ViewGene
Locus Name:
GeneID:
Location:

GeneID:1180
TrivialName: PA14_29740
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29740
PAO1 Ortholog Locus:PA2656
Sequence Length:1338
Protein Length:445
Start: 2574563
Stop: 2575900
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06044.1|AE004694_7 (AE004694) probable two-component sensor [Pseudomonas aeruginosa PAO1]
Identities = 443/445 (99%), Positives = 444/445 (99%)
Sequence:
ATGAGGTCGATCCAGCGGCGCTTGAGCGTCGGCCTGTTCGCGGTGCTGCTGGTGGTCGGGCTGGTCCTCGCG
CAGACCGGCCTGTGGCTGTTCGACCAGGGCCTGCGGCGCTATTTCGCCGGCAACCTGCGCGAGGAGGCGGAG
AACCTGCTGGTGGCCATGGTGCGCGGGCCGAACGGCATGCAACTGGACGAGCAACGCCTCAACCCGGCGTTC
CAGCGCCCGTATTCCGGGCGCTATTTCGTCATCGAGCTGGAAAAGGACACCTGGCGCTCACGCTCCCTGTGG
GACAGCGAGCTGGAGGTGCCGCACAAGAAAGGGCTGGTGCAGGGCCTGGTCGATGGGCCCGAGGAGCAGCGA
CTGCTGGTGTTCCGCGGCCACTACAAGCGCATGGGCCAGAAGCTGCGGATCGTGGTGGCGCAGGACTATACG
CCGATCCTGGAAAGCTTCGCCCGCGTGCAGTGGATGGGTCTGGGCGCCGGCGCCCTGGCGCTGCTCCTGGTA
TTGCTGTTGCAGCGCCTGACCGTGCGTCGTTCGCTGCGTCCGCTGGAGGAGGTGCGCCTGCAGATCGCCCAG
CTGCAGCAGGGTCAGCGCAGCCAACTGGACAACCAGGCTCCCGAGGAGCTGGAGCCGCTGGTGGAGCAGATC
AACCACCTGCTGGCACACACCGAGGAGACCCTGAAGCGTTCGCGCAACGCCCTGGGCAACCTCGGTCACGCC
CTGAAGACGCCGCTGGCGGTGCTGGTCAGCCTCGCCGAGCGCGAGGAGATGGCGCGCCAGCCGGAGTTGCAA
CAGGTCCTGCGCGAGCAGCTGGAACAGATCCAGCAGCGCCTCGGTCGCGAGTTGGGCAAGGCGCGCCTGGTC
GGCGAAGCGCTGCCTGGCGCACATTTCGATTGCGCCGAGGAGTTGCCGTCGCTGTGCGACACCCTGCGCCTG
ATCCACGGCCCGCACCTGCAGGTGAGCTGGAGCGCGCCACCGGGGCTGCGCCTGCCATGGGACCGCGAGGAC
CTGCTGGAGATGCTCGGCAATCTGCTGGACAACGCCTGCAAGTGGGCCGATAGCGAAGtccgcCTGACTGTC
GCGCAGGGCGAGGGCATGGTCCGCCTGAaGGTCGACGATGACGGCCCCGGCATCCTCCCCGACCAGCGCCAG
GCGGTGCTCGAGCGGGGTACCCGGCTCGACGAGCAGGTCAGCGGCCATGGCCTGGGCCTGGGCATCGCGCGC
GACATCGCCGAGGCCTGCGGTGGCCGCCTGAGTCTCGAAGACAGCCCGCTGGGCGGCCTGCGAGTGAGCATC
GAGTTGTCGTTGCAGAAGAGCGGCCGCGCCGCCAGGGCTTAA
Translation:
MRSIQRRLSVGLFAVLLVVGLVLAQTGLWLFDQGLRRYFAGNLREEAENLLVAMVRGPNGMQLDEQRLNPAF
QRPYSGRYFVIELEKDTWRSRSLWDSELEVPHKKGLVQGLVDGPEEQRLLVFRGHYKRMGQKLRIVVAQDYT
PILESFARVQWMGLGAGALALLLVLLLQRLTVRRSLRPLEEVRLQIAQLQQGQRSQLDNQAPEELEPLVEQI
NHLLAHTEETLKRSRNALGNLGHALKTPLAVLVSLAEREEMARQPELQQVLREQLEQIQQRLGRELGKARLV
GEALPGAHFDCAEELPSLCDTLRLIHGPHLQVSWSAPPGLRLPWDREDLLEMLGNLLDNACKWADSEVRLTV
AQGEGMVRLKVDDDGPGILPDQRQAVLERGTRLDEQVSGHGLGLGIARDIAEACGGRLSLEDSPLGGLRVSI
ELSLQKSGRAARA*
AnnotationID:1189GeneID:1180
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 17:05:22
Gene Name:
Confidence Code:3
GeneProduct:putative two-component sensor
Cell Localization:()
Synonyms:PA2656
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:putative sensor histidine kinase
Functional Category Confidence Code:5
COGs:COG0642
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67961.1|AE016428_9 (AE016782) sensor histidine kinase [Pseudomonas putida KT2440]
          Length = 439

 Score =  558 bits (1439), Expect = e-158
 Identities = 282/434 (64%), Positives = 343/434 (79%)

>gb|AAO56858.1| (AE016868) sensor histidine kinase [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 439

 Score =  532 bits (1371), Expect = e-150
 Identities = 276/434 (63%), Positives = 331/434 (76%), Gaps = 1/434 (0%)








 
Structural Features:
COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]
CD-Length = 336 residues,  94.0% aligned
Score =  121 bits (303), Expect = 2e-28
Identities = 88/316 (27%), Positives = 144/316 (45%), Gaps = 9/316 (2%)







   
Genomic Context:






   
Comment:


















    ReferenceID:2363




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19505




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36355




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1180_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1180
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2111
                           PA2656_tr
                           translation of PA2656
                           445
                           99.55
                           99.77
                           0
                           2254.0
     

     
     
70691
                           gb|AAG06044.1|AE004694_7
                           (AE004694) probable two-component sensor [Pseudomonas aeruginosa PAO1]
                           445
                           99.55
                           99.77
                           0
                           2254.0
     

     
     
70692
                           gb|AAN67961.1|AE016428_9
                           (AE016782) sensor histidine kinase [Pseudomonas putida KT2440]
                           445
                           64.04
                           77.75
                           6
                           1439.0
     

     
     
70693
                           gb|AAO56858.1|
                           (AE016868) sensor histidine kinase [Pseudomonas syringae pv. tomato str. DC3000]
                           445
                           62.02
                           74.83
                           6
                           1368.0
     

     






      

          
GC ORFID: 44182How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2656Glimmer Score: 

          
Start: 2379363Stop: 2378026

          
Length: 1338


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA2656 translation of PA2656Homolog Bit Score 872.0

          
Other Homologs:  psyr_15may02_Scaffold17_revised_gene2790 (ORF: BLASTX 530.0), t_PA2656 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGGTCGATCCAGCGGCGCTTGAGCGTCGGCCTGTTCGCGGTGCTGCTGGTGGTCGGGCTGGTCCTCGCG 
CAGACCGGCCTGTGGCTGTTCGACCAGGGCCTGCGGCGCTATTTCGCCGGCAACCTGCGCGAGGAGGCGGAG 
AACCTGCTGGTGGCCATGGTGCGCGGGCCGAACGGCATGCAACTGGACGAGCAACGCCTCAACCCGGCGTTC 
CAGCGCCCGTATTCCGGGCGCTATTTCGTCATCGAGCTGGAAAAGGACACCTGGCGCTCACGCTCCCTGTGG 
GACAGCGAGCTGGAGGTGCCGCACAAGAAAGGGCTGGTGCAGGGCCTGGTCGATGGGCCCGAGGAGCAGCGA 
CTGCTGGTGTTCCGCGGCCACTACAAGCGCATGGGCCAGAAGCTGCGGATCGTGGTGGCGCAGGACTATACG 
CCGATCCTGGAAAGCTTCGCCCGCGTGCAGTGGATGGGTCTGGGCGCCGGCGCCCTGGCGCTGCTCCTGGTA 
TTGCTGTTGCAGCGCCTGACCGTGCGTCGTTCGCTGCGTCCGCTGGAGGAGGTGCGCCTGCAGATCGCCCAG 
CTGCAGCAGGGTCAGCGCAGCCAACTGGACAACCAGGCTCCCGAGGAGCTGGAGCCGCTGGTGGAGCAGATC 
AACCACCTGCTGGCACACACCGAGGAGACCCTGAAGCGTTCGCGCAACGCCCTGGGCAACCTCGGTCACGCC 
CTGAAGACGCCGCTGGCGGTGCTGGTCAGCCTCGCCGAGCGCGAGGAGATGGCGCGCCAGCCGGAGTTGCAA 
CAGGTCCTGCGCGAGCAGCTGGAACAGATCCAGCAGCGCCTCGGTCGCGAGTTGGGCAAGGCGCGCCTGGTC 
GGCGAAGCGCTGCCTGGCGCACATTTCGATTGCGCCGAGGAGTTGCCGTCGCTGTGCGACACCCTGCGCCTG 
ATCCACGGCCCGCACCTGCAGGTGAGCTGGAGCGCGCCACCGGGGCTGCGCCTGCCATGGGACCGCGAGGAC 
CTGCTGGAGATGCTCGGCAATCTGCTGGACAACGCCTGCAAGTGGGCCGATAGCGAAGtccgcCTGACTGTC 
GCGCAGGGCGAGGGCATGGTCCGCCTGAaGGTCGACGATGACGGCCCCGGCATCCTCCCCGACCAGCGCCAG 
GCGGTGCTCGAGCGGGGTACCCGGCTCGACGAGCAGGTCAGCGGCCATGGCCTGGGCCTGGGCATCGCGCGC 
GACATCGCCGAGGCCTGCGGTGGCCGCCTGAGTCTCGAAGACAGCCCGCTGGGCGGCCTGCGAGTGAGCATC 
GAGTTGTCGTTGCAGAAGAGCGGCCGCGCCGCCAGGGCTTAA