ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1164

TrivialName: PA14_49170

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_49170

PAO1 Ortholog Locus: PA1180

Sequence Length: 1347

Protein Length: 448

Start: 4370651

Stop: 4369305

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG04569.1|AE004548_3 (AE004548) two-component sensor PhoQ [Pseudomonas aeruginosa PAO1] Identities = 448/448 (100%), Positives = 448/448 (100%)

Sequence:

GTGATCCGTTCCCTGCGCATCCGCCTGATGCTCGGCGCCGCCGCCCTGGCGGTGCTGTTCATGCTGGCGCTG
CTGCCGGCCCTGCAGCGGGCCTTCGGCATCGCCCTGGAGAACACCATCGAGCAGCGCCTGGCCGCCGACGTG
GCGACCCTGGTCTCGGCGGCGCGGGTAGAGAAGGGCCGCCTGGTGATGCCCGAGCACCTGCCGGTGGAGGAG
TTCAACCTGCCGGAGGCCAAGGTCCTCGGCTATATCTACGACCAGAATGGCGATCTGCTCTGGCGCTCCACC
TCGGCGGCCGACGAGTCGATCAACTACACGCCGCGCTACGACGGCCGCGGCAACGAATTCCACACCACCCGC
GACGCGAAGGGCGAGGAGTTCTTCGTGTTCGACGTCGAGATCGACCTGCTGCGCGGCAAGCAGGCGGCCTAC
AGCATCGTCACCATGCAATCGGTCAGCGAGTTCGAGAGCCTGCTCAAGGGGTTCCGCGAGCAACTCTACCTG
TGGCTCGGCGGCGCCCTGCTGGTCTTGCTCGGGCTGCTCTGGCTAGGTCTGACCTGGGGCTTCCGGGCGATG
CGCGGGTTGAGTTCCGAGCTGGACCAGATCGAATCCGGCGAGCGCGAGAGCCTGAGCGAGGAGCATCCGCGC
GAGCTGCTGCGCCTGACCCACTCGCTGAACCGCCTGTTGCGCAGCGAGCACAAGCAGCGCGAGCGCTACCGC
CACTCCCTCGGCGACCTGGCGCACAGTCTGAAGACGCCGCTGGCGGTCTTGCAGGGGGTCGGCGACCAGCTC
GCCGAGGAGCCCGGCAACCGCGAGCAGGTGCGGGTGCTACAGGGCCAGATCGAGCGCATGAGCCAGCAGATA
GGCTATCAGTTGCAGCGCGCCAGCCTGCGCAAGAGCGGCCTGGTACGCCATCGCGAGCAACTGGCGCCGCTG
GTGGAGACCCTGTGCGACGCGCTGGACAAGGTCTATCGCGACAAGCGGGTAAGCCTGCAGCGGGACTTCTCG
CCGTCCTTCAGCGTGCCGGTGGAGCGCGGCGCGCTGCTGGAACTGCTCGGCAACCTGCTGGAGAACGCCTAT
CGCCTGTGCCTGGGCCGGGTCCGCGTGGGCGCCCGGCTGGGGCCGGGTTACTCGGAGCTGTGGGTCGAGGAC
GATGGTCCCGGAGTGCCTGCCGAACAGCGCGCACGAATCATCCGCCGCGGCGAGCGCGCCGATACCCAGCAC
CCGGGGCAGGGCATCGGCCTGGCCGTGGCGCTGGACATCATCGAGAGCTACGACGGCGAACTGAGCCTGGAC
GATTCCGAGCTGGGCGGCGCCTGCTTCCGCATACGTTTCGCTACAGTCTGA

Translation:

MIRSLRIRLMLGAAALAVLFMLALLPALQRAFGIALENTIEQRLAADVATLVSAARVEKGRLVMPEHLPVEE
FNLPEAKVLGYIYDQNGDLLWRSTSAADESINYTPRYDGRGNEFHTTRDAKGEEFFVFDVEIDLLRGKQAAY
SIVTMQSVSEFESLLKGFREQLYLWLGGALLVLLGLLWLGLTWGFRAMRGLSSELDQIESGERESLSEEHPR
ELLRLTHSLNRLLRSEHKQRERYRHSLGDLAHSLKTPLAVLQGVGDQLAEEPGNREQVRVLQGQIERMSQQI
GYQLQRASLRKSGLVRHREQLAPLVETLCDALDKVYRDKRVSLQRDFSPSFSVPVERGALLELLGNLLENAY
RLCLGRVRVGARLGPGYSELWVEDDGPGVPAEQRARIIRRGERADTQHPGQGIGLAVALDIIESYDGELSLD
DSELGGACFRIRFATV*

AnnotationID:1173 GeneID:1164

AnnotatorUID: danlee

Modification Date/Time: 2004-02-03 11:11:13

Gene Name: phoQ

Confidence Code: 1

GeneProduct: two-component sensor PhoQ

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (28) Two-component regulatory systems

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Two-component System

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:14291

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:16964

Author/Investigator(s):

Title:

PubMed:

MedLine:

Source:

NCBI Conserved Domain Search

Reference Type: Blast (text/plain)

Data: phoQ_CDS.cgi

URL:

ReferenceID:19473

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:1164

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2091 PA1180_tr translation of PA1180 448 99.99 99.99 0 2263.0

69823 gb|AAG04569.1|AE004548_3 (AE004548) two-component sensor PhoQ [Pseudomonas aeruginosa PAO1] 448 99.77 99.99 0 2260.0

69824 gb|AAN66811.1|AE016310_3 (AE016778) sensor protein PhoQ [Pseudomonas putida KT2440] 448 66.74 78.34 0 1506.0

69825 gb|AAP29968.1| (AY214161) sensor protein PhoQ [Pseudomonas putida] 448 65.40 75.66 9 1456.0

69826 gb|AAO55200.1| (AE016861) sensor protein PhoQ [Pseudomonas syringae pv. tomato str. DC3000] 448 64.73 76.33 0 1448.0

GC ORFID: `44166`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA1180`	Glimmer Score:
Start: `583257`	Stop: `584603`
Length: `1347`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA1180 translation of PA1180`	Homolog Bit Score `876.0`
Other Homologs: `psyr_15may02_Scaffold5_revised_gene6445 (ORF: BLASTX 564.0), t_PA1180 (ORF: GLIMMER)`
GC ORF Sequence
GTGATCCGTTCCCTGCGCATCCGCCTGATGCTCGGCGCCGCCGCCCTGGCGGTGCTGTTCATGCTGGCGCTG CTGCCGGCCCTGCAGCGGGCCTTCGGCATCGCCCTGGAGAACACCATCGAGCAGCGCCTGGCCGCCGACGTG GCGACCCTGGTCTCGGCGGCGCGGGTAGAGAAGGGCCGCCTGGTGATGCCCGAGCACCTGCCGGTGGAGGAG TTCAACCTGCCGGAGGCCAAGGTCCTCGGCTATATCTACGACCAGAATGGCGATCTGCTCTGGCGCTCCACC TCGGCGGCCGACGAGTCGATCAACTACACGCCGCGCTACGACGGCCGCGGCAACGAATTCCACACCACCCGC GACGCGAAGGGCGAGGAGTTCTTCGTGTTCGACGTCGAGATCGACCTGCTGCGCGGCAAGCAGGCGGCCTAC AGCATCGTCACCATGCAATCGGTCAGCGAGTTCGAGAGCCTGCTCAAGGGGTTCCGCGAGCAACTCTACCTG TGGCTCGGCGGCGCCCTGCTGGTCTTGCTCGGGCTGCTCTGGCTAGGTCTGACCTGGGGCTTCCGGGCGATG CGCGGGTTGAGTTCCGAGCTGGACCAGATCGAATCCGGCGAGCGCGAGAGCCTGAGCGAGGAGCATCCGCGC GAGCTGCTGCGCCTGACCCACTCGCTGAACCGCCTGTTGCGCAGCGAGCACAAGCAGCGCGAGCGCTACCGC CACTCCCTCGGCGACCTGGCGCACAGTCTGAAGACGCCGCTGGCGGTCTTGCAGGGGGTCGGCGACCAGCTC GCCGAGGAGCCCGGCAACCGCGAGCAGGTGCGGGTGCTACAGGGCCAGATCGAGCGCATGAGCCAGCAGATA GGCTATCAGTTGCAGCGCGCCAGCCTGCGCAAGAGCGGCCTGGTACGCCATCGCGAGCAACTGGCGCCGCTG GTGGAGACCCTGTGCGACGCGCTGGACAAGGTCTATCGCGACAAGCGGGTAAGCCTGCAGCGGGACTTCTCG CCGTCCTTCAGCGTGCCGGTGGAGCGCGGCGCGCTGCTGGAACTGCTCGGCAACCTGCTGGAGAACGCCTAT CGCCTGTGCCTGGGCCGGGTCCGCGTGGGCGCCCGGCTGGGGCCGGGTTACTCGGAGCTGTGGGTCGAGGAC GATGGTCCCGGAGTGCCTGCCGAACAGCGCGCACGAATCATCCGCCGCGGCGAGCGCGCCGATACCCAGCAC CCGGGGCAGGGCATCGGCCTGGCCGTGGCGCTGGACATCATCGAGAGCTACGACGGCGAACTGAGCCTGGAC GATTCCGAGCTGGGCGGCGCCTGCTTCCGCATACGTTTCGCTACAGTCTGA