCCTGCAGCGCCGCGAGGAGCCCGACTTCGCGCCGGAACACCGGGTGCCGCAGACC
GCGCCGGGCGGCGTGGTGCTGAAGAAACCGAAGAAGCCGAAGAAACCCAAGGCCGCGGAGAGCGCCGGCAAG
CCCGGCAAGATCCACTTGGGCAGTTGGTTCGACAGCAGCGCGCCGACGGTCAAGGCGGTGCGCAAGGCGCCG
GGCTTCGGCGCGGGCGCGGCGGGCAAGCCGAAGAAGCGGCCGTCCGGCAAATAG
Translation:
MTFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLLQRLTLEGPQVAA
NSVRALVLVPTRELAEQVHASVRDYGQHLPLRTAVAYGGVSINPQMMKLRKGVDILVATPGRLLDLYRQNAV
KFAQLQALVLDEADRMLDLGFARELDELFAALPRKRQTLLFSATFSDAIRTLARELLRDPLSIEVSPRNTAA
KSVRQWLVPVDKKRKAELFCHLLQANRWRQALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQ
RFKAGEVDLLVATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLAAIE
TLIGQTLQRREEPDFAPEHRVPQTAPGGVVLKKPKKPKKPKAAESAGKPGKIHLGSWFDSSAPTVKAVRKAP
GFGAGAAGKPKKRPSGK*
AnnotationID:1198GeneID:1189
AnnotatorUID: urbach
Modification Date/Time: 2004-05-21 14:02:01
Gene Name:
Confidence Code:3
GeneProduct:probable ATP-dependent RNA helicase
Cell Localization:()
Synonyms:PA3950
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(24) Transcription, RNA processing and degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0513, KOG0331, KOG0330
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gb|AAA53653.1| (L02123) ATP-dependent RNA helicase
[Escherichia coli]
Length: 473
PctIdentity: 49.04
PctSimilarity: 62.79
Gaps: 43
BitScore: 1093.0






 
Structural Features:
gnl|CDD|10384 COG0513, SrmB, Superfamily II DNA and RNA helicases
[DNA replication, recombination, and repair / Transcription  / Translation, ribosomal structure and biogenesis]
Length = 513
Score =  406 bits (1045), Expect = e-114
Identities = 204/45






   
Genomic Context:






   
Comment:


















    ReferenceID:2381




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19523




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1189
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2120
                           PA3950_tr
                           translation of PA3950
                           449
                           99.55
                           99.55
                           0
                           2246.0
     

     
     
71040
                           gb|AAG07337.1|AE004813_4
                           (AE004813) probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
                           449
                           99.55
                           99.55
                           0
                           2246.0
     

     
     
71042
                           gb|AAN70336.1|AE016675_6
                           (AE016791) ATP-dependent RNA helicase, DEAD box family [Pseudomonas putida KT2440]
                           454
                           70.26
                           79.95
                           16
                           1592.0
     

     
     
71041
                           gb|AAO58110.1|
                           (AE016872) ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           453
                           69.97
                           81.01
                           15
                           1620.0
     

     
     
71047
                           gb|AAF96116.1|
                           (AE004360) ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 biovar eltor str. N16961]
                           464
                           53.66
                           66.81
                           28
                           1171.0
     

     






      

          
GC ORFID: 44191How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3950Glimmer Score: 

          
Start: 3860880Stop: 3859531

          
Length: 1350


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA3950 translation of PA3950Homolog Bit Score 869.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5383 (ORF: BLASTX 621.0), t_PA3466 (ORF: BLASTX 295.0), psyr_15may02_Scaffold5_revised_gene6356 (ORF: BLASTX 280.0), t_PA0455 (ORF: BLASTX 254.0), psyr_15may02_Scaffold2_revised_gene3687 (ORF: BLASTX 244.0), t_PA3950 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACGTTCGCTTCCCTCGGTCTGCTCGACCCCCTGCTCAAGGCCCTCGAAGGGCTCGGCCACGGCACGCCT 
ACGCCGATCCAGGCCCAGGCCATACCCCCGGCGCTCAAGGGCCGCGACCTGCTCGCCGCAGCACAGACCGGC 
ACCGGCAAGACCGCCGGTTTCGCCCTGCCGTTGCTGCAGCGGCTGACCCTGGAGGGGCCGCAGGTCGCTGCG 
AACTCGGTGCGTGCACTGGTCCTGGTTCCGACCCGCGAACTGGCCGAGCAGGTCCACGCCAGCGTCCGCGAC 
TACGGCCAGCACCTGCCGCTGCGTACCGCGGTGGCCTACGGTGGGGTCAGCATCAACCCGCAGATGATGAAG 
CTGCGCAAGGGGGTGGATATCCTCGTCGCCACTCCCGGGCGGCTGCTCGACCTGTATCGGCAGAACGCGGTG 
AAGTTCGCCCAGCTCCAGGCGCTGGTGCTGGACGAAGCCGATCGCATGCTCGACCTCGGTTTCGCCCGCGAG 
TTGGACGAGCTGTTCGCCGCGCTGCCGCGCAAGCGCCAGACCCTGCTGTTTTCCGCGACTTTCTCCGACGCC 
ATCCGCACGCTGGCCCGCGAACTGCTGCGCGACCCGCTGTCCATCGAGGTCAGTCCGCGCAATACCGCGGCG 
AAGAGCGTCAGGCAATGGCTGGTGCCGGTGGACAAGAAGCGCAAGGCCGAGCTGTTCTGCCACCTGTTGCAG 
GCCAATCGCTGGCGCCAGGCGCTGGTCTTCGCCAAGACCCGCAAGAGCGTCGAGGAACTGGTCGGACTGTTG 
CAGCGCCAGGGTATCGCCGCCGACTCGATCCATGGCGACAAGCCGCAGCCGGCGCGGCTGCGCGCCTTGCAG 
CGGTTCAAGGCCGGCGAGGTAGACCTGCTGGTAGCCACCGACGTGGCCGCGCGTGGCCTGGATATCGAGGAA 
ATGCCGCTGGTGGTCAACTTCGACCTGCCGATCGTCGCCGAGGACTACGTGCATCGCATCGGCCGTACCGGC 
CGTGCCGGGGCCTCCGGCCAGGCGGTGTCACTGGTCTGCGCCGACGAAGTGGAGCTGCTGGCGGCGATCGAG 
ACACTGATCGGGCAGACCCTGCAGCGCCGCGAGGAGCCCGACTTCGCGCCGGAACACCGGGTGCCGCAGACC 
GCGCCGGGCGGCGTGGTGCTGAAGAAACCGAAGAAGCCGAAGAAACCCAAGGCCGCGGAGAGCGCCGGCAAG 
CCCGGCAAGATCCACTTGGGCAGTTGGTTCGACAGCAGCGCGCCGACGGTCAAGGCGGTGCGCAAGGCGCCG 
GGCTTCGGCGCGGGCGCGGCGGGCAAGCCGAAGAAGCGGCCGTCCGGCAAATAG