ViewGene
Locus Name:
GeneID:
Location:

GeneID:1179
TrivialName: PA14_44800
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44800
PAO1 Ortholog Locus:PA1519
Sequence Length:1350
Protein Length:449
Start: 3992783
Stop: 3994132
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04908.1|AE004580_8 (AE004580) probable transporter [Pseudomonas aeruginosa PAO1]
Identities = 449/449 (100%), Positives = 449/449 (100%)
Sequence:
GTGGAAAGCACCAAACAAGAAGAACAAGGGATCTACGCTGCGACACCGCCCGCCACCGGCCTGCTCGAACGC
CTGTTCAAGCTCCGCCAGCATGGTACGACGGTCAGGACCGAGCTGGCGGCCGGGCTGACCACCTTCATCACC
ATGGCCTACATCATCTTCGTCAATCCCAACATCATGGCCGACGCCGGCATCGACCACGGCGCGGCGTTCGTC
GCCACGTGCCTGGCGGCCGCCCTCGGCTGCTTCCTGATGGGCTTGTACGCCAACTGGCCGGTGGGCCTGGCG
CCGGGAATGGGGCTGAACGCCTTCTTCACCTACACCGTGGTCGGCACCATGGGCTACAGCTGGCAGATCGCC
CTCGGCGCGGTGTTCATCTCCGGGGTGATGTTCATGCTGCTGACCTTCTCCCGGGTCCGCGAATGGCTGCTC
AACAGCATCCCCCGCAGCCTCAGGTTCGCCATGGGCGCGGGTGTCGGCCTGTTCCTCGGCCTGATCGGCCTG
AAGACCGCCGGCATCGTAGTGGCCAGCCCGGCGACCCTGATCAAGCTCGGCCACCTCACCTCGCCCGGCCCG
CTGCTGGCGGCACTGTGCTTCCTGATGATCGCCGTGCTCGAGTACCGCCGGGTGTTCGGCGGCATCCTCATC
AGCATCCTCAGCGTCACCCTGGTCGGCTGGGCCCTCGGCCTGGTGCAGTACGGCGGGGTGTTCTCGGCGCCG
CCGAGCCTGGCGCCGACCTTCCTGGCGATGGACATCGCCGGCGCGTTCAACGTCACCATGATCAGCGTGATC
CTGGCCTTCCTCTTCGTGCACATGTTCGATACCGCCGGCACTCTCATGGGCGTCGCCCAGCGCGCGCACCTG
GTGAAGGAGGACGGACGTATCGAGAACCTGTCGAAGGCGATGAAGGCCGACAGCGCCTCCAGCGTGTTCGGC
GGCATGCTCGGTGTCCCGCCGGTGACCAGTTACGTGGAGAGCGCCGCGGGCGTGGCCGCCGGCGGACGTACC
GGGCTCACCGCGGTGGTGGTCGGCGTGCTGTTCGTCGCCGCGATGTTCTTCGCCCCGCTGGCCGGGATGATC
CCCGCCTTCGCCACCGCCGGCGCGCTGATCTACGTGGCCATGCTGATGATGGGCGGGATGGCGCACATCGAC
TGGGACGAGCACACCGAAACCATCCCGGCGATCGTCACGGTGATCATGATGCCGCTGACCTTCTCGGTGGCC
GACGGTATCGCCCTGGGCTTCATCACCTACGTCGCGATGAAGGTCCTCACCGGCAAGCACCGCGAAGTCTCG
GCCAGCCTCTATGCCTTGTTCGTGATCTTCGTCGCCAAGTTCATCTTCCTCTGA
Translation:
MESTKQEEQGIYAATPPATGLLERLFKLRQHGTTVRTELAAGLTTFITMAYIIFVNPNIMADAGIDHGAAFV
ATCLAAALGCFLMGLYANWPVGLAPGMGLNAFFTYTVVGTMGYSWQIALGAVFISGVMFMLLTFSRVREWLL
NSIPRSLRFAMGAGVGLFLGLIGLKTAGIVVASPATLIKLGHLTSPGPLLAALCFLMIAVLEYRRVFGGILI
SILSVTLVGWALGLVQYGGVFSAPPSLAPTFLAMDIAGAFNVTMISVILAFLFVHMFDTAGTLMGVAQRAHL
VKEDGRIENLSKAMKADSASSVFGGMLGVPPVTSYVESAAGVAAGGRTGLTAVVVGVLFVAAMFFAPLAGMI
PAFATAGALIYVAMLMMGGMAHIDWDEHTETIPAIVTVIMMPLTFSVADGIALGFITYVAMKVLTGKHREVS
ASLYALFVIFVAKFIFL*
AnnotationID:1188GeneID:1179
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 07:07:25
Gene Name:
Confidence Code:3
GeneProduct:putative transporter
Cell Localization:()
Synonyms:PA1519
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative permease
Functional Category Confidence Code:5
COGs:COG2252
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69864.1|AE016625_7 (AE016790) transporter, putative [Pseudomonas putida KT2440]
          Length = 449

 Score =  729 bits (1881), Expect = 0.0
 Identities = 365/449 (81%), Positives = 407/449 (90%)

>gb|AAN54190.1|AE015556_7 (AE015556) xanthine/uracil permease family protein [Shewanella
           oneidensis MR-1]
          Length = 429

 Score =  520 bits (1340), Expect = e-147
 Identities = 248/428 (57%), Positives = 335/428 (78%)

>gb|AAO58099.1| (AE016872) xanthine/uracil permease family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 431

 Score =  513 bits (1322), Expect = e-145
 Identities = 250/425 (58%), Positives = 333/425 (78%)






 
Structural Features:
COG2252, Permeases 
CD-Length = 436 residues,  99.1% aligned
Score =  444 bits (1143), Expect = 1e-125
Identities = 250/432 (57%), Positives = 331/432 (76%), Gaps = 2/432 (0%)







   
Genomic Context:






   
Comment:


















    ReferenceID:14295




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19503




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37333




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1179_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1179
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2109
                           PA1519_tr
                           translation of PA1519
                           449
                           99.99
                           99.99
                           0
                           2253.0
     

     
     
70600
                           gb|AAG04908.1|AE004580_8
                           (AE004580) probable transporter [Pseudomonas aeruginosa PAO1]
                           449
                           99.77
                           99.99
                           0
                           2250.0
     

     
     
70601
                           gb|AAN69864.1|AE016625_7
                           (AE016790) transporter, putative [Pseudomonas putida KT2440]
                           449
                           81.06
                           90.64
                           0
                           1877.0
     

     
     
70603
                           dbj|BAC58935.1|
                           (AP005075) conserved hypothetical protein [Vibrio parahaemolyticus]
                           449
                           57.01
                           74.61
                           20
                           1349.0
     

     
     
70602
                           gb|AAF95422.1|
                           (AE004299) conserved hypothetical protein [Vibrio cholerae O1 biovar eltor str. N16961]
                           450
                           56.88
                           74.66
                           21
                           1356.0
     

     






      

          
GC ORFID: 44181How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1519Glimmer Score: 

          
Start: 961126Stop: 959777

          
Length: 1350


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1519 translation of PA1519Homolog Bit Score 872.0

          
Other Homologs:  t_PA4719 (ORF: BLASTX 519.0), psyr_15may02_Scaffold4_revised_gene5656 (ORF: BLASTX 516.0), t_PA1519 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGAAAGCACCAAACAAGAAGAACAAGGGATCTACGCTGCGACACCGCCCGCCACCGGCCTGCTCGAACGC 
CTGTTCAAGCTCCGCCAGCATGGTACGACGGTCAGGACCGAGCTGGCGGCCGGGCTGACCACCTTCATCACC 
ATGGCCTACATCATCTTCGTCAATCCCAACATCATGGCCGACGCCGGCATCGACCACGGCGCGGCGTTCGTC 
GCCACGTGCCTGGCGGCCGCCCTCGGCTGCTTCCTGATGGGCTTGTACGCCAACTGGCCGGTGGGCCTGGCG 
CCGGGAATGGGGCTGAACGCCTTCTTCACCTACACCGTGGTCGGCACCATGGGCTACAGCTGGCAGATCGCC 
CTCGGCGCGGTGTTCATCTCCGGGGTGATGTTCATGCTGCTGACCTTCTCCCGGGTCCGCGAATGGCTGCTC 
AACAGCATCCCCCGCAGCCTCAGGTTCGCCATGGGCGCGGGTGTCGGCCTGTTCCTCGGCCTGATCGGCCTG 
AAGACCGCCGGCATCGTAGTGGCCAGCCCGGCGACCCTGATCAAGCTCGGCCACCTCACCTCGCCCGGCCCG 
CTGCTGGCGGCACTGTGCTTCCTGATGATCGCCGTGCTCGAGTACCGCCGGGTGTTCGGCGGCATCCTCATC 
AGCATCCTCAGCGTCACCCTGGTCGGCTGGGCCCTCGGCCTGGTGCAGTACGGCGGGGTGTTCTCGGCGCCG 
CCGAGCCTGGCGCCGACCTTCCTGGCGATGGACATCGCCGGCGCGTTCAACGTCACCATGATCAGCGTGATC 
CTGGCCTTCCTCTTCGTGCACATGTTCGATACCGCCGGCACTCTCATGGGCGTCGCCCAGCGCGCGCACCTG 
GTGAAGGAGGACGGACGTATCGAGAACCTGTCGAAGGCGATGAAGGCCGACAGCGCCTCCAGCGTGTTCGGC 
GGCATGCTCGGTGTCCCGCCGGTGACCAGTTACGTGGAGAGCGCCGCGGGCGTGGCCGCCGGCGGACGTACC 
GGGCTCACCGCGGTGGTGGTCGGCGTGCTGTTCGTCGCCGCGATGTTCTTCGCCCCGCTGGCCGGGATGATC 
CCCGCCTTCGCCACCGCCGGCGCGCTGATCTACGTGGCCATGCTGATGATGGGCGGGATGGCGCACATCGAC 
TGGGACGAGCACACCGAAACCATCCCGGCGATCGTCACGGTGATCATGATGCCGCTGACCTTCTCGGTGGCC 
GACGGTATCGCCCTGGGCTTCATCACCTACGTCGCGATGAAGGTCCTCACCGGCAAGCACCGCGAAGTCTCG 
GCCAGCCTCTATGCCTTGTTCGTGATCTTCGTCGCCAAGTTCATCTTCCTCTGA