ViewGene
Locus Name:
GeneID:
Location:

GeneID:1174
TrivialName: PA14_29220
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29220
PAO1 Ortholog Locus:PA2700
Sequence Length:1308
Protein Length:435
Start: 2528114
Stop: 2526807
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06088.1|AE004698_4 (AE004698) probable porin [Pseudomonas aeruginosa PAO1]
Identities = 431/435 (99%), Positives = 432/435 (99%)
Sequence:
ATGATCCGCGTTCGACCGGTCGGCCGCCTGGCCCTTTTCCTGGCGCTGGGCGGCACCTCGCCATGCCACGCC
GCGACAGAGGAAGCCAAGGCACCCGACTACCTGGAGTGGCGCCTGCTCAACCGCAACTACTTCCTCTACAAC
GACTATCGCCGCGCGGACGCCAGGCGCGGCTACCGCAAGGAATGGGCACACGGCCTGATCGCCGACCTGGAG
TCGGCCTATACCCCCGGCCGCGTCGGTTTCGGCCTCGATCTCCACGGCTTCGCCGGCTTCAAGCTCGACGGC
GGACGTGGCCATGCCGGCACCGGCCTGTTGCCGCTGGACTCATCCGGCGATAACGCCAGCGAGTATTCCGAC
GCCGGCGCCGCACTCAAGCTGCGGCTCGGCGAGAGCCTGCTCAAGGTCGGCGAGATGACCGTCGAGACCCCG
GTCTTCGATACCAGCGACAAGCGCCTGCAACCCCAGTACGCCAGGGGCTTCTTCCTGCAGAGCGACGACCTC
GACCGCGTGCGGATCCAGGCCGGGCGCTTCACCGCCTTCAAGGAACAGGCCTCCAGCTCCGGCCATGGCGAC
TTCGACGGCTACGGCGCGAGCACCGCCGGCAGCGCCATCGGCTTCGCCGGCGCCAGCCTGGCGGCCAGCGAC
AACCTGAGCGGCTCGCTGTTCGCCGCGCAACTGGACAACGTCTGGCGCCAGGTCTATCTCAACATGAACCTG
CAACGTGCCGCGTTCAGCCTGGATGGCAACCTCTATCGCACGCGCGACCAGGGCCGCAGCCGGGCCGGCGCG
ATCGACACCCTGGCCTACAGCCTGCAACTGAAGTACCGCGTCGGCGCACAGGGTTTCTCCCTGGCCTACCAG
CGTGTCCATGGGGATACGCCGTTCGACTTCGTCGGAGGTGACTCCATCTACCTCGCCAACTCGATCAAGTAC
GCCGATTTCAACGGTCCCGGCGAACGCTCCTGGCAGGCCCGCTACGACCTCGACCTGGCCCCGTTCGGCCTG
CCGGGACTGAGCTTCATGGCGCGTTACGTCAGCGGCCGCGCCATCGACGGCAGCCATGCGCCGGCCGGCGGC
GCCTACAACCCGCTGGGCGCCGATGGCCGCTACCGGCCCTTGCAGGGCAGCGGCGGCAAGCACTGGGAGCGC
GACCTCGACCTGCGCTACGTGTTCGCCTCGGGCCCGCTCAAGGACCTCTCGCTGAACGTCTCGCACCTCAGC
CATCGGGCCAACGCGGCCCAGGCCGGCGACGACATCGACCGCCTCTACCTGATCGTCGAATACCCACTCAAA
GGCTCGCTCTGA
Translation:
MIRVRPVGRLALFLALGGTSPCHAATEEAKAPDYLEWRLLNRNYFLYNDYRRADARRGYRKEWAHGLIADLE
SAYTPGRVGFGLDLHGFAGFKLDGGRGHAGTGLLPLDSSGDNASEYSDAGAALKLRLGESLLKVGEMTVETP
VFDTSDKRLQPQYARGFFLQSDDLDRVRIQAGRFTAFKEQASSSGHGDFDGYGASTAGSAIGFAGASLAASD
NLSGSLFAAQLDNVWRQVYLNMNLQRAAFSLDGNLYRTRDQGRSRAGAIDTLAYSLQLKYRVGAQGFSLAYQ
RVHGDTPFDFVGGDSIYLANSIKYADFNGPGERSWQARYDLDLAPFGLPGLSFMARYVSGRAIDGSHAPAGG
AYNPLGADGRYRPLQGSGGKHWERDLDLRYVFASGPLKDLSLNVSHLSHRANAAQAGDDIDRLYLIVEYPLK
GSL*
AnnotationID:1183GeneID:1174
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 20:08:53
Gene Name:
Confidence Code:3
GeneProduct:putative porin
Cell Localization:()
Synonyms:opdB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03573
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70815.1|AE016725_8 (AE016793) porin, putative [Pseudomonas putida KT2440]
          Length = 420

 Score =  521 bits (1342), Expect = e-147
 Identities = 262/421 (62%), Positives = 310/421 (73%), Gaps = 13/421 (3%)








 
Structural Features:
pfam03573, OprD, outer membrane porin, OprD family.
CD-Length = 449 residues,  98.9% aligned
Score =  228 bits (582), Expect = 8e-61
Identities = 156/447 (34%), Positives = 223/447 (49%), Gaps = 58/447 (12%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2351




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19493




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36330




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1174_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1174
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2102
                           PA2700_tr
                           translation of PA2700
                           435
                           99.08
                           99.31
                           0
                           2257.0
     

     
     
70559
                           gb|AAG06088.1|AE004698_4
                           (AE004698) probable porin [Pseudomonas aeruginosa PAO1]
                           435
                           99.08
                           99.31
                           0
                           2257.0
     

     
     
70560
                           gb|AAN70815.1|AE016725_8
                           (AE016793) porin, putative [Pseudomonas putida KT2440]
                           437
                           61.09
                           72.08
                           19
                           1353.0
     

     
     
2103
                           PA0958_tr
                           translation of PA0958
                           458
                           41.48
                           57.64
                           38
                           876.0
     

     
     
70561
                           gb|AAG04347.1|AE004529_13
                           (AE004529) Basic amino acid, basic peptide and imipenem outer membrane porin OprD precursor [Pseudomonas aeruginosa PAO1]
                           458
                           41.48
                           57.64
                           38
                           876.0
     

     






      

          
GC ORFID: 44176How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2700Glimmer Score: 

          
Start: 2425812Stop: 2427119

          
Length: 1308


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2700 translation of PA2700Homolog Bit Score 874.0

          
Other Homologs:  t_PA0958 (ORF: BLASTX 332.0), t_PA0189 (ORF: BLASTX 293.0), t_PA2700 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCCGCGTTCGACCGGTCGGCCGCCTGGCCCTTTTCCTGGCGCTGGGCGGCACCTCGCCATGCCACGCC 
GCGACAGAGGAAGCCAAGGCACCCGACTACCTGGAGTGGCGCCTGCTCAACCGCAACTACTTCCTCTACAAC 
GACTATCGCCGCGCGGACGCCAGGCGCGGCTACCGCAAGGAATGGGCACACGGCCTGATCGCCGACCTGGAG 
TCGGCCTATACCCCCGGCCGCGTCGGTTTCGGCCTCGATCTCCACGGCTTCGCCGGCTTCAAGCTCGACGGC 
GGACGTGGCCATGCCGGCACCGGCCTGTTGCCGCTGGACTCATCCGGCGATAACGCCAGCGAGTATTCCGAC 
GCCGGCGCCGCACTCAAGCTGCGGCTCGGCGAGAGCCTGCTCAAGGTCGGCGAGATGACCGTCGAGACCCCG 
GTCTTCGATACCAGCGACAAGCGCCTGCAACCCCAGTACGCCAGGGGCTTCTTCCTGCAGAGCGACGACCTC 
GACCGCGTGCGGATCCAGGCCGGGCGCTTCACCGCCTTCAAGGAACAGGCCTCCAGCTCCGGCCATGGCGAC 
TTCGACGGCTACGGCGCGAGCACCGCCGGCAGCGCCATCGGCTTCGCCGGCGCCAGCCTGGCGGCCAGCGAC 
AACCTGAGCGGCTCGCTGTTCGCCGCGCAACTGGACAACGTCTGGCGCCAGGTCTATCTCAACATGAACCTG 
CAACGTGCCGCGTTCAGCCTGGATGGCAACCTCTATCGCACGCGCGACCAGGGCCGCAGCCGGGCCGGCGCG 
ATCGACACCCTGGCCTACAGCCTGCAACTGAAGTACCGCGTCGGCGCACAGGGTTTCTCCCTGGCCTACCAG 
CGTGTCCATGGGGATACGCCGTTCGACTTCGTCGGAGGTGACTCCATCTACCTCGCCAACTCGATCAAGTAC 
GCCGATTTCAACGGTCCCGGCGAACGCTCCTGGCAGGCCCGCTACGACCTCGACCTGGCCCCGTTCGGCCTG 
CCGGGACTGAGCTTCATGGCGCGTTACGTCAGCGGCCGCGCCATCGACGGCAGCCATGCGCCGGCCGGCGGC 
GCCTACAACCCGCTGGGCGCCGATGGCCGCTACCGGCCCTTGCAGGGCAGCGGCGGCAAGCACTGGGAGCGC 
GACCTCGACCTGCGCTACGTGTTCGCCTCGGGCCCGCTCAAGGACCTCTCGCTGAACGTCTCGCACCTCAGC 
CATCGGGCCAACGCGGCCCAGGCCGGCGACGACATCGACCGCCTCTACCTGATCGTCGAATACCCACTCAAA 
GGCTCGCTCTGA