ViewGene

Locus Name:
GeneID:
Location:

GeneID:1170
TrivialName: PA14_57390
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57390
PAO1 Ortholog Locus:PA4416
Sequence Length:1377
Protein Length:458
Start: 5114706
Stop: 5113330
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07804.1|AE004856_15 (AE004856) UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas aeruginosa PAO1]
Identities = 457/458 (99%), Positives = 458/458 (100%)
Sequence:
ATGCTTGAGCCTCTTCGCCTCAGCCAGTTGACGGTCGCGCTGGACGCCCGCCTGATCGGCGAGGACGCCGTC
TTTTCGGCGGTTTCCACCGACAGTCGCGCCATCGGGCCCGGCCAACTGTTCATTGCCCTGAGTGGGCCGCGT
TTCGACGGCCACGACTATCTCTCCGAGGTTGCCGCCAAGGGCGCGGTGGCTGCGCTGGTGGAGCGCGAAGTC
GCCGACGCGCCCCTGCCGCAATTGCTGGTGCGCGATACCCGTGCGGCCCTGGGGCGACTGGGCGCGCTGAAC
CGGCGCAAGTTCACCGGCCCGCTGGCGGCCATGACGGGCTCCAGCGGCAAGACCACGGTCAAGGAGATGCTC
GCCAGCATCCTGCGTACCCAGGCCGGCGATGCCGAGTCGGTGCTGGCTACCCGTGGCAATCTGAACAACGAC
CTCGGCGTACCGCTGACCCTGCTGCAACTGGCGCCGCAGCACCGTAGCGCAGTGATCGAACTGGGCGCCTCG
CGCATCGGCGAGATCGCCTACACGGTCGAGCTGACCCGCCCGCACGTGGCGATCATCACCAATGCCGGCACC
GCCCATGTCGGCGAGTTCGGCGGACCGGAGAAGATCGTCGAGGCGAAGGGCGAGATACTCGAAGGGCTGGCC
GCCGACGGCACCGCCGTGCTGAACCTGGACGACAAGGCCTTCGACACCTGGAAGGCCCGTGCCAGCGGCCGT
CCGTTGCTGACTTTCTCCCTCGACCGGCCCCAGGCCGATTTCCGCGCCGCCGATCTGCAGCGCGATGCGCGC
GGCTGCATGGGCTTCAGGCTGCAGGGCGTAGCGGGTGAAGCGCAGGTCCAGCTCAACCTGCTGGGGCGGCAC
AATGTCGCCAATGCCCTGGCTGCCGCCGCTGCCGCCCATGCACTGGGCGTGCCGCTGGATGGGATCGTCGCC
GGGCTGCAGGCGCTGCAGCCGGTCAAGGGCCGCGCGGTAGCGCAACTGACCGCCAGCGGGCTGCGTGTGATA
GACGACAGCTACAACGCCAACCCCGCGTCAATGCTGGCGGCGATTGATATACTGAGCGGCTTTTCCGGGCGC
ACCGTCCTGGTCCTCGGAGACATGGGCGAACTCGGTTCCTGGGCCGAGCAGGCCCACCGCGAGGTGGGCGCC
TACGCCGCTGGCAAGGTGTCCGCGCTCTATGCGGTCGGACCGCTGATGGCCCACGCCGTACAGGCGTTCGGC
GCCACGGGCCGGCACTTCGCCGACCAGGCCAGCCTGATCGGGGCGCTGGCCACCGAACAACCGACAACCACC
ATTTTGATCAAGGGTTCCCGCAGCGCGGCGATGGACAAAGTCGTCGCGGCGCTGTGCGGTTCCTCCGAGGAG
AGTCACTAA
Translation:
MLEPLRLSQLTVALDARLIGEDAVFSAVSTDSRAIGPGQLFIALSGPRFDGHDYLSEVAAKGAVAALVEREV
ADAPLPQLLVRDTRAALGRLGALNRRKFTGPLAAMTGSSGKTTVKEMLASILRTQAGDAESVLATRGNLNND
LGVPLTLLQLAPQHRSAVIELGASRIGEIAYTVELTRPHVAIITNAGTAHVGEFGGPEKIVEAKGEILEGLA
ADGTAVLNLDDKAFDTWKARASGRPLLTFSLDRPQADFRAADLQRDARGCMGFRLQGVAGEAQVQLNLLGRH
NVANALAAAAAAHALGVPLDGIVAGLQALQPVKGRAVAQLTASGLRVIDDSYNANPASMLAAIDILSGFSGR
TVLVLGDMGELGSWAEQAHREVGAYAAGKVSALYAVGPLMAHAVQAFGATGRHFADQASLIGALATEQPTTT
ILIKGSRSAAMDKVVAALCGSSEESH*
AnnotationID:1179GeneID:1170
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 18:06:00
Gene Name:murF
Confidence Code:2
GeneProduct:UDP-N-acetylmuramyl pentapeptide synthase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase
Functional Category Confidence Code:5
COGs:COG0770,COG0769,pfam01225
Secondary Functional Category(ies):
EC Number:6.3.2.15
Status:ACTIVE
Pathway:
Homology:
>gb|AAO57861.1| (AE016871) UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 456

 Score =  633 bits (1632), Expect = 0.0
 Identities = 332/460 (72%), Positives = 376/460 (81%), Gaps = 6/460 (1%)

>gb|AAN66956.1|AE016324_6 (AE016779) UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           putida KT2440]
          Length = 455

 Score =  621 bits (1601), Expect = e-177
 Identities = 324/459 (70%), Positives = 369/459 (80%), Gaps = 5/459 (1%)
Structural Features:
COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase 
[Cell envelope biogenesis, outer membrane]
CD-Length = 451 residues,  99.6% aligned
Score =  445 bits (1147), Expect = 9e-126
Identities = 213/455 (46%), Positives = 274/455 (60%), Gaps = 12/455 (2%)

COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase 
[Cell envelope biogenesis, outer membrane]
CD-Length = 475 residues, only  74.9% aligned
Score =  148 bits (375), Expect = 3e-36
Identities = 110/360 (30%), Positives = 168/360 (46%), Gaps = 22/360 (6%)

pfam01225, Mur_ligase, Mur ligase family, catalytic domain.
CD-Length = 267 residues, 100.0% aligned
Score =  144 bits (365), Expect = 3e-35
Identities = 89/280 (31%), Positives = 127/280 (45%), Gaps = 18/280 (6%)
Genomic Context:
Comment:
ReferenceID:2343
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19485
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31457
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1170_cdd.html
URL:
ReferenceID:32802
Author/Investigator(s): Azzolina BA, Yuan X, Anderson MS, El-Sherbeini M.
Title: The cell wall and cell division gene cluster in the Mra operon of Pseudomonas aeruginosa: cloning, production, and purification of active enzymes.
PubMed: 11281713
MedLine:
Source:
Protein Expr Purif. 2001 Apr;21(3):393-400.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11281713
Homologs By Global Alignment
Gene ID:1170

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2098 PA4416_tr translation of PA4416 458 99.78 99.99 0 2260.0
70039 gb|AAG07804.1|AE004856_15 (AE004856) UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas aeruginosa PAO1] 458 99.78 99.99 0 2260.0
70040 gb|AAG45236.1| (AY008276) MurF [Pseudomonas aeruginosa] 458 99.56 99.78 0 2255.0
70041 gb|AAO57861.1| (AE016871) UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas syringae pv. tomato str. DC3000] 460 72.17 81.73 6 1639.0
70042 gb|AAN66956.1|AE016324_6 (AE016779) UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas putida KT2440] 459 70.58 80.39 5 1606.0
GC ORFID: 44172How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4416Glimmer Score:
Start: 4378384Stop: 4377008
Length: 1377
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA4416 translation of PA4416Homolog Bit Score 875.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene1124 (ORF: BLASTX 630.0), t_PA4416 (ORF: GLIMMER)
GC ORF Sequence
ATGCTTGAGCCTCTTCGCCTCAGCCAGTTGACGGTCGCGCTGGACGCCCGCCTGATCGGCGAGGACGCCGTC
TTTTCGGCGGTTTCCACCGACAGTCGCGCCATCGGGCCCGGCCAACTGTTCATTGCCCTGAGTGGGCCGCGT
TTCGACGGCCACGACTATCTCTCCGAGGTTGCCGCCAAGGGCGCGGTGGCTGCGCTGGTGGAGCGCGAAGTC
GCCGACGCGCCCCTGCCGCAATTGCTGGTGCGCGATACCCGTGCGGCCCTGGGGCGACTGGGCGCGCTGAAC
CGGCGCAAGTTCACCGGCCCGCTGGCGGCCATGACGGGCTCCAGCGGCAAGACCACGGTCAAGGAGATGCTC
GCCAGCATCCTGCGTACCCAGGCCGGCGATGCCGAGTCGGTGCTGGCTACCCGTGGCAATCTGAACAACGAC
CTCGGCGTACCGCTGACCCTGCTGCAACTGGCGCCGCAGCACCGTAGCGCAGTGATCGAACTGGGCGCCTCG
CGCATCGGCGAGATCGCCTACACGGTCGAGCTGACCCGCCCGCACGTGGCGATCATCACCAATGCCGGCACC
GCCCATGTCGGCGAGTTCGGCGGACCGGAGAAGATCGTCGAGGCGAAGGGCGAGATACTCGAAGGGCTGGCC
GCCGACGGCACCGCCGTGCTGAACCTGGACGACAAGGCCTTCGACACCTGGAAGGCCCGTGCCAGCGGCCGT
CCGTTGCTGACTTTCTCCCTCGACCGGCCCCAGGCCGATTTCCGCGCCGCCGATCTGCAGCGCGATGCGCGC
GGCTGCATGGGCTTCAGGCTGCAGGGCGTAGCGGGTGAAGCGCAGGTCCAGCTCAACCTGCTGGGGCGGCAC
AATGTCGCCAATGCCCTGGCTGCCGCCGCTGCCGCCCATGCACTGGGCGTGCCGCTGGATGGGATCGTCGCC
GGGCTGCAGGCGCTGCAGCCGGTCAAGGGCCGCGCGGTAGCGCAACTGACCGCCAGCGGGCTGCGTGTGATA
GACGACAGCTACAACGCCAACCCCGCGTCAATGCTGGCGGCGATTGATATACTGAGCGGCTTTTCCGGGCGC
ACCGTCCTGGTCCTCGGAGACATGGGCGAACTCGGTTCCTGGGCCGAGCAGGCCCACCGCGAGGTGGGCGCC
TACGCCGCTGGCAAGGTGTCCGCGCTCTATGCGGTCGGACCGCTGATGGCCCACGCCGTACAGGCGTTCGGC
GCCACGGGCCGGCACTTCGCCGACCAGGCCAGCCTGATCGGGGCGCTGGCCACCGAACAACCGACAACCACC
ATTTTGATCAAGGGTTCCCGCAGCGCGGCGATGGACAAAGTCGTCGCGGCGCTGTGCGGTTCCTCCGAGGAG
AGTCACTAA