ViewGene
Locus Name:
GeneID:
Location:

GeneID:1175
TrivialName: PA14_16780
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16780
PAO1 Ortholog Locus:PA3679
Sequence Length:1278
Protein Length:425
Start: 1435627
Stop: 1436904
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07067.1|AE004787_7 (AE004787) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 423/425 (99%), Positives = 423/425 (99%)
Sequence:
ATGCAGCAGACCATCGATTGTCCGATTCGCCGGCGCCTGGCGCACCTGCCCTGGGCCAACGACGGGCGTGCC
GGCGCCCGCCACTGGCTGGAGATGCAGCGCGATCCGCTGGCCTGGTTGCAGAAGATGCACGTCGCGCAGCCG
GACCTCGCGGTCGCCCGCATGGGCCCGCAGCGCCTCTGGTGCCTGTTCCATCCGCAGGCGGTGCAGGAATTG
ATGGTCGATCGCCGCGATGACCTGCAACGCTGGCAGCCGGCGCTGTGCATGCTGAAACAGTGGAACGGGCGC
AGCTTCATGATGCGTGAGGGCGCCCCCGCCCAGGCCCGGCGCAAGGAGGTACGGCCGCACCTGGCGCCGCCG
CCGGCCAGCGAGGTTCGCCGCCTGGCCGCGGAGTGGAGCGAGCGGGTGGAGGAGGGGCGCGAATACGACCTC
GACCTGGAAATGGCTGCGTTCAGCGTCACCCTCAGCGGTCACGCGCTGTTCGACGTCGACCTGCAACCGTCG
GCCTATCGGATCGCCAAGGCGGTGCGCCTGCTGTCGCGGGTGGCATTGCTGGAAATGAGCACCGGCCTGCCG
CTGGGCCACTGGTTCCCGAGCAAACTGTGTCCGCGCAAGCGCTGGGCGCTGGGCCAGTTGCGCGAGGCGGTG
GGCGAGGTGGCGGAGCGCTCGCCGCGGCCGCTGGCGGACCTACGCGATGAACTCTGCACCCTGCTCATGGCG
TCCCACCAGTCCACTGGAGTGACCCTGACCTGGAGCCTGTTGCTGCTGGCCCAGCGTCCCGAGTTGCTCGCG
CGGCTACGCGCCGAGCTGGCGGGAGTGAATTGGACGGCGATCCGCTCGGTCGCCGACCTGCGCGATTGCGCG
CTGCTCAGGGCGGTCCTGCAGGAGTGCCTGCGCCTGTACCCGCCGGCCTACGGCCTGGCGCCGCGGCAGGTG
ACGGCGGACATCGAGGTGTTCGGCCAGCGGCTGAAGCGCGGCGACGTGACCATGGTCTCGAGCTGGATCACC
CAGCGCGATCCCCGTTGGTTCGAGGCGCCGCTGGAGTTCCGTCCCGAGCGCTTCCTCGAACCGGCGCGCTGG
CCGCGTGGCGCCTACTTCCCCTTCGGCCTCGGCGACCGCGCTTGCCCCGGCACCGCGATGGCGATGATCGAT
CTGGCGGCGGCGCTGGCCTACTGGGTCGAGCACTGGGACATCATGCACGACGGCGACCTGGCGCCGCGCGGC
TGGTTTTCCCTGCGTCCGCAGCGAGCGCGGGTGCGTTTCCGCCGTCGCGCCTGA
Translation:
MQQTIDCPIRRRLAHLPWANDGRAGARHWLEMQRDPLAWLQKMHVAQPDLAVARMGPQRLWCLFHPQAVQEL
MVDRRDDLQRWQPALCMLKQWNGRSFMMREGAPAQARRKEVRPHLAPPPASEVRRLAAEWSERVEEGREYDL
DLEMAAFSVTLSGHALFDVDLQPSAYRIAKAVRLLSRVALLEMSTGLPLGHWFPSKLCPRKRWALGQLREAV
GEVAERSPRPLADLRDELCTLLMASHQSTGVTLTWSLLLLAQRPELLARLRAELAGVNWTAIRSVADLRDCA
LLRAVLQECLRLYPPAYGLAPRQVTADIEVFGQRLKRGDVTMVSSWITQRDPRWFEAPLEFRPERFLEPARW
PRGAYFPFGLGDRACPGTAMAMIDLAAALAYWVEHWDIMHDGDLAPRGWFSLRPQRARVRFRRRA*
AnnotationID:1184GeneID:1175
AnnotatorUID: diggins
Modification Date/Time: 2005-04-21 10:10:45
Gene Name:
Confidence Code:3
GeneProduct:putative cytochrome P450
Cell Localization:()
Synonyms:PA3679
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2124,pfam00067
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAM78009.1| (AY117439) cytochrome P-450 [Streptomyces carzinostaticus subsp.
           neocarzinostaticus]
          Length = 450

 Score =  119 bits (299), Expect = 3e-26
 Identities = 109/377 (28%), Positives = 167/377 (44%), Gaps = 42/377 (11%)








 
Structural Features:
COG2124, CypX, Cytochrome P450 
[Secondary metabolites biosynthesis, transport, and catabolism] 
CD-Length = 411 residues,  99.0% aligned
Score =  163 bits (414), Expect = 7e-41
Identities = 110/439 (25%), Positives = 167/439 (38%), Gaps = 53/439 (12%)

pfam00067, p450, Cytochrome P450. Cytochrome P450s are involved in the 
oxidative degradation of various compounds.
CD-Length = 461 residues,  91.5% aligned
Score =  144 bits (365), Expect = 4e-35
Identities = 99/422 (23%), Positives = 175/422 (41%), Gaps = 54/422 (12%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2353




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19495




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31866




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1175_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1175
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2105
                           PA3679_tr
                           translation of PA3679
                           425
                           99.52
                           99.52
                           0
                           2258.0
     

     
     
70565
                           gb|AAG07067.1|AE004787_7
                           (AE004787) hypothetical protein PA3679 [Pseudomonas aeruginosa PAO1]
                           425
                           99.52
                           99.52
                           0
                           2258.0
     

     






      

          
GC ORFID: 44177How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3679Glimmer Score: 

          
Start: 3518310Stop: 3517033

          
Length: 1278


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3679 translation of PA3679Homolog Bit Score 874.0

          
Other Homologs:  t_PA3679 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAGCAGACCATCGATTGTCCGATTCGCCGGCGCCTGGCGCACCTGCCCTGGGCCAACGACGGGCGTGCC 
GGCGCCCGCCACTGGCTGGAGATGCAGCGCGATCCGCTGGCCTGGTTGCAGAAGATGCACGTCGCGCAGCCG 
GACCTCGCGGTCGCCCGCATGGGCCCGCAGCGCCTCTGGTGCCTGTTCCATCCGCAGGCGGTGCAGGAATTG 
ATGGTCGATCGCCGCGATGACCTGCAACGCTGGCAGCCGGCGCTGTGCATGCTGAAACAGTGGAACGGGCGC 
AGCTTCATGATGCGTGAGGGCGCCCCCGCCCAGGCCCGGCGCAAGGAGGTACGGCCGCACCTGGCGCCGCCG 
CCGGCCAGCGAGGTTCGCCGCCTGGCCGCGGAGTGGAGCGAGCGGGTGGAGGAGGGGCGCGAATACGACCTC 
GACCTGGAAATGGCTGCGTTCAGCGTCACCCTCAGCGGTCACGCGCTGTTCGACGTCGACCTGCAACCGTCG 
GCCTATCGGATCGCCAAGGCGGTGCGCCTGCTGTCGCGGGTGGCATTGCTGGAAATGAGCACCGGCCTGCCG 
CTGGGCCACTGGTTCCCGAGCAAACTGTGTCCGCGCAAGCGCTGGGCGCTGGGCCAGTTGCGCGAGGCGGTG 
GGCGAGGTGGCGGAGCGCTCGCCGCGGCCGCTGGCGGACCTACGCGATGAACTCTGCACCCTGCTCATGGCG 
TCCCACCAGTCCACTGGAGTGACCCTGACCTGGAGCCTGTTGCTGCTGGCCCAGCGTCCCGAGTTGCTCGCG 
CGGCTACGCGCCGAGCTGGCGGGAGTGAATTGGACGGCGATCCGCTCGGTCGCCGACCTGCGCGATTGCGCG 
CTGCTCAGGGCGGTCCTGCAGGAGTGCCTGCGCCTGTACCCGCCGGCCTACGGCCTGGCGCCGCGGCAGGTG 
ACGGCGGACATCGAGGTGTTCGGCCAGCGGCTGAAGCGCGGCGACGTGACCATGGTCTCGAGCTGGATCACC 
CAGCGCGATCCCCGTTGGTTCGAGGCGCCGCTGGAGTTCCGTCCCGAGCGCTTCCTCGAACCGGCGCGCTGG 
CCGCGTGGCGCCTACTTCCCCTTCGGCCTCGGCGACCGCGCTTGCCCCGGCACCGCGATGGCGATGATCGAT 
CTGGCGGCGGCGCTGGCCTACTGGGTCGAGCACTGGGACATCATGCACGACGGCGACCTGGCGCCGCGCGGC 
TGGTTTTCCCTGCGTCCGCAGCGAGCGCGGGTGCGTTTCCGCCGTCGCGCCTGA