ViewGene
Locus Name:
GeneID:
Location:

GeneID:1187
TrivialName: PA14_48600
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48600
PAO1 Ortholog Locus:PA1215
Sequence Length:1287
Protein Length:428
Start: 4321135
Stop: 4322421
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04604.1|AE004551_8 (AE004551) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 426/428 (99%), Positives = 426/428 (99%)
Sequence:
GTGCTGCTGGACAACAGCTACCGCAACCTCTGCCTGATCTATGCGGTCATGCGCGCGGGCAAGCATCTGGTG
CTGATCGATCCCGAGTGGGGGGAGGCCGCGAAGCAGGCCATCGTCGACGAGATGCGCCTGGAAGCGCTGGCC
AGCGAACATCCGCTCGAGGGCGCGCTGGCCGGGCTGCGCCTGGCGCTGGACTTCGAGCGCAGCGCGACGCGC
CGGCTCGACCGCGCCGCGCACAGCCACATGATCCTGTTCACCTCGGGCACCACCGGCCAGCCGAAAGGCATC
GAACTCAGCCAGCAGGCCATGCTCCATGCCTACCGCATCGGCCGCGACTGCCTGGGCATCGGCGAGCACACG
CGCTCCGGTTGCTTCTACCGGATCAGCGGCCTGGGCATCCTCGGCATCAATTTCCTCTTCCCGCTGCTGTAC
GGCGGCAGCGCGGTGCTCCTGCCGCTGCACTGCTGGGCCGACAGCGAAGGCTTCTGGGAATACGTGGAACGC
TTCGGCATCAGTTTCCTCTACCTGGTGCCGCCGGTGGTCAACCACATGGTCAAGGAAGGCTCCCCGCCGCCG
CGCCGCTTGCCGTTGCAGCGCCTGCTCTGCGTCGCCGGCTCGGCGCGCCTGGACGCCGACCTGCAGGCGGCC
TTCCAGCGCGACTACGCGGCGCTGGCGAACATCTACGGCCTCAGCGAGTGCGGCTTCGCCTTCCTCTTCGGC
AAGCGTCGCGGCGACGCGTTCGACAACTCGGTGGGACCGGCCGTCGGCCTGGAACTCAAGCTGACCGACCCC
GACGGCCGCCCGCTGGAGGGCAGCGGCGAACGCGGGCGCCTGTGGGTGCGCACGCCGAGCCTGTTCTCCGGC
TACGTCAACCGCCCCGACCTGACCGCCCAGGTGCTCGAGGACGGCTGGCTGAACACCCAGGACCTCGCCTAC
TTCGACGAGGACCGCTGCGTGCACGTCCTCGGCCGTTGCGACGGCACCATCAACAAGGGCGGCAACCTGTTC
CACCTGAATGAATGCGAACGGGCGCTCAACGGCCTGGACGAGGTGATCGACGTCTGCTGCCTGAAGGTCGAC
TGCCCGCTCTATGGCGAAGACTATGTCGCCGTGATCCACACCGCGCCGCAGGTCGAGTTCGCCTTCCTGCCC
TGGCTCCAGCAGCAGCTCGGCACCCTCCGCGCGCCGCAGCGCGTAGTGCTGTCGCACCAGGCCCTGCCGCTG
AATGGCGCCGGCAAGCACGATCGCCGTGCGCTCGCCACGCTGCTGCAACGGGAAGCCTCGTGA
Translation:
MLLDNSYRNLCLIYAVMRAGKHLVLIDPEWGEAAKQAIVDEMRLEALASEHPLEGALAGLRLALDFERSATR
RLDRAAHSHMILFTSGTTGQPKGIELSQQAMLHAYRIGRDCLGIGEHTRSGCFYRISGLGILGINFLFPLLY
GGSAVLLPLHCWADSEGFWEYVERFGISFLYLVPPVVNHMVKEGSPPPRRLPLQRLLCVAGSARLDADLQAA
FQRDYAALANIYGLSECGFAFLFGKRRGDAFDNSVGPAVGLELKLTDPDGRPLEGSGERGRLWVRTPSLFSG
YVNRPDLTAQVLEDGWLNTQDLAYFDEDRCVHVLGRCDGTINKGGNLFHLNECERALNGLDEVIDVCCLKVD
CPLYGEDYVAVIHTAPQVEFAFLPWLQQQLGTLRAPQRVVLSHQALPLNGAGKHDRRALATLLQREAS*
AnnotationID:1196GeneID:1187
AnnotatorUID: diggins
Modification Date/Time: 2005-05-24 18:06:18
Gene Name:
Confidence Code:3
GeneProduct:putative AMP-binding enzyme
Cell Localization:()
Synonyms:PA1215
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0318,pfam00501
Secondary Functional Category(ies):fatty acid and phospholipid metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 
[Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 534 residues,  86.5% aligned
Score =  227 bits (580), Expect = 2e-60
Identities = 132/468 (28%), Positives = 196/468 (41%), Gaps = 47/468 (10%)

pfam00501, AMP-binding, AMP-binding enzyme.
CD-Length = 412 residues,  93.2% aligned
Score =  182 bits (464), Expect = 5e-47
Identities = 102/388 (26%), Positives = 163/388 (42%), Gaps = 36/388 (9%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14299




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19519




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37555




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1187_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1187
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2118
                           PA1215_tr
                           translation of PA1215
                           428
                           99.53
                           99.53
                           0
                           2249.0
     

     
     
70966
                           gb|AAG04604.1|AE004551_8
                           (AE004551) hypothetical protein PA1215 [Pseudomonas aeruginosa PAO1]
                           428
                           99.29
                           99.53
                           0
                           2246.0
     

     






      

          
GC ORFID: 44189How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1215Glimmer Score: 

          
Start: 632773Stop: 631487

          
Length: 1287


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1215 translation of PA1215Homolog Bit Score 870.0

          
Other Homologs:  t_PA1215 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCTGCTGGACAACAGCTACCGCAACCTCTGCCTGATCTATGCGGTCATGCGCGCGGGCAAGCATCTGGTG 
CTGATCGATCCCGAGTGGGGGGAGGCCGCGAAGCAGGCCATCGTCGACGAGATGCGCCTGGAAGCGCTGGCC 
AGCGAACATCCGCTCGAGGGCGCGCTGGCCGGGCTGCGCCTGGCGCTGGACTTCGAGCGCAGCGCGACGCGC 
CGGCTCGACCGCGCCGCGCACAGCCACATGATCCTGTTCACCTCGGGCACCACCGGCCAGCCGAAAGGCATC 
GAACTCAGCCAGCAGGCCATGCTCCATGCCTACCGCATCGGCCGCGACTGCCTGGGCATCGGCGAGCACACG 
CGCTCCGGTTGCTTCTACCGGATCAGCGGCCTGGGCATCCTCGGCATCAATTTCCTCTTCCCGCTGCTGTAC 
GGCGGCAGCGCGGTGCTCCTGCCGCTGCACTGCTGGGCCGACAGCGAAGGCTTCTGGGAATACGTGGAACGC 
TTCGGCATCAGTTTCCTCTACCTGGTGCCGCCGGTGGTCAACCACATGGTCAAGGAAGGCTCCCCGCCGCCG 
CGCCGCTTGCCGTTGCAGCGCCTGCTCTGCGTCGCCGGCTCGGCGCGCCTGGACGCCGACCTGCAGGCGGCC 
TTCCAGCGCGACTACGCGGCGCTGGCGAACATCTACGGCCTCAGCGAGTGCGGCTTCGCCTTCCTCTTCGGC 
AAGCGTCGCGGCGACGCGTTCGACAACTCGGTGGGACCGGCCGTCGGCCTGGAACTCAAGCTGACCGACCCC 
GACGGCCGCCCGCTGGAGGGCAGCGGCGAACGCGGGCGCCTGTGGGTGCGCACGCCGAGCCTGTTCTCCGGC 
TACGTCAACCGCCCCGACCTGACCGCCCAGGTGCTCGAGGACGGCTGGCTGAACACCCAGGACCTCGCCTAC 
TTCGACGAGGACCGCTGCGTGCACGTCCTCGGCCGTTGCGACGGCACCATCAACAAGGGCGGCAACCTGTTC 
CACCTGAATGAATGCGAACGGGCGCTCAACGGCCTGGACGAGGTGATCGACGTCTGCTGCCTGAAGGTCGAC 
TGCCCGCTCTATGGCGAAGACTATGTCGCCGTGATCCACACCGCGCCGCAGGTCGAGTTCGCCTTCCTGCCC 
TGGCTCCAGCAGCAGCTCGGCACCCTCCGCGCGCCGCAGCGCGTAGTGCTGTCGCACCAGGCCCTGCCGCTG 
AATGGCGCCGGCAAGCACGATCGCCGTGCGCTCGCCACGCTGCTGCAACGGGAAGCCTCGTGA