ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1166

TrivialName: PA14_31840

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_31840

PAO1 Ortholog Locus: PA2530

Sequence Length: 1326

Protein Length: 441

Start: 2770365

Stop: 2769040

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05918.1|AE004680_6 (AE004680) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 437/441 (99%), Positives = 439/441 (99%)

Sequence:

ATGCACCAGAGACAGCATTTCGAAGCCCTCGCCGAGGACCTGCGCCGGCATCTGGCCGAGGGCGAGGACTTC
ACCCTCTGGTACAGCGCCGAGGACTCCGAGTTCATCCGCTTCAACCGGGCGCGGGTGCGCCAGGCCGGCCGG
GTGCGCCAGGCCAGCGCGCTGCTCCGGCTGATCCGCGACGAACGCCAGGCGAGCCTCGACCTGACGCTCTCC
GGCGCGCCGGAAGAAGACCGCCAGCGTCTGGCCGAAGGCCTTCGGCAACTGCGCCAGAGCCTGGCCTGGATT
CCCGCCGATCCCTATCTGCTGCTCGACACCACGGCCTGGCAGCGAGAGAACCAGGACCTCAGCGCAGCGCCC
GACAGCGGCGCGCTGCTGGCCAGCCTCGAACGCCAGGCGCGCGACCTCGACCTGGTCGGCATCTATGCCGCC
GGACCGCTGTTCCGTGGCTTCGCCAACTCCTGGGGCGCCTTCGGCTGGCATGCCGGCAGCAGCTTCAACTTC
GACTGGAGCCTGTTCCACGGCAACGGCCAGGCGGTGAAGGCCGACTACGCCGGCCAGCGCTGGGACGACGAA
GCCTTCGCCCGGCGCTTCGAACAGGCCCGGGAGCAGCTCGGCCACCTGGGCAAGCCGCTGCGCCAGTTGCGC
CCCGGCGACTACCGCGCCTACCTGGCGCCGGCGGCGCTCGAAGAAGTCATGCAGATGCTCTGCTGGGGCGGT
TTATCCGCGCGCGCCCTGGCTACCGGCGAAAGCCCCCTGCAACGCCTGCAGAACGGCGACGCCCTGCTCAGC
CCGCTGCTGAACCTAGCCGAGCGCCCTGCCACCTCGCCCTCCCCGGCATTCAGCGCGGAAGGCTCGCCGCGC
GCCGAGGTCGAACTGGTCGGCAACGGCCGCCTGAGCGGACGCCTGGTGAGTTCGCGCAGCGCCCGCGAATAC
GGCCTGGTAGCCAATGGCGCCGGGGCCAACGAGGCGCCCACGGCGCTGGACATGGCCGGCGGCAGCCTGGAA
CAGGCGCGCATCCTCGAGGCCCTGGATACCGGCCTGTACATCGGCAACCTGTGGTACCTGAACTACTCGGAC
ATGCCCGCCGCGCGCCTGACCGGAATGACCCGCTTCGCCACCTTCTGGGTGGAGAACGGCCAGATCCGGGCG
CCGGTCAGCACCATGCGCTTCGACGACAGCCTGTACAGCTTCCTCGGTGCCCACCTGGAAGACCTCAGCCAC
GAGCGCGAACTGCGCCTGTCCAGCAATACCTACGGCGAACGCCAGACCGACTCGATGCACCTGCCGGGCGCG
TTGACCGGGCGCTTCACCCTCACGCTCTGA

Translation:

MHQRQHFEALAEDLRRHLAEGEDFTLWYSAEDSEFIRFNRARVRQAGRVRQASALLRLIRDERQASLDLTLS
GAPEEDRQRLAEGLRQLRQSLAWIPADPYLLLDTTAWQRENQDLSAAPDSGALLASLERQARDLDLVGIYAA
GPLFRGFANSWGAFGWHAGSSFNFDWSLFHGNGQAVKADYAGQRWDDEAFARRFEQAREQLGHLGKPLRQLR
PGDYRAYLAPAALEEVMQMLCWGGLSARALATGESPLQRLQNGDALLSPLLNLAERPATSPSPAFSAEGSPR
AEVELVGNGRLSGRLVSSRSAREYGLVANGAGANEAPTALDMAGGSLEQARILEALDTGLYIGNLWYLNYSD
MPAARLTGMTRFATFWVENGQIRAPVSTMRFDDSLYSFLGAHLEDLSHERELRLSSNTYGERQTDSMHLPGA
LTGRFTLTL*

AnnotationID:1175 GeneID:1166

AnnotatorUID: diggins

Modification Date/Time: 2005-03-06 18:06:58

Gene Name:

Confidence Code: 3

GeneProduct: putative protease

Cell Localization: ()

Synonyms: PA2530

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (20) Putative enzymes

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG0312

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

COG0312, TldD, Predicted Zn-dependent proteases and their inactivated homologs
CD-Length = 454 residues,  99.1% aligned
Score =  183 bits (465), Expect = 4e-47
Identities = 88/461 (19%), Positives = 149/461 (32%), Gaps = 36/461 (7%)

Genomic Context:

Comment:

ReferenceID:2335

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:19477

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:33085

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 1166_cdd.html

URL:

Homologs By Global Alignment

Gene ID:1166

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2093 PA2530_tr translation of PA2530 441 99.09 99.54 0 2263.0

69845 gb|AAG05918.1|AE004680_6 (AE004680) hypothetical protein PA2530 [Pseudomonas aeruginosa PAO1] 441 99.09 99.54 0 2263.0

69846 gb|AAN70517.1|AE016693_6 (AE016792) conserved hypothetical protein [Pseudomonas putida KT2440] 441 61.90 73.24 2 1371.0

69847 gb|AAO53952.1| (AE016857) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 442 61.08 73.30 2 1345.0

69848 gb|AAQ60366.1| (AE016919) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] 444 46.62 59.68 9 936.0

GC ORFID: `44168`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA2530`	Glimmer Score:
Start: `2183561`	Stop: `2184886`
Length: `1326`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA2530 translation of PA2530`	Homolog Bit Score `876.0`
Other Homologs: `psyr_15may02_Scaffold6_revised_gene6831 (ORF: BLASTX 528.0), t_PA2530 (ORF: GLIMMER)`
GC ORF Sequence
ATGCACCAGAGACAGCATTTCGAAGCCCTCGCCGAGGACCTGCGCCGGCATCTGGCCGAGGGCGAGGACTTC ACCCTCTGGTACAGCGCCGAGGACTCCGAGTTCATCCGCTTCAACCGGGCGCGGGTGCGCCAGGCCGGCCGG GTGCGCCAGGCCAGCGCGCTGCTCCGGCTGATCCGCGACGAACGCCAGGCGAGCCTCGACCTGACGCTCTCC GGCGCGCCGGAAGAAGACCGCCAGCGTCTGGCCGAAGGCCTTCGGCAACTGCGCCAGAGCCTGGCCTGGATT CCCGCCGATCCCTATCTGCTGCTCGACACCACGGCCTGGCAGCGAGAGAACCAGGACCTCAGCGCAGCGCCC GACAGCGGCGCGCTGCTGGCCAGCCTCGAACGCCAGGCGCGCGACCTCGACCTGGTCGGCATCTATGCCGCC GGACCGCTGTTCCGTGGCTTCGCCAACTCCTGGGGCGCCTTCGGCTGGCATGCCGGCAGCAGCTTCAACTTC GACTGGAGCCTGTTCCACGGCAACGGCCAGGCGGTGAAGGCCGACTACGCCGGCCAGCGCTGGGACGACGAA GCCTTCGCCCGGCGCTTCGAACAGGCCCGGGAGCAGCTCGGCCACCTGGGCAAGCCGCTGCGCCAGTTGCGC CCCGGCGACTACCGCGCCTACCTGGCGCCGGCGGCGCTCGAAGAAGTCATGCAGATGCTCTGCTGGGGCGGT TTATCCGCGCGCGCCCTGGCTACCGGCGAAAGCCCCCTGCAACGCCTGCAGAACGGCGACGCCCTGCTCAGC CCGCTGCTGAACCTAGCCGAGCGCCCTGCCACCTCGCCCTCCCCGGCATTCAGCGCGGAAGGCTCGCCGCGC GCCGAGGTCGAACTGGTCGGCAACGGCCGCCTGAGCGGACGCCTGGTGAGTTCGCGCAGCGCCCGCGAATAC GGCCTGGTAGCCAATGGCGCCGGGGCCAACGAGGCGCCCACGGCGCTGGACATGGCCGGCGGCAGCCTGGAA CAGGCGCGCATCCTCGAGGCCCTGGATACCGGCCTGTACATCGGCAACCTGTGGTACCTGAACTACTCGGAC ATGCCCGCCGCGCGCCTGACCGGAATGACCCGCTTCGCCACCTTCTGGGTGGAGAACGGCCAGATCCGGGCG CCGGTCAGCACCATGCGCTTCGACGACAGCCTGTACAGCTTCCTCGGTGCCCACCTGGAAGACCTCAGCCAC GAGCGCGAACTGCGCCTGTCCAGCAATACCTACGGCGAACGCCAGACCGACTCGATGCACCTGCCGGGCGCG TTGACCGGGCGCTTCACCCTCACGCTCTGA