ViewGene

Locus Name:
GeneID:
Location:

GeneID:1176
TrivialName: PA14_13750
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_13750
PAO1 Ortholog Locus:PA3877
Sequence Length:1296
Protein Length:431
Start: 1180817
Stop: 1182112
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07264.1|AE004805_2 (AE004805) nitrite extrusion protein 1 [Pseudomonas aeruginosa PAO1]
Identities = 430/431 (99%), Positives = 430/431 (99%)
Sequence:
ATGGCTTCCCTACGTCAGAAACAGTACTCCGTCCTCGGCATGAGTACCTTGTCCTTCGCGGTGAATTTCGCC
GTGTGGACGATGTTTTCGATCATCGGCATCCGCATCAAGGACGAGCTCGGCCTGAGCGAATCCCAGTTCGGC
CTGATGGTCGCCCTGCCGATCCTCACCGGCTCCCTGGTGCGCCTGCCGCTGGGCCTGATCACCGACCGCTTC
GGCGGCCGCATCGTGTTCTTCATCCACATGCTGCTGGTGGCCATCCCGATCTACGGCCTGGCCTTCGCCAGC
CAGTACTGGCACTACCTGGTGCTCGGCCTGTTCGTCGGCCTGGCTGGCGGCTCCTTCGCGGTCGGCATCGCC
TACACCTCGGCCTGGTTCGAGAAGGAGCGCCAGGGCACCGCGATGGGCATCTTCGGCGCCGGCAACGCCGGC
GCGGCGATCACCAACCTGGTGGCGCCGATGATCGTGGTTGCCTTCGGCTGGCGCATGGTGCCGCAGGTCTAC
TCGGTGGCCATGCTGGTCACCGCCGTGCTGTTCTGGCTGTTCACCTGGACCGATCCGGCGCACCTCAAGGGT
GCCGCCGAGGCCAGCCAGCGGCCGACCCTGGCCAAGCAACTGGCGCCGCTCGCCGAGCTGCGCGTCTGGCGC
TTCGGCCTGTACTACTTCTTCGTCTTCGGCGGCTTCGTCGCCCTGGCCCTGTGGCTGCCGAAGTACTACATC
GCCGAATACGGCCTGGACCTGAAGACCGCGTCCTTCATCACCATGCTGTTCACCCTGCCGTCCGGCCTGATC
CGCGCCCTCGGTGGCTGGTTCAGCGACCACTACGGCGCGCGCTCGGTGAATTGGGGCGTGTTCTGGGTCTGC
CTGGTGTGCCTGTTCTTCCTCTCCTACCCGCAGACCACCATGACCATCCACGGCATCCAGGGCGACCTCAGC
CTGGGTATCGGCCTGAACGTCTGGCTGTTCACCTTCCTGGTGTTCGTCGTCGGCATCGCCCAGGGCTTCGGC
AAGGCCAGCGTGTACCGGATCATCCACGACTACTACCCGAGCAACATGGGCACCGTCGGCGGCATGGTCGGG
GTGATCGGCGGCCTCGGCGGCTTCTGCCTGCCGATCCTGTTCGGCTACGCCGCCGACCACATCGGCGTGCGC
TCCTCCTGCTTCATGTTGCTGTTCGGCCTGACCGTGGTCTGCATGGTCTGGATGCACTACGCGATCAAGCAG
CAACGCCGCATCGACGGCCAGGCCGCCTCGGCCGACGTCGACCTTCCTCCCACCCTTCCCACCCACTCCTGA
Translation:
MASLRQKQYSVLGMSTLSFAVNFAVWTMFSIIGIRIKDELGLSESQFGLMVALPILTGSLVRLPLGLITDRF
GGRIVFFIHMLLVAIPIYGLAFASQYWHYLVLGLFVGLAGGSFAVGIAYTSAWFEKERQGTAMGIFGAGNAG
AAITNLVAPMIVVAFGWRMVPQVYSVAMLVTAVLFWLFTWTDPAHLKGAAEASQRPTLAKQLAPLAELRVWR
FGLYYFFVFGGFVALALWLPKYYIAEYGLDLKTASFITMLFTLPSGLIRALGGWFSDHYGARSVNWGVFWVC
LVCLFFLSYPQTTMTIHGIQGDLSLGIGLNVWLFTFLVFVVGIAQGFGKASVYRIIHDYYPSNMGTVGGMVG
VIGGLGGFCLPILFGYAADHIGVRSSCFMLLFGLTVVCMVWMHYAIKQQRRIDGQAASADVDLPPTLPTHS*
AnnotationID:1185GeneID:1176
AnnotatorUID: diggins
Modification Date/Time: 2005-04-25 10:10:12
Gene Name:narK1
Confidence Code:2
GeneProduct:putative nitrite extrusion protein
Cell Localization:()
Synonyms:narD
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2223
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAG34371.1|AF197465_3 (AF197465) putative nitrate/nitrite transporter; NarD [Pseudomonas
           fluorescens]
          Length = 421

 Score =  464 bits (1193), Expect = e-130
 Identities = 221/413 (53%), Positives = 293/413 (70%), Gaps = 5/413 (1%)

>emb|CAD18123.1| (AL646082) PUTATIVE NITRITE/NITRATE TRANSPORTER TRANSMEMBRANE
           PROTEIN [Ralstonia solanacearum]
          Length = 437

 Score =  459 bits (1181), Expect = e-128
 Identities = 221/410 (53%), Positives = 291/410 (70%), Gaps = 6/410 (1%)

Structural Features:
COG2223, NarK, Nitrate/nitrite transporter 
[Inorganic ion transport and metabolism]
CD-Length = 417 residues,  96.4% aligned
Score =  362 bits (931), Expect = 8e-101
Identities = 175/418 (41%), Positives = 227/418 (54%), Gaps = 23/418 (5%)
Genomic Context:
Comment:
ReferenceID:2355
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19497
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31687
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1176_cdd.html
URL:
ReferenceID:34337
Author/Investigator(s): Ramirez S, Moreno R, Zafra O, Castan P, Valles C, Berenguer J.
Title: Two nitrate/nitrite transporters are encoded within the mobilizable plasmid for nitrate respiration of Thermus thermophilus HB8.
PubMed: 10735860
MedLine:
Source:
J Bacteriol. 2000 Apr;182(8):2179-83.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10735860
Homologs By Global Alignment
Gene ID:1176

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2106 PA3877_tr translation of PA3877 431 99.76 99.76 0 2257.0
70566 gb|AAG07264.1|AE004805_2 (AE004805) nitrite extrusion protein 1 [Pseudomonas aeruginosa PAO1] 431 99.76 99.76 0 2257.0
70567 emb|CAA75538.1| (Y15252) nitrate extrusion protein [Pseudomonas aeruginosa] 431 99.76 99.76 0 2257.0
70568 gb|AAQ60216.1| (AE016919) nitrite extrusion protein [Chromobacterium violaceum ATCC 12472] 432 53.70 70.13 6 1222.0
70569 gb|AAG34371.1|AF197465_3 (AF197465) putative nitrate/nitrite transporter; NarD [Pseudomonas fluorescens] 435 52.64 69.65 18 1192.0
GC ORFID: 44178How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3877Glimmer Score:
Start: 3773121Stop: 3771826
Length: 1296
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3877 translation of PA3877Homolog Bit Score 874.0
Other Homologs: t_PA3877 (ORF: GLIMMER)
GC ORF Sequence
ATGGCTTCCCTACGTCAGAAACAGTACTCCGTCCTCGGCATGAGTACCTTGTCCTTCGCGGTGAATTTCGCC
GTGTGGACGATGTTTTCGATCATCGGCATCCGCATCAAGGACGAGCTCGGCCTGAGCGAATCCCAGTTCGGC
CTGATGGTCGCCCTGCCGATCCTCACCGGCTCCCTGGTGCGCCTGCCGCTGGGCCTGATCACCGACCGCTTC
GGCGGCCGCATCGTGTTCTTCATCCACATGCTGCTGGTGGCCATCCCGATCTACGGCCTGGCCTTCGCCAGC
CAGTACTGGCACTACCTGGTGCTCGGCCTGTTCGTCGGCCTGGCTGGCGGCTCCTTCGCGGTCGGCATCGCC
TACACCTCGGCCTGGTTCGAGAAGGAGCGCCAGGGCACCGCGATGGGCATCTTCGGCGCCGGCAACGCCGGC
GCGGCGATCACCAACCTGGTGGCGCCGATGATCGTGGTTGCCTTCGGCTGGCGCATGGTGCCGCAGGTCTAC
TCGGTGGCCATGCTGGTCACCGCCGTGCTGTTCTGGCTGTTCACCTGGACCGATCCGGCGCACCTCAAGGGT
GCCGCCGAGGCCAGCCAGCGGCCGACCCTGGCCAAGCAACTGGCGCCGCTCGCCGAGCTGCGCGTCTGGCGC
TTCGGCCTGTACTACTTCTTCGTCTTCGGCGGCTTCGTCGCCCTGGCCCTGTGGCTGCCGAAGTACTACATC
GCCGAATACGGCCTGGACCTGAAGACCGCGTCCTTCATCACCATGCTGTTCACCCTGCCGTCCGGCCTGATC
CGCGCCCTCGGTGGCTGGTTCAGCGACCACTACGGCGCGCGCTCGGTGAATTGGGGCGTGTTCTGGGTCTGC
CTGGTGTGCCTGTTCTTCCTCTCCTACCCGCAGACCACCATGACCATCCACGGCATCCAGGGCGACCTCAGC
CTGGGTATCGGCCTGAACGTCTGGCTGTTCACCTTCCTGGTGTTCGTCGTCGGCATCGCCCAGGGCTTCGGC
AAGGCCAGCGTGTACCGGATCATCCACGACTACTACCCGAGCAACATGGGCACCGTCGGCGGCATGGTCGGG
GTGATCGGCGGCCTCGGCGGCTTCTGCCTGCCGATCCTGTTCGGCTACGCCGCCGACCACATCGGCGTGCGC
TCCTCCTGCTTCATGTTGCTGTTCGGCCTGACCGTGGTCTGCATGGTCTGGATGCACTACGCGATCAAGCAG
CAACGCCGCATCGACGGCCAGGCCGCCTCGGCCGACGTCGACCTTCCTCCCACCCTTCCCACCCACTCCTGA