ViewGene
Locus Name:
GeneID:
Location:

GeneID:1186
TrivialName: PA14_04900
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04900
PAO1 Ortholog Locus:PA0373
Sequence Length:1356
Protein Length:451
Start: 432275
Stop: 433630
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03762.1|AE004475_4 (AE004475) signal recognition particle receptor FtsY [Pseudomonas aeruginosa PAO1]
Identities = 451/455 (99%), Positives = 451/455 (99%), Gaps = 4/455 (0%)
Sequence:
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGG
AAAAAGCCGCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAG
CAGCGCGCGCCTGCCGATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCC
GAGCCGGCCGAGCCGCCGGCGCCGGTTGCCGAAGCGCCGCTCGCCGGTGACGAGCCAGCGTCGGCCGAGGAG
CATTCGCCCCGCCCCGAGGCGCCCGTCGCACAACCCGAGCCTATCCTCGCTGCCGAGCCCGAGCCCGAGCCC
GAGCCCGAGCCCGAGCCCGTTGCGCCGCTGGCCGCCGCTCCGGCAGTCAGCGAGCCGGCGACCAGGCCGGGC
TTCTTCGCCCGCCTCCGGCAGGGACTGTCCAAGACCAGCGCCAGCATCGGCGAAGGCATGGCCAGCCTGTTC
CTCGGCCGCAAGGAAATCGACGACGACCTGCTCGACGACATCGAGACGCGCCTGCTGACCGCCGACGTCGGC
GTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCAAGCGCGTGGCGCGCAAGGAGCTGGCCGACAGCGGC
GCGCTGTACAAGGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAGCAGCCGTTGCAGGTCGAC
GTCGCGCGCGAGCCCTATGTGATCCTGGTGGTCGGGGTGAACGGCGTGGGCAAGACCACCACCATCGGCAAG
CTGGCGAAGAAGCTGCAACTCGAGGGCAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCC
GTGGAGCAGTTGCAGGTCTGGGGCGAGCGCAACCGCATCCCGGTGATCGCCCAGCACACCGGCGCCGACTCC
GCCTCGGTGATCTTCGACGCGGTGCAGGCCGCCAAGGCCCGCGGCATCGACGTGCTGATCGCCGATACCGCC
GGACGCCTGCATACCAAGGACAACCTGATGGAGGAGCTGAAGAAGGTGCGCCGGGTGATCGGCAAGCTGGAC
GAGACGGCGCCCCATGAGGTCCTGCTGGTGCTCGACGCCGGCACCGGGCAGAACGCCATCAACCAGGCCAAG
CAGTTCAACCTCGCGGTGGAGCTGACCGGCCTGGCCCTGACCAAACTGGACGGCACCGCCAAGGGCGGGGTG
ATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCGCTATATCGGTGTCGGCGAGGGGATCGACGATCTC
CGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCGCAGAGCGGGAGAACGCATGA
Translation:
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAA
EPAEPPAPVAEAPLAGDEPASAEEHSPRPEAPVAQPEPILAAEPEPEPEPEPEPVAPLAAAPAVSEPATRPG
FFARLRQGLSKTSASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSG
ALYKALQEELASLLRPVEQPLQVDVAREPYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAA
VEQLQVWGERNRIPVIAQHTGADSASVIFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLD
ETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDL
RTFEADAFVQALFAERENA*
AnnotationID:1195GeneID:1186
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 06:06:35
Gene Name:ftsY
Confidence Code:2
GeneProduct:signal recognition particle receptor FtsY
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:cell division protein
Functional Category Confidence Code:5
COGs:COG0552
Secondary Functional Category(ies):cell division
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70676.1|AE016711_4 (AE016793) signal recognition particle receptor FtsY [Pseudomonas
           putida KT2440]
          Length = 494

 Score =  599 bits (1545), Expect = e-170
 Identities = 344/495 (69%), Positives = 377/495 (76%), Gaps = 47/495 (9%)

>dbj|BAC61219.1| (AP005083) cell division protein FtsY [Vibrio parahaemolyticus]
          Length = 405

 Score =  434 bits (1117), Expect = e-121
 Identities = 234/435 (53%), Positives = 296/435 (68%), Gaps = 34/435 (7%)

>gb|AAC76489.1| (AE000422) cell division membrane protein [Escherichia coli K12]
          Length = 497

 Score =  429 bits (1103), Expect = e-119
 Identities = 248/453 (54%), Positives = 308/453 (67%), Gaps = 36/453 (7%)






 
Structural Features:
COG0552, FtsY, Signal recognition particle GTPase 
[Intracellular trafficking and secretion]
CD-Length = 340 residues,  99.4% aligned
Score =  418 bits (1075), Expect = 8e-118
Identities = 187/345 (54%), Positives = 245/345 (71%), Gaps = 13/345 (3%)








   
Genomic Context:






   
Comment:


















    ReferenceID:2375




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19517




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33715




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1186_cdd.html


    		




 
URL:

















    ReferenceID:35400




  
Author/Investigator(s):
        Gill DR, Salmond GP.





  
Title:
        The identification of the Escherichia coli ftsY gene product: an unusual protein.




  
PubMed:
        2161989


MedLine:
        




    
Source:
Mol Microbiol. 1990 Apr;4(4):575-83.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2161989

















    ReferenceID:35401




  
Author/Investigator(s):
        Gill DR, Salmond GP.





  
Title:
        The Escherichia coli cell division proteins FtsY, FtsE and FtsX are inner membrane-associated.




  
PubMed:
        3323846


MedLine:
        




    
Source:
Mol Gen Genet. 1987 Dec;210(3):504-8.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=3323846

















    ReferenceID:35402




  
Author/Investigator(s):
        Handfield M, Lehoux DE, Sanschagrin F, Mahan MJ, Woods DE, Levesque RC.





  
Title:
        In vivo-induced genes in Pseudomonas aeruginosa.




  
PubMed:
        10722644


MedLine:
        




    
Source:
Infect Immun. 2000 Apr;68(4):2359-62.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10722644









           
Homologs By Global Alignment 

           

       



     
Gene ID:1186
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2117
                           PA0373_tr
                           translation of PA0373
                           455
                           99.12
                           99.12
                           4
                           2253.0
     

     
     
70760
                           gb|AAG03762.1|AE004475_4
                           (AE004475) signal recognition particle receptor FtsY [Pseudomonas aeruginosa PAO1]
                           455
                           99.12
                           99.12
                           4
                           2253.0
     

     
     
70761
                           gb|AAN70676.1|AE016711_4
                           (AE016793) signal recognition particle receptor FtsY [Pseudomonas putida KT2440]
                           497
                           69.81
                           76.65
                           49
                           1586.0
     

     
     
70762
                           gb|AAO53971.1|
                           (AE016857) signal recognition particle-docking protein FtsY [Pseudomonas syringae pv. tomato str. DC3000]
                           517
                           65.95
                           72.53
                           70
                           1557.0
     

     
     
70766
                           emb|CAE16476.1|
                           (BX571872) cell division protein [Photorhabdus luminescens subsp. laumondii TTO1]
                           458
                           53.71
                           68.12
                           41
                           1128.0
     

     






      

          
GC ORFID: 44188How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0373Glimmer Score: 

          
Start: 6233617Stop: 6234972

          
Length: 1356


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0373 translation of PA0373Homolog Bit Score 871.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6606 (ORF: BLASTX 598.0), t_PA0373 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGG 
AAAAAGCCGCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAG 
CAGCGCGCGCCTGCCGATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCC 
GAGCCGGCCGAGCCGCCGGCGCCGGTTGCCGAAGCGCCGCTCGCCGGTGACGAGCCAGCGTCGGCCGAGGAG 
CATTCGCCCCGCCCCGAGGCGCCCGTCGCACAACCCGAGCCTATCCTCGCTGCCGAGCCCGAGCCCGAGCCC 
GAGCCCGAGCCCGAGCCCGTTGCGCCGCTGGCCGCCGCTCCGGCAGTCAGCGAGCCGGCGACCAGGCCGGGC 
TTCTTCGCCCGCCTCCGGCAGGGACTGTCCAAGACCAGCGCCAGCATCGGCGAAGGCATGGCCAGCCTGTTC 
CTCGGCCGCAAGGAAATCGACGACGACCTGCTCGACGACATCGAGACGCGCCTGCTGACCGCCGACGTCGGC 
GTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCAAGCGCGTGGCGCGCAAGGAGCTGGCCGACAGCGGC 
GCGCTGTACAAGGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAGCAGCCGTTGCAGGTCGAC 
GTCGCGCGCGAGCCCTATGTGATCCTGGTGGTCGGGGTGAACGGCGTGGGCAAGACCACCACCATCGGCAAG 
CTGGCGAAGAAGCTGCAACTCGAGGGCAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCC 
GTGGAGCAGTTGCAGGTCTGGGGCGAGCGCAACCGCATCCCGGTGATCGCCCAGCACACCGGCGCCGACTCC 
GCCTCGGTGATCTTCGACGCGGTGCAGGCCGCCAAGGCCCGCGGCATCGACGTGCTGATCGCCGATACCGCC 
GGACGCCTGCATACCAAGGACAACCTGATGGAGGAGCTGAAGAAGGTGCGCCGGGTGATCGGCAAGCTGGAC 
GAGACGGCGCCCCATGAGGTCCTGCTGGTGCTCGACGCCGGCACCGGGCAGAACGCCATCAACCAGGCCAAG 
CAGTTCAACCTCGCGGTGGAGCTGACCGGCCTGGCCCTGACCAAACTGGACGGCACCGCCAAGGGCGGGGTG 
ATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCGCTATATCGGTGTCGGCGAGGGGATCGACGATCTC 
CGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCGCAGAGCGGGAGAACGCATGA