ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1169

TrivialName: PA14_15230

AnnotatorUID: danlee

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_15230

PAO1 Ortholog Locus: PA3777

Sequence Length: 1380

Protein Length: 459

Start: 1291259

Stop: 1289880

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG07164.1|AE004796_9 (AE004796) exodeoxyribonuclease VII large subunit [Pseudomonas aeruginosa PAO1] Identities = 457/459 (99%), Positives = 457/459 (99%) with PA3777 (of PAO1).

Sequence:

ATGCGTAACGATCCCTTCCAACGGCTCGGCCTCGATCGCGAGGTGCTGACCGTCAGCCAACTGAACCAGCGC
GCCCGCCTGCTGCTGGAAGACGTGTTCCCGCAGGTCTGGGTCGAGGGCGAGCTGTCCAACCTCGCCCGGCCG
GCCTCCGGCCATGTCTACTTCACCCTCAAGGACAGCAACGCGCAGATCCGCTGCGCGCTGTTCCGGCAGAAC
GCCCTGCGCGTACGCCAGGCCTTGCGCGACGGGCTGGCGGTAAAGGTGCGCGGGAAGATCTCGCTGTTCGAG
GGACGCGGCGACTACCAGTTGATCGCCGATACCGTCGAGCCGGCCGGCGACGGCGCCCTGCGCCTGGCCTTC
GAGGCATTGAAGGAAAAACTCGCCGGCGAAGGCCTGTTCGCCAGCGAACGCAAGCGTCCGCTGCCCGCCCAT
CCGCGCCGCATCGGTATCGTCAGTTCGCCCAGCGGGGCGGTGATCCGCGACATCATCAGCGTGTTTCGCCGC
CGCGCACCGCAGGTCGAGCTGACCCTGGTGCCCACCGCAGTGCAGGGCCGCGAGGCCGTCGCGCAGATCGTC
CGCGCGCTGCAACTGGCCGACCGGCAAGGCTTCGACGCGCTGATCCTGGCCCGGGGCGGCGGTTCCCTGGAA
GACCTCTGGTGCTTCAACGAAGAAGCGGTGGCGCGCGCCGTGGCGGCCTGCGCCACGCCGATCGTCAGCGCG
GTCGGCCACGAGACCGACGTATCGATCAGCGACTTCGTCGCCGACGTGCGCGCCCCGACGCCTTCGGCCGCC
GCCGAACTGCTGGCGCCCAACGCCGGCGACCTGCAGCAGCGTCTCGACGGCCTGCGCCGGCGCCTGGTGCTG
CGCATGCGCGACCAGTTGCTGCGCGAACGCCTGCGCCTGGAAGGCGTCGCCCGCCGCCTGCGCCATCCCGGA
GAACGCCTGCGCCAGCAGGCGCAGCGCCTGGACGACCTGGACATGCGCCTGCGCCGTGCCTTCGAGCGCCAT
CTGGCGGTCCGCCACGAACGCCTGGTCCGCCTGGAGACGCGTCTCGCCGCACAGCATCCGGGCCGCACCCTG
GCGCTGCTCCGGCAGAAGCTCGACAGCCTCGCCGCGCGCCTGCCGCGCGCCGCCCGCGAGGTACTGAAGGAT
CGTCGTCAGCACCTCGAAGGACTGGCGCAGACGCTCAACGTGGTCAGCCCGCTGGCGACCCTGGGCCGCGGC
TACAGCATCCTCCTCGACGAGCGTGGCCGGGCGATCCGCGATGCCGGCCAGACCCAGCCGGGACAGCGCCTG
AAGGCGCGCCTCGCGGAAGGCGAACTGGAGGTGCGGGTCGAGGACAACCACCGGACGCCGGTGACCCTGTCG
CTGCTGGACTGA

Translation:

MRNDPFQRLGLDREVLTVSQLNQRARLLLEDVFPQVWVEGELSNLARPASGHVYFTLKDSNAQIRCALFRQN
ALRVRQALRDGLAVKVRGKISLFEGRGDYQLIADTVEPAGDGALRLAFEALKEKLAGEGLFASERKRPLPAH
PRRIGIVSSPSGAVIRDIISVFRRRAPQVELTLVPTAVQGREAVAQIVRALQLADRQGFDALILARGGGSLE
DLWCFNEEAVARAVAACATPIVSAVGHETDVSISDFVADVRAPTPSAAAELLAPNAGDLQQRLDGLRRRLVL
RMRDQLLRERLRLEGVARRLRHPGERLRQQAQRLDDLDMRLRRAFERHLAVRHERLVRLETRLAAQHPGRTL
ALLRQKLDSLAARLPRAAREVLKDRRQHLEGLAQTLNVVSPLATLGRGYSILLDERGRAIRDAGQTQPGQRL
KARLAEGELEVRVEDNHRTPVTLSLLD*

AnnotationID:1178 GeneID:1169

AnnotatorUID: danlee

Modification Date/Time: 2003-10-20 16:04:53

Gene Name: xseA

Confidence Code: 2

GeneProduct: exodeoxyribonuclease VII large subunit

Cell Localization: ()

Synonyms: alt. GeneProduct name: Exonuclease VII

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (11) DNA replication, recombination, modification and repair

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

457/459 (99%) identical to PAO1 xseA (PA3777).

Structural Features:

Genomic Context:

Comment:

ReferenceID:2341

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:19483

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:1169

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2097 PA3777_tr translation of PA3777 459 99.56 99.56 0 2261.0

69993 gb|AAG07164.1|AE004796_9 (AE004796) exodeoxyribonuclease VII large subunit [Pseudomonas aeruginosa PAO1] 459 99.56 99.56 0 2261.0

69994 gb|AAN66652.1|AE016293_2 (AE016777) exodeoxyribonuclease VII, large subunit [Pseudomonas putida KT2440] 459 81.91 89.54 0 1878.0

69995 gb|AAO54967.1| (AE016861) exodeoxyribonuclease VII, large subunit [Pseudomonas syringae pv. tomato str. DC3000] 463 79.48 88.98 4 1868.0

69996 gb|AAC77362.1| (AF033853) exodeoxyribonuclease VII large subunit; DNA repair protein [Pseudomonas fluorescens] 461 70.28 77.22 62 1602.0

GC ORFID: `44171`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA3777`	Glimmer Score:
Start: `3662678`	Stop: `3664057`
Length: `1380`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA3777 translation of PA3777`	Homolog Bit Score `875.0`
Other Homologs: `psyr_15may02_Scaffold3_revised_gene4854 (ORF: BLASTX 725.0), t_PA3777 (ORF: GLIMMER)`
GC ORF Sequence
ATGCGTAACGATCCCTTCCAACGGCTCGGCCTCGATCGCGAGGTGCTGACCGTCAGCCAACTGAACCAGCGC GCCCGCCTGCTGCTGGAAGACGTGTTCCCGCAGGTCTGGGTCGAGGGCGAGCTGTCCAACCTCGCCCGGCCG GCCTCCGGCCATGTCTACTTCACCCTCAAGGACAGCAACGCGCAGATCCGCTGCGCGCTGTTCCGGCAGAAC GCCCTGCGCGTACGCCAGGCCTTGCGCGACGGGCTGGCGGTAAAGGTGCGCGGGAAGATCTCGCTGTTCGAG GGACGCGGCGACTACCAGTTGATCGCCGATACCGTCGAGCCGGCCGGCGACGGCGCCCTGCGCCTGGCCTTC GAGGCATTGAAGGAAAAACTCGCCGGCGAAGGCCTGTTCGCCAGCGAACGCAAGCGTCCGCTGCCCGCCCAT CCGCGCCGCATCGGTATCGTCAGTTCGCCCAGCGGGGCGGTGATCCGCGACATCATCAGCGTGTTTCGCCGC CGCGCACCGCAGGTCGAGCTGACCCTGGTGCCCACCGCAGTGCAGGGCCGCGAGGCCGTCGCGCAGATCGTC CGCGCGCTGCAACTGGCCGACCGGCAAGGCTTCGACGCGCTGATCCTGGCCCGGGGCGGCGGTTCCCTGGAA GACCTCTGGTGCTTCAACGAAGAAGCGGTGGCGCGCGCCGTGGCGGCCTGCGCCACGCCGATCGTCAGCGCG GTCGGCCACGAGACCGACGTATCGATCAGCGACTTCGTCGCCGACGTGCGCGCCCCGACGCCTTCGGCCGCC GCCGAACTGCTGGCGCCCAACGCCGGCGACCTGCAGCAGCGTCTCGACGGCCTGCGCCGGCGCCTGGTGCTG CGCATGCGCGACCAGTTGCTGCGCGAACGCCTGCGCCTGGAAGGCGTCGCCCGCCGCCTGCGCCATCCCGGA GAACGCCTGCGCCAGCAGGCGCAGCGCCTGGACGACCTGGACATGCGCCTGCGCCGTGCCTTCGAGCGCCAT CTGGCGGTCCGCCACGAACGCCTGGTCCGCCTGGAGACGCGTCTCGCCGCACAGCATCCGGGCCGCACCCTG GCGCTGCTCCGGCAGAAGCTCGACAGCCTCGCCGCGCGCCTGCCGCGCGCCGCCCGCGAGGTACTGAAGGAT CGTCGTCAGCACCTCGAAGGACTGGCGCAGACGCTCAACGTGGTCAGCCCGCTGGCGACCCTGGGCCGCGGC TACAGCATCCTCCTCGACGAGCGTGGCCGGGCGATCCGCGATGCCGGCCAGACCCAGCCGGGACAGCGCCTG AAGGCGCGCCTCGCGGAAGGCGAACTGGAGGTGCGGGTCGAGGACAACCACCGGACGCCGGTGACCCTGTCG CTGCTGGACTGA