ViewGene
Locus Name:
GeneID:
Location:

GeneID:1167
TrivialName: PA14_64580
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64580
PAO1 Ortholog Locus:PA4886
Sequence Length:1392
Protein Length:463
Start: 5752476
Stop: 5753867
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08271.1|AE004901_13 (AE004901) probable two-component sensor [Pseudomonas aeruginosa PAO1]
Identities = 458/463 (98%), Positives = 463/463 (100%)
Sequence:
GTGCCCGCCCGCCGCTCCCTGACCCTCTACGCGGCGCTGCTGTTCGCCGCGGTGGCGGCGCTGGTGGTCAGC
GCGGTCGGTTTCTACCTGTACCGCTCGGTGGAAGAGGCGATGCTGCGGCGCAGCGACGTGATGGTCGCCGGC
CGGGTCGAGCACTTCCGCAACCTGCTGCGCGACAACCTCACCCTGGCCGAGCTGAAGGCGCGCCCGCGTCTG
TTCGAGAACATGCTCGGTAACGAGCAGGACATCCTGCTCCTCGGTCAGCCCGGCGAGGCGCCGATCGTCGCG
GTCAACCCGCGCCACGAACGCCTGCCGTCGCTACGGGTGGTCGCCGCCGGCCAGGCGTTGAATCCGTCCGTC
GTGCACGCCGCGCTGACCCACGACGGCGTCCCGATGCGCGTGCTCGCCGCCGAGGTCCTGGTCGGCGGCCGC
GAGCCGTTGCAGATCACCGCCGCGCACCTGCTGCTGGGCGAGACGCGGATGCTCGCCCAGTACCGCGACCGG
GTCATCGCCGCCGTGCTGCTGGCGTTCCTCGGCACCGCCCTGCTCGGCTGGCTGGTCCTGCGCCACGGCCTG
CGCCCGCTGCGCACGCTGGCGGCGAAGGCGGCGGAGATCCATCCGACCAGCCTGGATACCCGCCTCGACGTC
GCCGCCGCGCCTGCCGAGTTGCAGCAGGTGGCACAGTCGTTCAACGCCATGCTCGAACGCCTCGACGACGGC
TACCAGCGCCTGCAGCAGTTCTCCGCCGACCTCGCCCATGAGATCCGCACGCCCATCGGTTCGCTGATGGGC
CACGGCCAGGTGGCCCTGCGCCAGCCACGCAGCAACGAGGAGTACCAGGCGCTGATCGCCTCCAACCAGGAA
GAGTTGGAGCGCATCGCACGGATGGTCGAGAGCATCCTGTTCCTCGCTCGCGCCGACGACGTGCGGGCAGCG
GTGGAGCGCAGCCGCCTGGACCTGGGCGAAGAACTGCGGCGCCAGGCGGAGTATTTCGAAGGGCTGGCCGAG
GAACGTGGGCTGAGCCTCGACATCCAGATCAGCGGCCAGCTACGCGCCGATCCGCAACTGTTCCGCCGGGCG
CTGAGCAACCTGCTGGCCAACGCCATCCGCTACGCCAGCGCCGAGAGCCTGATCGAAGTGCGCGGCCTGCGC
CGCTCGGGGGAATTCCTGCTGAGCGTGGAGAACGCCTGCGACAGGCTGCCGGCCGAGCCGCTGTCGCGCCTG
TTCGACCGCTTCTACCGTGGCGACGCCGCGCGCAGCGACGCCCAGTCCAGCGGTCTCGGCCTGGCCATCGTC
CAGGCGATCATGCGCCTGCACGGCGGCCGCGCCGAAGCGAGCGCCCCGGCTCCGGGACGCATCCGCTTCGAG
CTGGCGTTCCCGGCTCAGGACTGA
Translation:
MPARRSLTLYAALLFAAVAALVVSAVGFYLYRSVEEAMLRRSDVMVAGRVEHFRNLLRDNLTLAELKARPRL
FENMLGNEQDILLLGQPGEAPIVAVNPRHERLPSLRVVAAGQALNPSVVHAALTHDGVPMRVLAAEVLVGGR
EPLQITAAHLLLGETRMLAQYRDRVIAAVLLAFLGTALLGWLVLRHGLRPLRTLAAKAAEIHPTSLDTRLDV
AAAPAELQQVAQSFNAMLERLDDGYQRLQQFSADLAHEIRTPIGSLMGHGQVALRQPRSNEEYQALIASNQE
ELERIARMVESILFLARADDVRAAVERSRLDLGEELRRQAEYFEGLAEERGLSLDIQISGQLRADPQLFRRA
LSNLLANAIRYASAESLIEVRGLRRSGEFLLSVENACDRLPAEPLSRLFDRFYRGDAARSDAQSSGLGLAIV
QAIMRLHGGRAEASAPAPGRIRFELAFPAQD*
AnnotationID:1176GeneID:1167
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 12:12:24
Gene Name:
Confidence Code:3
GeneProduct:putative two-component sensor
Cell Localization:()
Synonyms:PA4886
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:putative heavy metal sensor histidine kinase
Functional Category Confidence Code:5
COGs:COG0642,smart00387
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57078.1| (AE016868) heavy metal sensor histidine kinase [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 462

 Score =  488 bits (1255), Expect = e-137
 Identities = 266/462 (57%), Positives = 336/462 (72%), Gaps = 2/462 (0%)

>emb|CAE34906.1| (BX640450) sensor kinase protein [Bordetella bronchiseptica]
          Length = 471

 Score =  393 bits (1010), Expect = e-108
 Identities = 220/457 (48%), Positives = 302/457 (66%), Gaps = 2/457 (0%)








 
Structural Features:
COG0642, BaeS, Signal transduction histidine kinase 
[Signal transduction mechanisms]
CD-Length = 336 residues,  89.3% aligned
Score =  122 bits (305), Expect = 1e-28
Identities = 95/308 (30%), Positives = 158/308 (51%), Gaps = 12/308 (3%)

smart00387, HATPase_c, Histidine kinase-like ATPases; Histidine kinase-, 
DNA gyrase B-, phytochrome-like ATPases.
CD-Length = 112 residues,  99.1% aligned
Score = 88.1 bits (218), Expect = 2e-18
Identities = 37/111 (33%), Positives = 54/111 (48%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14293




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19479




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35170




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1167_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1167
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2094
                           PA4886_tr
                           translation of PA4886
                           463
                           98.92
                           99.99
                           0
                           2264.0
     

     
     
69850
                           gb|AAG08271.1|AE004901_13
                           (AE004901) probable two-component sensor [Pseudomonas aeruginosa PAO1]
                           463
                           98.70
                           99.99
                           0
                           2261.0
     

     
     
69851
                           gb|AAO57078.1|
                           (AE016868) heavy metal sensor histidine kinase [Pseudomonas syringae pv. tomato str. DC3000]
                           466
                           57.29
                           72.10
                           7
                           1255.0
     

     
     
69852
                           emb|CAE34906.1|
                           (BX640450) sensor kinase protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           473
                           46.93
                           64.27
                           12
                           1007.0
     

     
     
69854
                           gb|AAR36339.1|
                           (AE017217) sensor histidine kinase [Geobacter sulfurreducens PCA]
                           515
                           33.59
                           48.54
                           92
                           578.0
     

     






      

          
GC ORFID: 44169How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4886Glimmer Score: 

          
Start: 5016157Stop: 5017548

          
Length: 1392


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4886 translation of PA4886Homolog Bit Score 876.0

          
Other Homologs:  psyr_15may02_Scaffold9_revised_gene8195 (ORF: BLASTX 493.0), psyr_15may02_Scaffold6_revised_gene6559 (ORF: BLASTX 206.0), t_PA1438 (ORF: BLASTX 200.0), t_PA4886 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCCCGCCCGCCGCTCCCTGACCCTCTACGCGGCGCTGCTGTTCGCCGCGGTGGCGGCGCTGGTGGTCAGC 
GCGGTCGGTTTCTACCTGTACCGCTCGGTGGAAGAGGCGATGCTGCGGCGCAGCGACGTGATGGTCGCCGGC 
CGGGTCGAGCACTTCCGCAACCTGCTGCGCGACAACCTCACCCTGGCCGAGCTGAAGGCGCGCCCGCGTCTG 
TTCGAGAACATGCTCGGTAACGAGCAGGACATCCTGCTCCTCGGTCAGCCCGGCGAGGCGCCGATCGTCGCG 
GTCAACCCGCGCCACGAACGCCTGCCGTCGCTACGGGTGGTCGCCGCCGGCCAGGCGTTGAATCCGTCCGTC 
GTGCACGCCGCGCTGACCCACGACGGCGTCCCGATGCGCGTGCTCGCCGCCGAGGTCCTGGTCGGCGGCCGC 
GAGCCGTTGCAGATCACCGCCGCGCACCTGCTGCTGGGCGAGACGCGGATGCTCGCCCAGTACCGCGACCGG 
GTCATCGCCGCCGTGCTGCTGGCGTTCCTCGGCACCGCCCTGCTCGGCTGGCTGGTCCTGCGCCACGGCCTG 
CGCCCGCTGCGCACGCTGGCGGCGAAGGCGGCGGAGATCCATCCGACCAGCCTGGATACCCGCCTCGACGTC 
GCCGCCGCGCCTGCCGAGTTGCAGCAGGTGGCACAGTCGTTCAACGCCATGCTCGAACGCCTCGACGACGGC 
TACCAGCGCCTGCAGCAGTTCTCCGCCGACCTCGCCCATGAGATCCGCACGCCCATCGGTTCGCTGATGGGC 
CACGGCCAGGTGGCCCTGCGCCAGCCACGCAGCAACGAGGAGTACCAGGCGCTGATCGCCTCCAACCAGGAA 
GAGTTGGAGCGCATCGCACGGATGGTCGAGAGCATCCTGTTCCTCGCTCGCGCCGACGACGTGCGGGCAGCG 
GTGGAGCGCAGCCGCCTGGACCTGGGCGAAGAACTGCGGCGCCAGGCGGAGTATTTCGAAGGGCTGGCCGAG 
GAACGTGGGCTGAGCCTCGACATCCAGATCAGCGGCCAGCTACGCGCCGATCCGCAACTGTTCCGCCGGGCG 
CTGAGCAACCTGCTGGCCAACGCCATCCGCTACGCCAGCGCCGAGAGCCTGATCGAAGTGCGCGGCCTGCGC 
CGCTCGGGGGAATTCCTGCTGAGCGTGGAGAACGCCTGCGACAGGCTGCCGGCCGAGCCGCTGTCGCGCCTG 
TTCGACCGCTTCTACCGTGGCGACGCCGCGCGCAGCGACGCCCAGTCCAGCGGTCTCGGCCTGGCCATCGTC 
CAGGCGATCATGCGCCTGCACGGCGGCCGCGCCGAAGCGAGCGCCCCGGCTCCGGGACGCATCCGCTTCGAG 
CTGGCGTTCCCGGCTCAGGACTGA