ViewGene

Locus Name:
GeneID:
Location:

GeneID:1165
TrivialName: PA14_34420
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34420
PAO1 Ortholog Locus:PA2338
Sequence Length:1311
Protein Length:436
Start: 3062493
Stop: 3061183
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05726.1|AE004660_2 (AE004660) probable binding protein component of ABC maltose/mannitol transporter [Pseudomonas aeruginosa PAO1]
Identities = 435/436 (99%), Positives = 436/436 (100%)
Sequence:
ATGAACGACTCGATCAAGGCCTGCCTGGCCGCCGCCTGCCTCGCCCTGCCGCTGCTGGCCCAGGGCGCCGAG
ACCCTGACCATCGCCACGGTCAACAACAACGACATGATCCGCATGCAGCGCCTGTCCAAGGTGTTCGAGGAA
AGCCACCCGGACATCTCGCTGAAATGGGTGGTGCTCGAAGAGAACGTCCTGCGCCAGCGCCTGACCACCGAC
ATCGCCACCCAGGGCGGACAGTTCGACCTGCTCACCATCGGCATGTACGAAGCCGCGCTGTGGGGCGCCAAG
GGCTGGCTGGAGCCGATGAGCGGGCTGCCCGCCGACTACGCCCTGGACGACCTGTTGCCCTCGGTGCGCGAC
GGTCTCTCCGTCAAGGGCACGCTGTACGCCCTGCCGTTCTACGCCGAAGCCTCGATCACCTACTACCGCAAG
GACCTGTTCCAGCAGGCCGGGCTGCGGATGCCCGAGCAACCGACCTGGACCCAGCTCGGCGAGTTCGCCGCC
AGGCTCAACCGCCCGGACCAGGGCCAGTACGGCATCTGCCTGCGCGGCAAGGCCGGCTGGGGCGAGAACATG
GCGTTGATCGGCACCCTGGCCAACGCCTTCGGCGCACGCTGGTTCGACGAGCGATGGCAGCCCGAATTCAGC
GGCGGCGAATGGAAGAAGGCTCTCGACTTCTATGTCTCCACCCTCAAGCGGTACGGCCCGCCCGGCGCCTCC
AGCAACGGTTTCAACGAGAACCTGGCGCTGTTCAACAGCGGCAAGTGCGCGATCTGGGTGGACGCCAGCGTC
GCCGGTTCGTTCGTCACCGACAAGAGCCAGAGCAAGGTCGCCGACGCCACCGGCTTCGCCTTCGCCCCCCGG
GAAGTCACCGACAAGGGCGCCTCCTGGCTGTATTCCTGGGCCCTGGCGATTCCCGCCAGCTCGCGCGCCAAG
GACGCGGCGAAGGCCTTCGCCACCTGGGCCACCTCGCAGGCGTACGGCAAGCTGGTGGCGGACAGGGAAGGC
GTGGCCAACGTGCCGCCCGGCACCCGCGCCTCGACCTACAGCGAGGCCTACCTGGCCGCCGCGCCGTTCGCG
CGGGTCACCCTGGAATCGCTGAAGCGCGTCGATCCCAACCATCCGACGCTGAAGCCGGTGCCCTACGTCGGC
ATCCAGTTGGTCACCATCCCCGAGTTCCAGGCCATCGGCACCCAGGTCGGCAAGCTGTTCTCCGCCGCCCTC
ACCGGGCAGATGAGCAGCGACCAGGCGCTCGCCGCCGCGCAGCAGAGCACCGCCCGCGAGATGAAGCGCGCC
GGCTATCCGAAGTAG
Translation:
MNDSIKACLAAACLALPLLAQGAETLTIATVNNNDMIRMQRLSKVFEESHPDISLKWVVLEENVLRQRLTTD
IATQGGQFDLLTIGMYEAALWGAKGWLEPMSGLPADYALDDLLPSVRDGLSVKGTLYALPFYAEASITYYRK
DLFQQAGLRMPEQPTWTQLGEFAARLNRPDQGQYGICLRGKAGWGENMALIGTLANAFGARWFDERWQPEFS
GGEWKKALDFYVSTLKRYGPPGASSNGFNENLALFNSGKCAIWVDASVAGSFVTDKSQSKVADATGFAFAPR
EVTDKGASWLYSWALAIPASSRAKDAAKAFATWATSQAYGKLVADREGVANVPPGTRASTYSEAYLAAAPFA
RVTLESLKRVDPNHPTLKPVPYVGIQLVTIPEFQAIGTQVGKLFSAALTGQMSSDQALAAAQQSTAREMKRA
GYPK*
AnnotationID:1174GeneID:1165
AnnotatorUID: danlee
Modification Date/Time: 2005-09-26 15:03:56
Gene Name:
Confidence Code:3
GeneProduct:putative binding protein component of ABC maltose/mannitol transporter
Cell Localization:()
Synonyms:PA2338, mtlE
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:periplasmic sorbitol-binding protein
Functional Category Confidence Code:5
COGs:COG1653
Secondary Functional Category(ies):carbohydrate transport and metabolism
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAC04468.1| (AF007800) MtlE [Pseudomonas fluorescens]
          Length = 436

 Score =  695 bits (1793), Expect = 0.0

>gb|AAO56208.1| (AE016865) mannitol ABC transporter, periplasmic mannitol-binding
           protein [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 440

 Score =  650 bits (1678), Expect = 0.0
 Identities = 320/439 (72%), Positives = 363/439 (82%), Gaps = 3/439 (0%)

>gb|AAC45766.1| (AF018073) periplasmic sorbitol-binding protein; SmoE [Rhodobacter
           sphaeroides]
          Length = 436

 Score =  534 bits (1375), Expect = e-151
 Identities = 255/436 (58%), Positives = 312/436 (71%)
Structural Features:
COG1653, UgpB, ABC-type sugar transport system, periplasmic component 
[Carbohydrate transport and metabolism]
CD-Length = 433 residues,  96.5% aligned
Score =  150 bits (379), Expect = 3e-37
Identities = 104/432 (24%), Positives = 168/432 (38%), Gaps = 21/432 (4%)





Genomic Context:
Comment:
ReferenceID:2333
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19475
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32462
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1165_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1165

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2092 PA2338_tr translation of PA2338 436 99.77 99.99 0 2263.0
69829 gb|AAG05726.1|AE004660_2 (AE004660) probable binding protein component of ABC maltose/mannitol transporter [Pseudomonas aeruginosa PAO1] 436 99.77 99.99 0 2263.0
69830 gb|AAC04468.1| (AF007800) MtlE [Pseudomonas fluorescens] 436 77.06 85.32 0 1793.0
69831 gb|AAO53908.1| (AE016857) sugar ABC transporter, periplasmic sugar-binding protein, putative [Pseudomonas syringae pv. tomato str. DC3000] 438 73.28 84.47 2 1718.0
69832 gb|AAO56208.1| (AE016865) mannitol ABC transporter, periplasmic mannitol-binding protein [Pseudomonas syringae pv. tomato str. DC3000] 441 73.24 83.21 6 1685.0
GC ORFID: 44167How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2338Glimmer Score:
Start: 1891423Stop: 1892733
Length: 1311
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA2338 translation of PA2338Homolog Bit Score 876.0
Other Homologs: psyr_15may02_Scaffold6_revised_gene6886 (ORF: BLASTX 665.0), psyr_15may02_Scaffold2_revised_gene3065 (ORF: BLASTX 641.0), t_PA2338 (ORF: GLIMMER)
GC ORF Sequence
ATGAACGACTCGATCAAGGCCTGCCTGGCCGCCGCCTGCCTCGCCCTGCCGCTGCTGGCCCAGGGCGCCGAG
ACCCTGACCATCGCCACGGTCAACAACAACGACATGATCCGCATGCAGCGCCTGTCCAAGGTGTTCGAGGAA
AGCCACCCGGACATCTCGCTGAAATGGGTGGTGCTCGAAGAGAACGTCCTGCGCCAGCGCCTGACCACCGAC
ATCGCCACCCAGGGCGGACAGTTCGACCTGCTCACCATCGGCATGTACGAAGCCGCGCTGTGGGGCGCCAAG
GGCTGGCTGGAGCCGATGAGCGGGCTGCCCGCCGACTACGCCCTGGACGACCTGTTGCCCTCGGTGCGCGAC
GGTCTCTCCGTCAAGGGCACGCTGTACGCCCTGCCGTTCTACGCCGAAGCCTCGATCACCTACTACCGCAAG
GACCTGTTCCAGCAGGCCGGGCTGCGGATGCCCGAGCAACCGACCTGGACCCAGCTCGGCGAGTTCGCCGCC
AGGCTCAACCGCCCGGACCAGGGCCAGTACGGCATCTGCCTGCGCGGCAAGGCCGGCTGGGGCGAGAACATG
GCGTTGATCGGCACCCTGGCCAACGCCTTCGGCGCACGCTGGTTCGACGAGCGATGGCAGCCCGAATTCAGC
GGCGGCGAATGGAAGAAGGCTCTCGACTTCTATGTCTCCACCCTCAAGCGGTACGGCCCGCCCGGCGCCTCC
AGCAACGGTTTCAACGAGAACCTGGCGCTGTTCAACAGCGGCAAGTGCGCGATCTGGGTGGACGCCAGCGTC
GCCGGTTCGTTCGTCACCGACAAGAGCCAGAGCAAGGTCGCCGACGCCACCGGCTTCGCCTTCGCCCCCCGG
GAAGTCACCGACAAGGGCGCCTCCTGGCTGTATTCCTGGGCCCTGGCGATTCCCGCCAGCTCGCGCGCCAAG
GACGCGGCGAAGGCCTTCGCCACCTGGGCCACCTCGCAGGCGTACGGCAAGCTGGTGGCGGACAGGGAAGGC
GTGGCCAACGTGCCGCCCGGCACCCGCGCCTCGACCTACAGCGAGGCCTACCTGGCCGCCGCGCCGTTCGCG
CGGGTCACCCTGGAATCGCTGAAGCGCGTCGATCCCAACCATCCGACGCTGAAGCCGGTGCCCTACGTCGGC
ATCCAGTTGGTCACCATCCCCGAGTTCCAGGCCATCGGCACCCAGGTCGGCAAGCTGTTCTCCGCCGCCCTC
ACCGGGCAGATGAGCAGCGACCAGGCGCTCGCCGCCGCGCAGCAGAGCACCGCCCGCGAGATGAAGCGCGCC
GGCTATCCGAAGTAG