ViewGene

Locus Name:
GeneID:
Location:

GeneID:1173
TrivialName: PA14_38530
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38530
PAO1 Ortholog Locus:PA2008
Sequence Length:1299
Protein Length:432
Start: 3436772
Stop: 3438070
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05396.1|AE004627_4 (AE004627) fumarylacetoacetase [Pseudomonas aeruginosa PAO1]
Identities = 430/432 (99%), Positives = 430/432 (99%)
Sequence:
ATGAACCAGCCAACCCCCACTCGTAGCTGGGTCGCCTCCGCCAATGGGCATGCCGACTTTCCCCTGCAAAAC
CTGCCGCTGGGCATCTTCAGCCGTGCCGGCCTGAGCCCGCGTTGCGGCGTGGCCATCGGCGACTCGATCCTC
GACCTGGACGCGGCGCTGGCCGCCGGGCTGTTCGAGGGGGCCGCCGGCGAAGCCGCCGAAGCCACCCGCGGC
GGCGCGCTGAACGCCTTCTTCGCCCTCGGCAAACCGGCCCGCGTGGCGCTGCGCCAGCGCCTGCTGGAGCTG
CTCGGCGAAGGCGCCGCGGAGCGCCCGGAGCTGCTCCATGCGGCCGCCGAGTGCCAAATGCACCTACCGGCC
AGGATCGGCGACTACACCGACTTCTACGTCGGCATCCGCCATGCCGAGAACGTCGGCAAGCTGTTCCGCCCG
GACAACCCGCTGCTGCCCAACTACAAGCACGTGCCCATCGGCTACCACGGCCGCGCCTCGACCGTGCGCGTC
TCCGGCAGCGAAGTGCGCCGGCCCAACGGCCAGACCCTGCCGGCCGGCGCCAGCGAGCCGGTGTTCGGTCCC
TGTGCGCGTCTGGACTACGAACTGGAGCTAGGCATCTGGATCGGCCAAGGCAACGCCCTCGGCGAAGCCATC
CCGGTTTCCCGCGCCGCCGAGCACATCGCCGGCTTCTGTCTGCTCAACGACTGGTCGGCGCGCGACATCCAG
GCCTGGGAATACCAGCCGCTCGGCCCGTTCCTGTCGAAGAGCTTCATCACCAGCGTTTCGCCCTGGGTGGTC
ACCGCCGAAGCCCTGGAGCCGTTCCGCCGCGCCCAGCCAGCGCGCCCCGAAGGCGACCCGCGGCCGCTGCCG
TATCTTTACGACGACAACGACCAGGCCCACGGCGCCTTCGACATCGAGCTGGAGGTCCTGCTGCTCACCGAG
GGCCTGCGCGAGAAAGGCCTGCCGCCGCAGCGCCTGACCCTGAGCAACAGCCTGAGCATGTACTGGACGGTG
GCGCAGATGGTCGCCCACCACAGCGTCAATGGCTGCCAGTTGCAGCCCGGCGACCTGTTCGGCTCCGGCACC
CTGTCCGGCGCCGAGCCCGGCCAGTTCGGCTCGCTGCTGGAGATCACCGCTGGCGGCAAGCAGCCGGTGCAA
CTGGCCTCCGGCGAGACCCGGCGCTTCCTCGAGGACGGCGACGAGGTCATCCTCCGCGCCCGCTGCAAGCGC
GAGGGACACGTCTCGATCGGTTTCGGCGAATGTCGCGGCAAAGTGCTCGCGGCCCATCCGGGGGCGCGCGGA
TGA
Translation:
MNQPTPTRSWVASANGHADFPLQNLPLGIFSRAGLSPRCGVAIGDSILDLDAALAAGLFEGAAGEAAEATRG
GALNAFFALGKPARVALRQRLLELLGEGAAERPELLHAAAECQMHLPARIGDYTDFYVGIRHAENVGKLFRP
DNPLLPNYKHVPIGYHGRASTVRVSGSEVRRPNGQTLPAGASEPVFGPCARLDYELELGIWIGQGNALGEAI
PVSRAAEHIAGFCLLNDWSARDIQAWEYQPLGPFLSKSFITSVSPWVVTAEALEPFRRAQPARPEGDPRPLP
YLYDDNDQAHGAFDIELEVLLLTEGLREKGLPPQRLTLSNSLSMYWTVAQMVAHHSVNGCQLQPGDLFGSGT
LSGAEPGQFGSLLEITAGGKQPVQLASGETRRFLEDGDEVILRARCKREGHVSIGFGECRGKVLAAHPGARG
*
AnnotationID:1182GeneID:1173
AnnotatorUID: diggins
Modification Date/Time: 2005-04-28 17:05:26
Gene Name:fahA
Confidence Code:2
GeneProduct:fumarylacetoacetase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:fumarylacetoacetate hydrolase
Functional Category Confidence Code:5
COGs:pfam01557
Secondary Functional Category(ies):central intermediary metabolism
EC Number:3.7.1.2
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70193.1|AE016658_10 (AE016791) fumarylacetoacetase [Pseudomonas putida KT2440]
          Length = 430

 Score =  692 bits (1787), Expect = 0.0
 Identities = 340/431 (78%), Positives = 377/431 (87%), Gaps = 5/431 (1%)

>gb|AAO57025.1| (AE016868) fumarylacetoacetase [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 431

 Score =  627 bits (1618), Expect = e-179
 Identities = 310/429 (72%), Positives = 345/429 (80%), Gaps = 6/429 (1%)

>emb|CAE43402.1| (BX640420) fumarylacetoacetase [Bordetella pertussis]
          Length = 437

 Score =  466 bits (1200), Expect = e-131
 Identities = 243/426 (57%), Positives = 293/426 (68%), Gaps = 9/426 (2%)

Structural Features:
pfam01557, FAA_hydrolase, Fumarylacetoacetate (FAA) hydrolase family. 
CD-Length = 168 residues,  98.8% aligned
Score =  135 bits (341), Expect = 1e-32
Identities = 58/223 (26%), Positives = 94/223 (42%), Gaps = 60/223 (26%)
Genomic Context:
Comment:
ReferenceID:2349
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19491
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34382
Author/Investigator(s): Fernandez-Canon JM, Penalva MA.
Title: Characterization of a fungal maleylacetoacetate isomerase gene and identification of its human homologue.
PubMed: 9417084
MedLine:
Source:
J Biol Chem. 1998 Jan 2;273(1):329-37.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9417084
ReferenceID:38057
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1173_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1173

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2101 PA2008_tr translation of PA2008 432 99.53 99.53 0 2258.0
70548 gb|AAG05396.1|AE004627_4 (AE004627) fumarylacetoacetase [Pseudomonas aeruginosa PAO1] 432 99.53 99.53 0 2258.0
70549 gb|AAN70193.1|AE016658_10 (AE016791) fumarylacetoacetase [Pseudomonas putida KT2440] 436 77.98 86.46 10 1792.0
70550 gb|AAO57025.1| (AE016868) fumarylacetoacetase [Pseudomonas syringae pv. tomato str. DC3000] 438 70.77 78.76 13 1621.0
70551 emb|CAE43402.1| (BX640420) fumarylacetoacetase [Bordetella pertussis] [Bordetella pertussis Tohama I] 446 55.15 66.59 23 1209.0
GC ORFID: 44175How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2008Glimmer Score:
Start: 1517139Stop: 1515841
Length: 1299
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2008 translation of PA2008Homolog Bit Score 874.0
Other Homologs: psyr_15may02_Scaffold9_revised_gene8019 (ORF: BLASTX 620.0), t_PA2008 (ORF: GLIMMER)
GC ORF Sequence
ATGAACCAGCCAACCCCCACTCGTAGCTGGGTCGCCTCCGCCAATGGGCATGCCGACTTTCCCCTGCAAAAC
CTGCCGCTGGGCATCTTCAGCCGTGCCGGCCTGAGCCCGCGTTGCGGCGTGGCCATCGGCGACTCGATCCTC
GACCTGGACGCGGCGCTGGCCGCCGGGCTGTTCGAGGGGGCCGCCGGCGAAGCCGCCGAAGCCACCCGCGGC
GGCGCGCTGAACGCCTTCTTCGCCCTCGGCAAACCGGCCCGCGTGGCGCTGCGCCAGCGCCTGCTGGAGCTG
CTCGGCGAAGGCGCCGCGGAGCGCCCGGAGCTGCTCCATGCGGCCGCCGAGTGCCAAATGCACCTACCGGCC
AGGATCGGCGACTACACCGACTTCTACGTCGGCATCCGCCATGCCGAGAACGTCGGCAAGCTGTTCCGCCCG
GACAACCCGCTGCTGCCCAACTACAAGCACGTGCCCATCGGCTACCACGGCCGCGCCTCGACCGTGCGCGTC
TCCGGCAGCGAAGTGCGCCGGCCCAACGGCCAGACCCTGCCGGCCGGCGCCAGCGAGCCGGTGTTCGGTCCC
TGTGCGCGTCTGGACTACGAACTGGAGCTAGGCATCTGGATCGGCCAAGGCAACGCCCTCGGCGAAGCCATC
CCGGTTTCCCGCGCCGCCGAGCACATCGCCGGCTTCTGTCTGCTCAACGACTGGTCGGCGCGCGACATCCAG
GCCTGGGAATACCAGCCGCTCGGCCCGTTCCTGTCGAAGAGCTTCATCACCAGCGTTTCGCCCTGGGTGGTC
ACCGCCGAAGCCCTGGAGCCGTTCCGCCGCGCCCAGCCAGCGCGCCCCGAAGGCGACCCGCGGCCGCTGCCG
TATCTTTACGACGACAACGACCAGGCCCACGGCGCCTTCGACATCGAGCTGGAGGTCCTGCTGCTCACCGAG
GGCCTGCGCGAGAAAGGCCTGCCGCCGCAGCGCCTGACCCTGAGCAACAGCCTGAGCATGTACTGGACGGTG
GCGCAGATGGTCGCCCACCACAGCGTCAATGGCTGCCAGTTGCAGCCCGGCGACCTGTTCGGCTCCGGCACC
CTGTCCGGCGCCGAGCCCGGCCAGTTCGGCTCGCTGCTGGAGATCACCGCTGGCGGCAAGCAGCCGGTGCAA
CTGGCCTCCGGCGAGACCCGGCGCTTCCTCGAGGACGGCGACGAGGTCATCCTCCGCGCCCGCTGCAAGCGC
GAGGGACACGTCTCGATCGGTTTCGGCGAATGTCGCGGCAAAGTGCTCGCGGCCCATCCGGGGGCGCGCGGA
TGA