ViewGene

Locus Name:
GeneID:
Location:

GeneID:1162
TrivialName: PA14_72710
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72710
PAO1 Ortholog Locus:PA5510
Sequence Length:1350
Protein Length:449
Start: 6474974
Stop: 6476323
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08895.1|AE004963_8 (AE004963) probable transporter [Pseudomonas aeruginosa PAO1]
Identities = 449/449 (100%), Positives = 449/449 (100%)
Sequence:
ATGGCCATCGAACAGTTCGGATACCGGCAACAGCTGCGCCGCAGCCTGTCCCTGAGCGACCTGATCATCTAC
GGGATGATCTTCATGATCCCCATCGCCCCGTTCGGGGTCTACGGCTGGGTCCATGCCGACGCCCACGGCATG
GTGCCGATGGCCTACCTGGTGGGCATGCTGGCGATGCTCTTCACCGCCCTCAGCTACGGAGCCATGGCCAAG
GCCTTTCCGATTGCCGGCTCGGTGTATTCCTATGCGCAGCGCGGCATCCACCCCCATGTCGGCTTCATCGCC
GGCTGGGTGCTGCTGCTCGACTACCTGCTGATCCCGCCGCTGCTCTACGTGTTCAGCGCACTGGCGCTGAAC
CACTTGTTCCCGGCGATCCCCAAGCTGGCCTGGATGCTGCTGTTCCTGGTCTCGGCGACCCTGGTCAACCTG
CGCGGCATCACCTTCGCCGCCCGCGCCAACCTGTTGTTCCTGATCGGAGAGCTGGTGGTCCTGGCGATCTTC
CTGGTGGTCGGCTACCAGGCGCTGGAAGGCGGCCTGGGCAACGGCCGGCTGACCCTCGAACCGCTGTATCGC
CCGGAGGCCTTCGATCTCGGCCTGGTGATGAAGGCCGCCTCGATCGCCGTACTGTCGTTCCTCGGCTTCGAC
GCCATCTCCACCCTCGCCGAGGAGGTCAAGGGCGATCCCGCGCGACAGATCGGCCGCGCCGCGCTGATCGCG
CTGTTCATCATGGGCGGCATCTTCATCGCGCAGACCTGGCTGGCCACCGACCTCGCCGCCGGGATGAACTTC
AAGTCGGCGGACACCGCCTTCTACGAGATCGCCGAAGCGGCCGGTGGCCAGTGGCTGTCGATGCTGACCGCG
GTAGCCACCGCGCTGGCCTGGGGTGTCACCGTGTCGATCACCTCGCAGGCAGCGGTCTCGCGCCTGCTCTAC
TCGATGGCCCGCGACGGCAGGCTGCCGCGCGCGCTGGCCAGGGTCCATCCGCGCTACCAGACGCCGCACGTC
AGCCTGTACCTGGTGGCGGTGCTGTCGCTGGGAATCGGCTGGGCCTTCCTCGACGCACCGGACGTGCTCACC
TCACTGGTGAACTTCGGTGCCCTCACCGGCTTCTGCCTGCTGCACCTGAGCGTGATCAACCACTACTACCGC
CGCCAGCGCTCCGGCCAGTGGTTGCGGCATCTACTGTTCCCGCTGGTGGGCCTGGCGATCATCGCCTACGTG
CTGTACAGCATGAGCCTCGACGCACAGTTGCTCGGACTGGCCTGGATCGCGGTGGGGCTGGTCTACCTGGCG
TTGCTGCAACGCGGCGGGCGCCAGGCGCCAACGGAGTTGGCCAAGGATCTCTGA
Translation:
MAIEQFGYRQQLRRSLSLSDLIIYGMIFMIPIAPFGVYGWVHADAHGMVPMAYLVGMLAMLFTALSYGAMAK
AFPIAGSVYSYAQRGIHPHVGFIAGWVLLLDYLLIPPLLYVFSALALNHLFPAIPKLAWMLLFLVSATLVNL
RGITFAARANLLFLIGELVVLAIFLVVGYQALEGGLGNGRLTLEPLYRPEAFDLGLVMKAASIAVLSFLGFD
AISTLAEEVKGDPARQIGRAALIALFIMGGIFIAQTWLATDLAAGMNFKSADTAFYEIAEAAGGQWLSMLTA
VATALAWGVTVSITSQAAVSRLLYSMARDGRLPRALARVHPRYQTPHVSLYLVAVLSLGIGWAFLDAPDVLT
SLVNFGALTGFCLLHLSVINHYYRRQRSGQWLRHLLFPLVGLAIIAYVLYSMSLDAQLLGLAWIAVGLVYLA
LLQRGGRQAPTELAKDL*
AnnotationID:1171GeneID:1162
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 09:09:32
Gene Name:
Confidence Code:3
GeneProduct:putative amino acid transporter
Cell Localization:()
Synonyms:PA5510
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0531
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAD65118.1| (AL935260) amino acid transport protein [Lactobacillus plantarum
           WCFS1]
          Length = 455

 Score =  431 bits (1109), Expect = e-120
 Identities = 207/434 (47%), Positives = 311/434 (71%), Gaps = 3/434 (0%)

>gb|AAM37834.1| (AE011940) amino acid transporter [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 460

 Score =  409 bits (1052), Expect = e-113
 Identities = 212/441 (48%), Positives = 303/441 (68%), Gaps = 8/441 (1%)

Structural Features:
COG0531, PotE, Amino acid transporters 
[Amino acid transport and metabolism]
CD-Length = 466 residues,  93.8% aligned
Score =  132 bits (332), Expect = 1e-31
Identities = 128/443 (28%), Positives = 223/443 (50%), Gaps = 25/443 (5%)
Genomic Context:
Comment:
ReferenceID:2327
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19469
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33280
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1162_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1162

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2089 PA5510_tr translation of PA5510 449 99.99 99.99 0 2266.0
69813 gb|AAG08895.1|AE004963_8 (AE004963) probable transporter [Pseudomonas aeruginosa PAO1] 449 99.99 99.99 0 2266.0
69815 gb|AAM37834.1| (AE011940) amino acid transporter [Xanthomonas axonopodis pv. citri str. 306] 466 46.35 65.87 23 1058.0
69817 gb|AAO25533.2| (AY183119) amino acid transporter [Xanthomonas oryzae pv. oryzae] 465 46.02 66.02 23 1036.0
69816 gb|AAM42091.1| (AE012394) amino acid transporter [Xanthomonas campestris pv. campestris str. ATCC 33913] 465 45.80 66.23 22 1057.0
GC ORFID: 44164How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5510Glimmer Score:
Start: 5738663Stop: 5740012
Length: 1350
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5510 translation of PA5510Homolog Bit Score 877.0
Other Homologs: t_PA5510 (ORF: GLIMMER)
GC ORF Sequence
ATGGCCATCGAACAGTTCGGATACCGGCAACAGCTGCGCCGCAGCCTGTCCCTGAGCGACCTGATCATCTAC
GGGATGATCTTCATGATCCCCATCGCCCCGTTCGGGGTCTACGGCTGGGTCCATGCCGACGCCCACGGCATG
GTGCCGATGGCCTACCTGGTGGGCATGCTGGCGATGCTCTTCACCGCCCTCAGCTACGGAGCCATGGCCAAG
GCCTTTCCGATTGCCGGCTCGGTGTATTCCTATGCGCAGCGCGGCATCCACCCCCATGTCGGCTTCATCGCC
GGCTGGGTGCTGCTGCTCGACTACCTGCTGATCCCGCCGCTGCTCTACGTGTTCAGCGCACTGGCGCTGAAC
CACTTGTTCCCGGCGATCCCCAAGCTGGCCTGGATGCTGCTGTTCCTGGTCTCGGCGACCCTGGTCAACCTG
CGCGGCATCACCTTCGCCGCCCGCGCCAACCTGTTGTTCCTGATCGGAGAGCTGGTGGTCCTGGCGATCTTC
CTGGTGGTCGGCTACCAGGCGCTGGAAGGCGGCCTGGGCAACGGCCGGCTGACCCTCGAACCGCTGTATCGC
CCGGAGGCCTTCGATCTCGGCCTGGTGATGAAGGCCGCCTCGATCGCCGTACTGTCGTTCCTCGGCTTCGAC
GCCATCTCCACCCTCGCCGAGGAGGTCAAGGGCGATCCCGCGCGACAGATCGGCCGCGCCGCGCTGATCGCG
CTGTTCATCATGGGCGGCATCTTCATCGCGCAGACCTGGCTGGCCACCGACCTCGCCGCCGGGATGAACTTC
AAGTCGGCGGACACCGCCTTCTACGAGATCGCCGAAGCGGCCGGTGGCCAGTGGCTGTCGATGCTGACCGCG
GTAGCCACCGCGCTGGCCTGGGGTGTCACCGTGTCGATCACCTCGCAGGCAGCGGTCTCGCGCCTGCTCTAC
TCGATGGCCCGCGACGGCAGGCTGCCGCGCGCGCTGGCCAGGGTCCATCCGCGCTACCAGACGCCGCACGTC
AGCCTGTACCTGGTGGCGGTGCTGTCGCTGGGAATCGGCTGGGCCTTCCTCGACGCACCGGACGTGCTCACC
TCACTGGTGAACTTCGGTGCCCTCACCGGCTTCTGCCTGCTGCACCTGAGCGTGATCAACCACTACTACCGC
CGCCAGCGCTCCGGCCAGTGGTTGCGGCATCTACTGTTCCCGCTGGTGGGCCTGGCGATCATCGCCTACGTG
CTGTACAGCATGAGCCTCGACGCACAGTTGCTCGGACTGGCCTGGATCGCGGTGGGGCTGGTCTACCTGGCG
TTGCTGCAACGCGGCGGGCGCCAGGCGCCAACGGAGTTGGCCAAGGATCTCTGA