ViewGene
Locus Name:
GeneID:
Location:

GeneID:1184
TrivialName: PA14_37570
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37570
PAO1 Ortholog Locus:PA2083
Sequence Length:1275
Protein Length:424
Start: 3344595
Stop: 3343321
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05471.1|AE004636_2 (AE004636) probable ring-hydroxylating dioxygenase subunit [Pseudomonas aeruginosa PAO1]
Identities = 422/424 (99%), Positives = 424/424 (100%)
Sequence:
GTGAGTGAATATATCGAGACCGACGACGCAAGTTACTTCCGGGTCAGGCGCCAGGCCTATGTTTCCGCGGAA
CTGCACCGGCGCGAACTGCACGAGATATTCGACGACAGCTGGCTGTATGCCGCCCACCTCAGCGAGCTGCGC
GAGCCCGGCGACTTCATCACCCGCGACGTCGGCGGGCGCAACCTGATCATCCAGCGTCGCGCCGATGGCGAG
CCGGCGGTCTACCTGAACGCCTGCGCGCACCGTGGGGCCAAGGTCTGCGCCGAGCGCCAGGGCAACAGCCAG
CGTTTCACCTGTCCCTACCATGGCTGGACCTACGACAGCCACGGCAGCCTGATCGGCCTGCCGGACAAGGCC
GCCTACCAGCACGCCGGGCAATGCCATCCGGAGCTGTCCCTGACACGGGTGAAACACGCGGTCTACCGCAAC
TTCCTGTTCATCCACTACGGCGCCCGGCAAGCGTCCCTGGAAACCTACCTGGGCCAGGCGAAGGACTACATC
GACCTGATCTGCGACCAGTCCGAGGCGGAACTGGAGATCATTCCCGGCGGCTTCGAGCATTCGATCAAGGCC
AACTGGAAGCTGCTCGCGGAAAACGGCGTGGACGCCTACCACCTGCCGTTCGCCCACAAGCGCTACCTGGAA
TACCTGAATAGCCTCGGCACCGATCCGGAGTCGCACAAGCGCCATGGCCGCGGCGAAGCGCTGGGCAACGGC
CACGCACTGATCATCAGCGGCCCGCCGTCCACCGGACGGCCGATCGCCTACTGGAGCCCGCTGTTCCCGGAA
GCGCTCAAGCCGTCCATCGCCGCCAAGTTCGAACGCCTGGTGGAACGCTTCGGGCAGGCGCGGGCGGAGGAC
ATCGCCCACACCAACAAAAGCCTGTTCATCTTTCCCAACCTGGTGATCAACGACATCCTCGGCCTGAACATC
CGCTCGTTCTTCCCGACCGCCGCCGATGAGGTCAGCGTCACCGTATGGGGCGCCGGCTTCGCCGATGAGACC
CGCGAGGAGCGGGCGGCGCGGATCAATGGGTTGATCTCGTTCATCGGCCCGGGCGGTTTCGGCACCCCCGAC
GACGTCGAGATCCTCGAATCCTGTCAGCGCGCCTACGCCCACGCCGCCCTCGGCTACAGCGATTTTTCCCGC
GGCATGGGGCCGGCAACCCGCCGCCACGTCGACGAGGAACAGAACCGCGGCTTCTGGCGCGAGTGGAGCCGC
CGGCTCGGGCAGCAGCCCGCCGCCCTGCGGCGTCTCGCCGTGGCCGTCTGA
Translation:
MSEYIETDDASYFRVRRQAYVSAELHRRELHEIFDDSWLYAAHLSELREPGDFITRDVGGRNLIIQRRADGE
PAVYLNACAHRGAKVCAERQGNSQRFTCPYHGWTYDSHGSLIGLPDKAAYQHAGQCHPELSLTRVKHAVYRN
FLFIHYGARQASLETYLGQAKDYIDLICDQSEAELEIIPGGFEHSIKANWKLLAENGVDAYHLPFAHKRYLE
YLNSLGTDPESHKRHGRGEALGNGHALIISGPPSTGRPIAYWSPLFPEALKPSIAAKFERLVERFGQARAED
IAHTNKSLFIFPNLVINDILGLNIRSFFPTAADEVSVTVWGAGFADETREERAARINGLISFIGPGGFGTPD
DVEILESCQRAYAHAALGYSDFSRGMGPATRRHVDEEQNRGFWREWSRRLGQQPAALRRLAVAV*
AnnotationID:1193GeneID:1184
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 07:07:35
Gene Name:
Confidence Code:3
GeneProduct:ring-hydroxylating dioxygenase, large terminal subunit
Cell Localization:()
Synonyms:PA2083
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4638,pfam00848
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAB62285.1| (U24215) p-cumate dioxygenase large subunit [Pseudomonas putida]
          Length = 434

 Score =  328 bits (840), Expect = 5e-89
 Identities = 172/418 (41%), Positives = 238/418 (56%), Gaps = 14/418 (3%)








 
Structural Features:
COG4638, HcaE, Phenylpropionate dioxygenase and related
ring-hydroxylating dioxygenases, large terminal subunit 
[Inorganic ion transport and metabolism]
CD-Length = 367 residues,  99.2% aligned
Score =  208 bits (530), Expect = 1e-54
Identities = 108/408 (26%), Positives = 142/408 (34%), Gaps = 46/408 (11%)

pfam00848, Ring_hydroxyl_A, Ring hydroxylating alpha subunit (catalytic domain). 
CD-Length = 270 residues,  99.6% aligned
Score =  146 bits (370), Expect = 5e-36
Identities = 74/274 (27%), Positives = 97/274 (35%), Gaps = 21/274 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14297




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19513




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32624




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1184_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1184
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2115
                           PA2083_tr
                           translation of PA2083
                           424
                           99.52
                           99.99
                           0
                           2251.0
     

     
     
70751
                           gb|AAG05471.1|AE004636_2
                           (AE004636) probable ring-hydroxylating dioxygenase subunit [Pseudomonas aeruginosa PAO1]
                           424
                           99.29
                           99.99
                           0
                           2248.0
     

     
     
70753
                           gb|AAB62285.1|
                           (U24215) p-cumate dioxygenase large subunit [Pseudomonas putida]
                           441
                           39.45
                           55.10
                           24
                           847.0
     

     
     
70754
                           dbj|BAB17771.1|
                           (AB042508) large terminal subunit of p-cumate dioxygenase [Pseudomonas putida]
                           441
                           39.45
                           55.10
                           24
                           847.0
     

     
     
70752
                           dbj|BAA82116.1|
                           (AB022919) PsbAb [Rhodopseudomonas palustris]
                           437
                           38.90
                           56.06
                           21
                           846.0
     

     






      

          
GC ORFID: 44186How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2083Glimmer Score: 

          
Start: 1609319Stop: 1610593

          
Length: 1275


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2083 translation of PA2083Homolog Bit Score 871.0

          
Other Homologs:  t_PA2083 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAGTGAATATATCGAGACCGACGACGCAAGTTACTTCCGGGTCAGGCGCCAGGCCTATGTTTCCGCGGAA 
CTGCACCGGCGCGAACTGCACGAGATATTCGACGACAGCTGGCTGTATGCCGCCCACCTCAGCGAGCTGCGC 
GAGCCCGGCGACTTCATCACCCGCGACGTCGGCGGGCGCAACCTGATCATCCAGCGTCGCGCCGATGGCGAG 
CCGGCGGTCTACCTGAACGCCTGCGCGCACCGTGGGGCCAAGGTCTGCGCCGAGCGCCAGGGCAACAGCCAG 
CGTTTCACCTGTCCCTACCATGGCTGGACCTACGACAGCCACGGCAGCCTGATCGGCCTGCCGGACAAGGCC 
GCCTACCAGCACGCCGGGCAATGCCATCCGGAGCTGTCCCTGACACGGGTGAAACACGCGGTCTACCGCAAC 
TTCCTGTTCATCCACTACGGCGCCCGGCAAGCGTCCCTGGAAACCTACCTGGGCCAGGCGAAGGACTACATC 
GACCTGATCTGCGACCAGTCCGAGGCGGAACTGGAGATCATTCCCGGCGGCTTCGAGCATTCGATCAAGGCC 
AACTGGAAGCTGCTCGCGGAAAACGGCGTGGACGCCTACCACCTGCCGTTCGCCCACAAGCGCTACCTGGAA 
TACCTGAATAGCCTCGGCACCGATCCGGAGTCGCACAAGCGCCATGGCCGCGGCGAAGCGCTGGGCAACGGC 
CACGCACTGATCATCAGCGGCCCGCCGTCCACCGGACGGCCGATCGCCTACTGGAGCCCGCTGTTCCCGGAA 
GCGCTCAAGCCGTCCATCGCCGCCAAGTTCGAACGCCTGGTGGAACGCTTCGGGCAGGCGCGGGCGGAGGAC 
ATCGCCCACACCAACAAAAGCCTGTTCATCTTTCCCAACCTGGTGATCAACGACATCCTCGGCCTGAACATC 
CGCTCGTTCTTCCCGACCGCCGCCGATGAGGTCAGCGTCACCGTATGGGGCGCCGGCTTCGCCGATGAGACC 
CGCGAGGAGCGGGCGGCGCGGATCAATGGGTTGATCTCGTTCATCGGCCCGGGCGGTTTCGGCACCCCCGAC 
GACGTCGAGATCCTCGAATCCTGTCAGCGCGCCTACGCCCACGCCGCCCTCGGCTACAGCGATTTTTCCCGC 
GGCATGGGGCCGGCAACCCGCCGCCACGTCGACGAGGAACAGAACCGCGGCTTCTGGCGCGAGTGGAGCCGC 
CGGCTCGGGCAGCAGCCCGCCGCCCTGCGGCGTCTCGCCGTGGCCGTCTGA