ViewGene
Locus Name:
GeneID:
Location:

GeneID:1188
TrivialName: PA14_30320
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30320
PAO1 Ortholog Locus:PA2613
Sequence Length:1326
Protein Length:441
Start: 2625768
Stop: 2627093
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06001.1|AE004690_1 (AE004690) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 440/441 (99%), Positives = 440/441 (99%)
Sequence:
GTGGATCTGTTCCGCAGCGAGCCCGTCGCGCAGCCCCTGGCGGCACGGCTGAGGCCCGCAAACCTGGACGAG
TACGTGGGGCAGGAACACCTGCTGGCCCGCGGTAAGCCCTTGCGCGAGGCGCTGGAGCAGGGCGCGCTGCAC
TCGATGATCTTCTGGGGCCCGCCGGGAGTCGGCAAGACCACCCTGGCGCGGCTGCTGGCGCAGGTGTCGGAC
GCTCATTTCGAGACCATTTCCGCGGTGCTGTCCGGGGTCAAGGAGATCCGCCAGGCGGTCGAGGTGGCCAAG
CAGCACGCGGCGCAATACGGGCGCCGGACCATCCTGTTCGTCGACGAGGTGCACCGCTTCAACAAGAGCCAG
CAGGATGCCTTCCTGCCCTATGTGGAAGACGGCACGCTGATCTTCATTGGCGCGACCACCGAGAACCCGTCC
TTCGAGTTGAACAACGCGCTGCTCTCGCGGGCTCGCGTGTATGTCCTCAAGAGCCTCGACGAAGCCGCCCTG
CGCAAGCTGGTGGGCCGCGCGCTGAACGAGGACAAGGGCCTCGGCAAGCGCAAGCTGAGCCTGCCGGAGGAG
AGCTTCCAGGTTCTCCTGGCCGCCGCCGACGGCGATGGGCGGCGCCTGCTGAACCTGCTGGAGAACGCTGCC
GACCTCGCCGAGGACGGCAGCGAGATCAGCCCCGAGCTGCTGCAGAATCTGCTCGGCGATACCCGCCGACGT
TTCGACAAGGGCGGCGAGGCGTTCTACGACCAGATCAGCGCGCTGCACAAGTCGGTGCGCGGCTCCAATCCC
GATGCGGCACTCTATTGGTTCGCGCGCATGCTCGACGGCGGCTGCGATCCCCTGTACATCGCCCGGCGGGTG
GTGCGCATGGCCAGCGAGGAGGTTGGCAATGCTGATCCTCGCGCCCTCGGCCTGTGCCTGTCGGCCTGGGAC
GTGCAGGAGCGCCTGGGCAGCCCCGAAGGCGAGCTGGCGGTGGCCCAGGCCATCGTCTACCTGGCCTGTGCG
CCGAAGAGCAATGCGGTGTACAGCGCGTTCAACGCGGCGATGCGCGACGTCGCCGAAAGCGGCTCGCGGGAA
GTGCCATTGCACTTGCGCAACGCGCCGACCAAATTGATGAAGAGCCTCGGCTATGGCGAGGAATACCGCTAC
GCCCACGACGAGCCGGATGCCTATGCCGCCGGAGAGGATTATTTCCCCGAGGATCTGGAGCCGCGGCGTTAC
TATCAACCGGTGCCGAGGGGCCTGGAACTGAAGATCCGCGACAAGCTGGAACACCTGGCCGAGCTGGATCGC
ACCAGTCCCCGCCAACGCAGAAAATCCTGA
Translation:
MDLFRSEPVAQPLAARLRPANLDEYVGQEHLLARGKPLREALEQGALHSMIFWGPPGVGKTTLARLLAQVSD
AHFETISAVLSGVKEIRQAVEVAKQHAAQYGRRTILFVDEVHRFNKSQQDAFLPYVEDGTLIFIGATTENPS
FELNNALLSRARVYVLKSLDEAALRKLVGRALNEDKGLGKRKLSLPEESFQVLLAAADGDGRRLLNLLENAA
DLAEDGSEISPELLQNLLGDTRRRFDKGGEAFYDQISALHKSVRGSNPDAALYWFARMLDGGCDPLYIARRV
VRMASEEVGNADPRALGLCLSAWDVQERLGSPEGELAVAQAIVYLACAPKSNAVYSAFNAAMRDVAESGSRE
VPLHLRNAPTKLMKSLGYGEEYRYAHDEPDAYAAGEDYFPEDLEPRRYYQPVPRGLELKIRDKLEHLAELDR
TSPRQRRKS*
AnnotationID:1197GeneID:1188
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 11:11:45
Gene Name:
Confidence Code:3
GeneProduct:putative ATPase associated with chromosome architecture
Cell Localization:()
Synonyms:ycaJ
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:putative polynucleotide enzyme
Functional Category Confidence Code:5
COGs:COG2256
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69596.1|AE016593_4 (AE016788) ATPase, AAA family [Pseudomonas putida KT2440]
          Length = 441

 Score =  780 bits (2013), Expect = 0.0
 Identities = 384/440 (87%), Positives = 414/440 (94%)

>gb|AAO56825.1| (AE016868) ATPase, AAA family [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 440

 Score =  769 bits (1986), Expect = 0.0
 Identities = 382/440 (86%), Positives = 410/440 (93%)

>gb|AAL19897.1| (AE008741) putative polynucleotide enzyme [Salmonella typhimurium
           LT2]
          Length = 447

 Score =  525 bits (1353), Expect = e-148
 Identities = 267/438 (60%), Positives = 331/438 (75%), Gaps = 6/438 (1%)






 
Structural Features:
COG2256, MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase 
[DNA replication, recombination, and repair]
CD-Length = 436 residues,  99.1% aligned
Score =  629 bits (1624), Expect = 0.0
Identities = 263/434 (60%), Positives = 325/434 (74%), Gaps = 3/434 (0%)








   
Genomic Context:






   
Comment:


















    ReferenceID:14301




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19521




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33177




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1188_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1188
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2119
                           PA2613_tr
                           translation of PA2613
                           441
                           99.77
                           99.77
                           0
                           2245.0
     

     
     
70967
                           gb|AAG06001.1|AE004690_1
                           (AE004690) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           441
                           99.54
                           99.77
                           0
                           2242.0
     

     
     
70968
                           gb|AAN69596.1|AE016593_4
                           (AE016788) ATPase, AAA family [Pseudomonas putida KT2440]
                           441
                           86.84
                           93.87
                           0
                           2008.0
     

     
     
70969
                           gb|AAO56825.1|
                           (AE016868) ATPase, AAA family [Pseudomonas syringae pv. tomato str. DC3000]
                           441
                           86.39
                           92.97
                           1
                           1982.0
     

     
     
70975
                           emb|CAD16045.1|
                           (AL646069) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
                           455
                           62.19
                           72.52
                           20
                           1364.0
     

     






      

          
GC ORFID: 44190How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2613Glimmer Score: 

          
Start: 2328158Stop: 2326833

          
Length: 1326


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2613 translation of PA2613Homolog Bit Score 869.0

          
Other Homologs:  psyr_15may02_Scaffold17_revised_gene2814 (ORF: BLASTX 768.0), t_PA2613 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGATCTGTTCCGCAGCGAGCCCGTCGCGCAGCCCCTGGCGGCACGGCTGAGGCCCGCAAACCTGGACGAG 
TACGTGGGGCAGGAACACCTGCTGGCCCGCGGTAAGCCCTTGCGCGAGGCGCTGGAGCAGGGCGCGCTGCAC 
TCGATGATCTTCTGGGGCCCGCCGGGAGTCGGCAAGACCACCCTGGCGCGGCTGCTGGCGCAGGTGTCGGAC 
GCTCATTTCGAGACCATTTCCGCGGTGCTGTCCGGGGTCAAGGAGATCCGCCAGGCGGTCGAGGTGGCCAAG 
CAGCACGCGGCGCAATACGGGCGCCGGACCATCCTGTTCGTCGACGAGGTGCACCGCTTCAACAAGAGCCAG 
CAGGATGCCTTCCTGCCCTATGTGGAAGACGGCACGCTGATCTTCATTGGCGCGACCACCGAGAACCCGTCC 
TTCGAGTTGAACAACGCGCTGCTCTCGCGGGCTCGCGTGTATGTCCTCAAGAGCCTCGACGAAGCCGCCCTG 
CGCAAGCTGGTGGGCCGCGCGCTGAACGAGGACAAGGGCCTCGGCAAGCGCAAGCTGAGCCTGCCGGAGGAG 
AGCTTCCAGGTTCTCCTGGCCGCCGCCGACGGCGATGGGCGGCGCCTGCTGAACCTGCTGGAGAACGCTGCC 
GACCTCGCCGAGGACGGCAGCGAGATCAGCCCCGAGCTGCTGCAGAATCTGCTCGGCGATACCCGCCGACGT 
TTCGACAAGGGCGGCGAGGCGTTCTACGACCAGATCAGCGCGCTGCACAAGTCGGTGCGCGGCTCCAATCCC 
GATGCGGCACTCTATTGGTTCGCGCGCATGCTCGACGGCGGCTGCGATCCCCTGTACATCGCCCGGCGGGTG 
GTGCGCATGGCCAGCGAGGAGGTTGGCAATGCTGATCCTCGCGCCCTCGGCCTGTGCCTGTCGGCCTGGGAC 
GTGCAGGAGCGCCTGGGCAGCCCCGAAGGCGAGCTGGCGGTGGCCCAGGCCATCGTCTACCTGGCCTGTGCG 
CCGAAGAGCAATGCGGTGTACAGCGCGTTCAACGCGGCGATGCGCGACGTCGCCGAAAGCGGCTCGCGGGAA 
GTGCCATTGCACTTGCGCAACGCGCCGACCAAATTGATGAAGAGCCTCGGCTATGGCGAGGAATACCGCTAC 
GCCCACGACGAGCCGGATGCCTATGCCGCCGGAGAGGATTATTTCCCCGAGGATCTGGAGCCGCGGCGTTAC 
TATCAACCGGTGCCGAGGGGCCTGGAACTGAAGATCCGCGACAAGCTGGAACACCTGGCCGAGCTGGATCGC 
ACCAGTCCCCGCCAACGCAGAAAATCCTGA