ViewGene
Locus Name:
GeneID:
Location:

GeneID:1185
TrivialName: PA14_63920
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63920
PAO1 Ortholog Locus:PA4835
Sequence Length:1302
Protein Length:433
Start: 5697539
Stop: 5696238
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08220.1|AE004896_10 (AE004896) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 432/433 (99%), Positives = 433/433 (100%)
Sequence:
ATGAACGCCGCTGATGAGAGCCTGGGCAACGTCCTGCTGGTCGGTCTGGGCGCGGTGGCGATCCAGGTCGCG
CTGGACCTGCGCCGCCACGGTGCCGGTCGCCTCGGCGCGCTGAACCATCCCGGCCGGCGCAGCCAGCGGATC
GCCGAGGCCCTGGCGCGCGGCGCCTGCCTGCAATTGGAAGGGCAGGGGCAGCATCGCTGGCTGTCCGGCAAC
GCCGCGTTGGACGTCTTCCACCAGGACCCCGCTGAACTTCGCGACGATTGGCAGACCCTGGTGCTCTGCGTG
CCGGCCGACAGTTACCTGGACGTGGTCCGCGGGTTGCCCTGGGAGCGACTCGGCGGGGTGCGCACGCTGCTG
CTGGTGTCCGCCTTCATCGGCGCCAACCTGCTGGTGCGCAGCGCCCTGCCGGCGGGGTGCCAGGCGACCGTG
CTGAGCCTGTCCAGCTACTACGCGGCGACCAAGGTGATCGACGAGACACAACCGCTGCGGGCCCTGACCAAG
GCGGTCAAGCGCAGGGTCTACCTGGGTTCCAGCCGGCCGGACTGCCCGGCGCGGGAGACCTGGCGGCGAGTC
CTGGCCGGCAGCGGGGTGGAGGTGGTACCCCTGGCGACGCCGGAAGCGGCGGAGGGCCGCAACGTCACCACC
TACGTGCACAGTCCGTTCTTTCTCGGCGAGTTCGCCCTCGCCCGGATACTTTCCGAGCAGGGGCCGCCCGGT
TTCATGTACAAGCTCTACCCGGAGGGACCTATCACCCCCGGGGCAATCGGCGCCATGCGGCGGCTGTGGTGC
GAGCTGAGCGAACTGTTGCGGCGGATGGGCGCCGAGCCGCTGAACCTGCTGCGGTTCCTCAACGACGACAAC
TACCCGGTGCACGAGACGATGCTGCCGCGCGCGGCCATCGACGGCTTCGCCGAGGCTGGCGCCGAGCGCCAG
GAATACCTGCTGTTCGTGCGCTACGCGGCGTTGCTGGTCGATCCGTTCTCTCCGGCCGACGAGCAGGGTCGC
CACTTCGACTTTTCCGCCGTGCCGTTCCGCCGCGTCAGTCGCGACGAGGATGGACTCTGGCGGCTCCCGCGG
GTGCCGCTGGAGGACTACCGCAAGCTGGCGCTGATCGTCGCGCTGGCCGCCCACTTCGACCTGGCCATGCCG
CAGGCGCGCAGCCTGCTGGCGAGCTACGAGAACGCCGTGTCCCGATTCATCGATTGCCAAGGAGCGAGCCAG
TGCCATCCAAGCCTGTATCCGATCGACAGCCGTCCGGCGGCGGACGCCATCTATCGCCAGTGGTGCTCGACC
TGCTGA
Translation:
MNAADESLGNVLLVGLGAVAIQVALDLRRHGAGRLGALNHPGRRSQRIAEALARGACLQLEGQGQHRWLSGN
AALDVFHQDPAELRDDWQTLVLCVPADSYLDVVRGLPWERLGGVRTLLLVSAFIGANLLVRSALPAGCQATV
LSLSSYYAATKVIDETQPLRALTKAVKRRVYLGSSRPDCPARETWRRVLAGSGVEVVPLATPEAAEGRNVTT
YVHSPFFLGEFALARILSEQGPPGFMYKLYPEGPITPGAIGAMRRLWCELSELLRRMGAEPLNLLRFLNDDN
YPVHETMLPRAAIDGFAEAGAERQEYLLFVRYAALLVDPFSPADEQGRHFDFSAVPFRRVSRDEDGLWRLPR
VPLEDYRKLALIVALAAHFDLAMPQARSLLASYENAVSRFIDCQGASQCHPSLYPIDSRPAADAIYRQWCST
C*
AnnotationID:1194GeneID:1185
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 07:07:38
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4835
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:2373




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19515




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35210




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1185_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1185
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2116
                           PA4835_tr
                           translation of PA4835
                           433
                           99.76
                           99.99
                           0
                           2250.0
     

     
     
70757
                           gb|AAG08220.1|AE004896_10
                           (AE004896) hypothetical protein PA4835 [Pseudomonas aeruginosa PAO1]
                           433
                           99.76
                           99.99
                           0
                           2250.0
     

     
     
70759
                           emb|CAC90176.1|
                           (AJ414147) putative exported protein [Yersinia pestis CO92]
                           463
                           38.87
                           54.21
                           37
                           783.0
     

     
     
70758
                           gb|AAM86386.1|AE013886_11
                           (AE013886) hypothetical [Yersinia pestis KIM]
                           471
                           38.21
                           53.07
                           43
                           778.0
     

     






      

          
GC ORFID: 44187How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4835Glimmer Score: 

          
Start: 4961219Stop: 4959918

          
Length: 1302


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4835 translation of PA4835Homolog Bit Score 871.0

          
Other Homologs:  t_PA4835 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGCCGCTGATGAGAGCCTGGGCAACGTCCTGCTGGTCGGTCTGGGCGCGGTGGCGATCCAGGTCGCG 
CTGGACCTGCGCCGCCACGGTGCCGGTCGCCTCGGCGCGCTGAACCATCCCGGCCGGCGCAGCCAGCGGATC 
GCCGAGGCCCTGGCGCGCGGCGCCTGCCTGCAATTGGAAGGGCAGGGGCAGCATCGCTGGCTGTCCGGCAAC 
GCCGCGTTGGACGTCTTCCACCAGGACCCCGCTGAACTTCGCGACGATTGGCAGACCCTGGTGCTCTGCGTG 
CCGGCCGACAGTTACCTGGACGTGGTCCGCGGGTTGCCCTGGGAGCGACTCGGCGGGGTGCGCACGCTGCTG 
CTGGTGTCCGCCTTCATCGGCGCCAACCTGCTGGTGCGCAGCGCCCTGCCGGCGGGGTGCCAGGCGACCGTG 
CTGAGCCTGTCCAGCTACTACGCGGCGACCAAGGTGATCGACGAGACACAACCGCTGCGGGCCCTGACCAAG 
GCGGTCAAGCGCAGGGTCTACCTGGGTTCCAGCCGGCCGGACTGCCCGGCGCGGGAGACCTGGCGGCGAGTC 
CTGGCCGGCAGCGGGGTGGAGGTGGTACCCCTGGCGACGCCGGAAGCGGCGGAGGGCCGCAACGTCACCACC 
TACGTGCACAGTCCGTTCTTTCTCGGCGAGTTCGCCCTCGCCCGGATACTTTCCGAGCAGGGGCCGCCCGGT 
TTCATGTACAAGCTCTACCCGGAGGGACCTATCACCCCCGGGGCAATCGGCGCCATGCGGCGGCTGTGGTGC 
GAGCTGAGCGAACTGTTGCGGCGGATGGGCGCCGAGCCGCTGAACCTGCTGCGGTTCCTCAACGACGACAAC 
TACCCGGTGCACGAGACGATGCTGCCGCGCGCGGCCATCGACGGCTTCGCCGAGGCTGGCGCCGAGCGCCAG 
GAATACCTGCTGTTCGTGCGCTACGCGGCGTTGCTGGTCGATCCGTTCTCTCCGGCCGACGAGCAGGGTCGC 
CACTTCGACTTTTCCGCCGTGCCGTTCCGCCGCGTCAGTCGCGACGAGGATGGACTCTGGCGGCTCCCGCGG 
GTGCCGCTGGAGGACTACCGCAAGCTGGCGCTGATCGTCGCGCTGGCCGCCCACTTCGACCTGGCCATGCCG 
CAGGCGCGCAGCCTGCTGGCGAGCTACGAGAACGCCGTGTCCCGATTCATCGATTGCCAAGGAGCGAGCCAG 
TGCCATCCAAGCCTGTATCCGATCGACAGCCGTCCGGCGGCGGACGCCATCTATCGCCAGTGGTGCTCGACC 
TGCTGA