ViewGene

Locus Name:
GeneID:
Location:

GeneID: 118

TrivialName: PA14_41810

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_41810

PAO1 Ortholog Locus: PA1759

Sequence Length: 2706

Protein Length: 901

Start: 3735857

Stop: 3733152

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05148.1|AE004601_13 (AE004601) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] Identities = 901/901 (100%), Positives = 901/901 (100%)

Sequence:

GTGGATGCAGTACAGGATCCAGCAGCCGGCAGCCTTTCGCGCTCCAGAATAGTGCCGCCTCAGGTGCCAGCC
GAATATTCTCTTCGCCCCGCGATCCGCAACCTGCTGGATCGCAATCCCCATTCACGCGTTCTGATGTTTTCC
GCACCTGCCGGCTTCGGCAAGACCTGCGCGCTCGCCGCCCTGGCCAGGGAGCGCACTGTAGCAGACCAGGCG
GTGGCCTGGCTGTCGCTGGCCGAAGAAGACGACGACCCCGCCCGTTTCTGCCGGCAGCTGATCGAGGCGTTG
GGCGAAGCCGTGCCGCAGCTTGGCGACGACGCCCAGACCTACCTGCAGAACACCATGCGGGTCCCGGTGGTG
GCGGTGATCGAAAGCCTGCTCGGCGATCTCGATCGCTATGCGCGGCCGTTGCTGCTGGTGCTGGACGACCTG
CACCTGGTTAGCAACCCGGACATCTTCACCGGCCTCAACCGCCTGGTGCAGTACGCACCGCCCGGGCTGGTC
CTGGCCCTGGGCACGCGTTCGCAGCCGGCGCTGAGCCTGGCTACCTGGCGGGCCAAGGGACTGTTGCTGGAA
ATCGGCCTCGAGGAGCTGCGCCTCGGCTTCGAGGAAACCCGCGAATACCTCGAACGCAGCGGTCTCTATCTG
GACGAGCCCTGCCTGAAGGCGCTCTATGGCCAGACCGAAGGCTGGGTGGTGGGCGTGCATCTCGTCAGCCTG
TGGCTGCGCCAGCAACCGCAGGTGCAGGAAATGGCCCTGCTCGACGGCGACAAGCAGGCGGTCAGCGCCTAT
CTGCTGGCGGCGGTCTTCGAACGCTTGCCTGGCGACCTGCAGGAAGCGCTGCTGGCCCTTGGCGTTGCCAGC
CAATTGAGCGGCGACCTGGCCAACGCCCTGACCGGGCGCCAGGACGGCCAGGCGCTGCTGGAGCGCCTGGAG
TCCATGCAATTGTTCCTCCTGCCGCTGGATCGCGAACGCCAGTGGTATCGCTTCCACCTGCTGTTCGCCGAC
TTCCTCCGCAACCGCCTGCGCGACTCCGATCCGGACCGTTTCAAGCAACTGCATTTCAACGCCAGCCTGTGG
TTCACCAACCACCACATGCCGACGTTCGCCATCGAGCATGCCTGTGCGGCGGAAGACCCGGAGATGATCGCC
GCGCTGGTCGACGGATGCGGACTGGAGCTGATCAACCGCGGCCAGCTCAGCCTGATCTACCGTTGGCGCAAG
CATGTGCCGGACGAAATCGCCGAGCGCTATCCGATCCTGGTCCTTACCGATGTCTGGTCGCGGGCCAGCGAC
CTCAGCCTGGGCGAGGCCAACCGGATCATCGACGAACTGCTGGCGCGCTGGGGGGAGAGCCGCGGCGACGGG
CCGATGGGCGACCAGTACCTCTCCGCGCTGGCGGTGAAGGCGGTGGTGGCGTTGCAGAAGGACGATCTGGAA
CTGTGCATCGCCCTGGCTCGCCGGGTCGAGGTCCAGCTCGGGCAGAACGCTGCCTTCCTCGAAGTGGCGGTG
TTGATCACCGCCGCGCTGGCCCAGGTGGTCCGTGGCCAGGGCGACCAGGCGCGGCGCCTGCTGGGATTGGCG
CAGCAGCGCAATCATTTCCTCGAAGGGCGCTACCTGGACATGCAACTGGCCAACGTCGAGGTGATCCTCGCA
CTTGAGCAGGGCCAGGTGAAGCAGGCGCAACTGCTCATCGAGCGGCTCCGCCAGCGTGCCCGGCCGCTGTTC
GAGAAGTCCAGGAGCGCGCTGGCGCTGCCGACCATCACCGAGGCCCTGACCGCCTACTACAGGATCGAGCTG
GACGGGCTGGAAGAGCGCCTGGGCTGGGCGCTCGGGCATGTGGATGTGATCAATCCGATCGATTTCTATGCC
CAGGGGCAGATCTGCCTGGCGCGCACCCAGCGCCTGCTGGGACGGCCGAAGGAGGCGCTGGCCAGCCTGGCG
GCGATGCAGGCCCTGGCCTCGCGCAATCAGTCGTGGCGCTTCTTCGCCCAGGCCATGGCCGAAGAGATCAAC
CTGATCCTCCAGGACAGCGGCCCCGACCGCCTGAAGCGCGCCGAGCAGCGGTTGAAGAGCGTGGACTGGAAC
AAGATGGCGGCACACTACCGCAACATGGCCTTCAACCCGGTCAACTGGTCGCTGGGCGTGAGCCGCGTGCGC
CTGTTGCAGGGGCGAGGACATTTCAGCGAGGCGCTGCACGAGATCACTCAGTTGCGCGGCACCTTGCAGCCC
GGTTGGCACGGCCTGCAGCGCCTGCGCCTGGATATCCTGGCGGCGCTCAGCTATCAGCGCCTGGGCTACCAG
GAACGGGCCAACAGCCTGCTCGGCGAATGCCTGATCAATGCCGAACGGGAAGGGGTGCGCAGCCTCTTCATC
GAGGAAGGCGACGGCATTCGCCAGTTGCTCCAGCAACTCGAATCCACCGAGCGCCAGCCGGCGCTACAGACC
TTCATTCGCGGCCTGCTCGGCATCTGGCCCGGGCAGGGCGTGCGCAAGCCCCAGGATGCGCTCGAGGAAGGC
CTGACGGAGCGCGAGCGCGAAGTGGTCTGCCTGGCCGCACAGGGCCTATCCAACGAAGAAATCGGCCAGCGC
CTGTCGCTGGCCCTGGGGACCGTCAAATGGCATCTGCACAACATCTACGAAAAGCTCAAGGTGCGCAATCGC
ACCCAGGCGATCCGGCGAGCCCGCGAGCTGAGCCTGCTCTGA

Translation:

MDAVQDPAAGSLSRSRIVPPQVPAEYSLRPAIRNLLDRNPHSRVLMFSAPAGFGKTCALAALARERTVADQA
VAWLSLAEEDDDPARFCRQLIEALGEAVPQLGDDAQTYLQNTMRVPVVAVIESLLGDLDRYARPLLLVLDDL
HLVSNPDIFTGLNRLVQYAPPGLVLALGTRSQPALSLATWRAKGLLLEIGLEELRLGFEETREYLERSGLYL
DEPCLKALYGQTEGWVVGVHLVSLWLRQQPQVQEMALLDGDKQAVSAYLLAAVFERLPGDLQEALLALGVAS
QLSGDLANALTGRQDGQALLERLESMQLFLLPLDRERQWYRFHLLFADFLRNRLRDSDPDRFKQLHFNASLW
FTNHHMPTFAIEHACAAEDPEMIAALVDGCGLELINRGQLSLIYRWRKHVPDEIAERYPILVLTDVWSRASD
LSLGEANRIIDELLARWGESRGDGPMGDQYLSALAVKAVVALQKDDLELCIALARRVEVQLGQNAAFLEVAV
LITAALAQVVRGQGDQARRLLGLAQQRNHFLEGRYLDMQLANVEVILALEQGQVKQAQLLIERLRQRARPLF
EKSRSALALPTITEALTAYYRIELDGLEERLGWALGHVDVINPIDFYAQGQICLARTQRLLGRPKEALASLA
AMQALASRNQSWRFFAQAMAEEINLILQDSGPDRLKRAEQRLKSVDWNKMAAHYRNMAFNPVNWSLGVSRVR
LLQGRGHFSEALHEITQLRGTLQPGWHGLQRLRLDILAALSYQRLGYQERANSLLGECLINAEREGVRSLFI
EEGDGIRQLLQQLESTERQPALQTFIRGLLGIWPGQGVRKPQDALEEGLTEREREVVCLAAQGLSNEEIGQR
LSLALGTVKWHLHNIYEKLKVRNRTQAIRRARELSLL*

AnnotationID:128 GeneID:118

AnnotatorUID: diggins

Modification Date/Time: 2005-03-01 07:07:46

Gene Name:

Confidence Code: 3

GeneProduct: putative transcriptional regulator

Cell Localization: ()

Synonyms: PA1759

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (25) Transcriptional regulators

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG2909

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

COG2909, MalT, ATP-dependent transcriptional regulator [Transcription]
CD-Length = 894 residues,  99.8% aligned
Score =  846 bits (2186), Expect = 0.0
Identities = 344/904 (38%), Positives = 468/904 (51%), Gaps = 20/904 (2%)

Genomic Context:

Comment:

ReferenceID:14057

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17381

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:38053

Author/Investigator(s):

Title:

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 2909_cdd.html

URL:

Homologs By Global Alignment

Gene ID:118

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

223 PA1759_tr translation of PA1759 901 99.99 99.99 0 4574.0

16743 gb|AAG05148.1|AE004601_13 (AE004601) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 901 99.88 99.99 0 4571.0

GC ORFID: `43120`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA1759`	Glimmer Score:
Start: `1218052`	Stop: `1220757`
Length: `2706`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA1759 translation of PA1759`	Homolog Bit Score `1766.0`
Other Homologs: `t_PA1759 (ORF: GLIMMER)`
GC ORF Sequence
GTGGATGCAGTACAGGATCCAGCAGCCGGCAGCCTTTCGCGCTCCAGAATAGTGCCGCCTCAGGTGCCAGCC GAATATTCTCTTCGCCCCGCGATCCGCAACCTGCTGGATCGCAATCCCCATTCACGCGTTCTGATGTTTTCC GCACCTGCCGGCTTCGGCAAGACCTGCGCGCTCGCCGCCCTGGCCAGGGAGCGCACTGTAGCAGACCAGGCG GTGGCCTGGCTGTCGCTGGCCGAAGAAGACGACGACCCCGCCCGTTTCTGCCGGCAGCTGATCGAGGCGTTG GGCGAAGCCGTGCCGCAGCTTGGCGACGACGCCCAGACCTACCTGCAGAACACCATGCGGGTCCCGGTGGTG GCGGTGATCGAAAGCCTGCTCGGCGATCTCGATCGCTATGCGCGGCCGTTGCTGCTGGTGCTGGACGACCTG CACCTGGTTAGCAACCCGGACATCTTCACCGGCCTCAACCGCCTGGTGCAGTACGCACCGCCCGGGCTGGTC CTGGCCCTGGGCACGCGTTCGCAGCCGGCGCTGAGCCTGGCTACCTGGCGGGCCAAGGGACTGTTGCTGGAA ATCGGCCTCGAGGAGCTGCGCCTCGGCTTCGAGGAAACCCGCGAATACCTCGAACGCAGCGGTCTCTATCTG GACGAGCCCTGCCTGAAGGCGCTCTATGGCCAGACCGAAGGCTGGGTGGTGGGCGTGCATCTCGTCAGCCTG TGGCTGCGCCAGCAACCGCAGGTGCAGGAAATGGCCCTGCTCGACGGCGACAAGCAGGCGGTCAGCGCCTAT CTGCTGGCGGCGGTCTTCGAACGCTTGCCTGGCGACCTGCAGGAAGCGCTGCTGGCCCTTGGCGTTGCCAGC CAATTGAGCGGCGACCTGGCCAACGCCCTGACCGGGCGCCAGGACGGCCAGGCGCTGCTGGAGCGCCTGGAG TCCATGCAATTGTTCCTCCTGCCGCTGGATCGCGAACGCCAGTGGTATCGCTTCCACCTGCTGTTCGCCGAC TTCCTCCGCAACCGCCTGCGCGACTCCGATCCGGACCGTTTCAAGCAACTGCATTTCAACGCCAGCCTGTGG TTCACCAACCACCACATGCCGACGTTCGCCATCGAGCATGCCTGTGCGGCGGAAGACCCGGAGATGATCGCC GCGCTGGTCGACGGATGCGGACTGGAGCTGATCAACCGCGGCCAGCTCAGCCTGATCTACCGTTGGCGCAAG CATGTGCCGGACGAAATCGCCGAGCGCTATCCGATCCTGGTCCTTACCGATGTCTGGTCGCGGGCCAGCGAC CTCAGCCTGGGCGAGGCCAACCGGATCATCGACGAACTGCTGGCGCGCTGGGGGGAGAGCCGCGGCGACGGG CCGATGGGCGACCAGTACCTCTCCGCGCTGGCGGTGAAGGCGGTGGTGGCGTTGCAGAAGGACGATCTGGAA CTGTGCATCGCCCTGGCTCGCCGGGTCGAGGTCCAGCTCGGGCAGAACGCTGCCTTCCTCGAAGTGGCGGTG TTGATCACCGCCGCGCTGGCCCAGGTGGTCCGTGGCCAGGGCGACCAGGCGCGGCGCCTGCTGGGATTGGCG CAGCAGCGCAATCATTTCCTCGAAGGGCGCTACCTGGACATGCAACTGGCCAACGTCGAGGTGATCCTCGCA CTTGAGCAGGGCCAGGTGAAGCAGGCGCAACTGCTCATCGAGCGGCTCCGCCAGCGTGCCCGGCCGCTGTTC GAGAAGTCCAGGAGCGCGCTGGCGCTGCCGACCATCACCGAGGCCCTGACCGCCTACTACAGGATCGAGCTG GACGGGCTGGAAGAGCGCCTGGGCTGGGCGCTCGGGCATGTGGATGTGATCAATCCGATCGATTTCTATGCC CAGGGGCAGATCTGCCTGGCGCGCACCCAGCGCCTGCTGGGACGGCCGAAGGAGGCGCTGGCCAGCCTGGCG GCGATGCAGGCCCTGGCCTCGCGCAATCAGTCGTGGCGCTTCTTCGCCCAGGCCATGGCCGAAGAGATCAAC CTGATCCTCCAGGACAGCGGCCCCGACCGCCTGAAGCGCGCCGAGCAGCGGTTGAAGAGCGTGGACTGGAAC AAGATGGCGGCACACTACCGCAACATGGCCTTCAACCCGGTCAACTGGTCGCTGGGCGTGAGCCGCGTGCGC CTGTTGCAGGGGCGAGGACATTTCAGCGAGGCGCTGCACGAGATCACTCAGTTGCGCGGCACCTTGCAGCCC GGTTGGCACGGCCTGCAGCGCCTGCGCCTGGATATCCTGGCGGCGCTCAGCTATCAGCGCCTGGGCTACCAG GAACGGGCCAACAGCCTGCTCGGCGAATGCCTGATCAATGCCGAACGGGAAGGGGTGCGCAGCCTCTTCATC GAGGAAGGCGACGGCATTCGCCAGTTGCTCCAGCAACTCGAATCCACCGAGCGCCAGCCGGCGCTACAGACC TTCATTCGCGGCCTGCTCGGCATCTGGCCCGGGCAGGGCGTGCGCAAGCCCCAGGATGCGCTCGAGGAAGGC CTGACGGAGCGCGAGCGCGAAGTGGTCTGCCTGGCCGCACAGGGCCTATCCAACGAAGAAATCGGCCAGCGC CTGTCGCTGGCCCTGGGGACCGTCAAATGGCATCTGCACAACATCTACGAAAAGCTCAAGGTGCGCAATCGC ACCCAGGCGATCCGGCGAGCCCGCGAGCTGAGCCTGCTCTGA