ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1161

TrivialName: PA14_64750

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_64750

PAO1 Ortholog Locus: PA4900

Sequence Length: 1341

Protein Length: 446

Start: 5770059

Stop: 5768719

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG08285.1|AE004903_3 (AE004903) probable MFS transporter [Pseudomonas aeruginosa PAO1] Identities = 446/446 (100%), Positives = 446/446 (100%)

Sequence:

ATGAACAGGCAATCCGCTGCGGCGGTGATCGACGCTGCCCGCTTTAACCGTACTCACTGGCTGATCCTCGGC
TGGGGGTGTTTCATCATGCTGTTCGACGGCTACGACATGGTCATCTACGGCTCGGTGGTGCCACGCCTGATG
CAGGAGTGGCAGCTGAGCCCGGTGCAGGCCGGCACCCTCGGCAGTTGCGCGCTGTTCGGCATGCTCTTCGGC
GGCACCCTGCTGGCGCCGCTGGCGGACCGTTTCGGCCGGCGCCGCCTGGTGATCGCCACCACCCTGCTGGCG
AGCCTCGCCGCCTTCCTCACCGGGCACGCCCGCGACCCGCTGGAACTGGGCGCCGGACGCTTCTTCACCGGC
CTGGCACTGGGCGCGCTGGTGCCCAGCGCGATCAACCTGATCAGCGAATTCGCCCCGGCCGGGCGGCGCAGC
ACCCTGGTCACGGTGATGTCGGCCTTCTACTCGGTGGGCGCGGTGCTCTCGGCGCTACTGGCGATCGCCATG
ATCCCCGCCTGGGGCTGGCAATCGGTGTTCTACGTGGCGGTGCTGCCGGTACTGGCGGTGCCGCTGATGTTG
CGCTGGTTGCCGGAGTCGGCGGCGTTCCTCGAACTCAAGGGCCGCCGCGCCGAACTGGACGCGCTGCTGCGC
AAGGTCGATCCCGACTACCGGCCCGGCGCCGAGCGGGCGAACGCTGTCGCGGCCGAAGCGCCGAGCGGACGG
GTCGCCCAGTTGTTCGAGGGGCGCCAGGCAGTGGGCACCCTGCTGCTGTGGGTGGCCTTCGCCATGTGCATG
CTGATGAGCTACGGGCTCAACACCTGGTTGCCGAAGCTGATGGCCGGCGGCGGCTACGCCCTCGGTTCGAGC
CTGGCGTTCCTCGTCACTCTGAATGTCGGGGCGACCCTCGGCGCGTTGTTCGGCGGCTGGCTGGCCGACCGC
CTCGGCGCCGGCCGCACCCTGGTGCTGTTCTTCGCCCTGGCCGCGGCCTCCCTGGCGGCCCTCGGCCTGGGG
CCAGGCCCCTGGCTGCTCAACGGCCTGCTGGTGGTGGCCGGCGCCACCACCATCGGCACCCTGGCGGTGATC
CATGCCTACGCCGCGCAGTTCTATCCGGCCTGGGTGCGCTCCACCGGGGTCGGCTGGGCCGCCGGTGTCGGC
CGCCTCGGCGCCATCGCCGGGCCGATGCTCGGCGGCAGCCTGCTGGCCCTGGAGCTGCCGTTCCAGCAGAAC
TTCCTGGCCTTCGCCGCGCCTGGCGTGATCGGCGCGCTGGCGATCGCCTGCATCCACCTGCGGCCGCGCGTG
CCGGCGGAAGCGTCCGTCGACGCGACGGCGAAGAAACCCCTGTGA

Translation:

MNRQSAAAVIDAARFNRTHWLILGWGCFIMLFDGYDMVIYGSVVPRLMQEWQLSPVQAGTLGSCALFGMLFG
GTLLAPLADRFGRRRLVIATTLLASLAAFLTGHARDPLELGAGRFFTGLALGALVPSAINLISEFAPAGRRS
TLVTVMSAFYSVGAVLSALLAIAMIPAWGWQSVFYVAVLPVLAVPLMLRWLPESAAFLELKGRRAELDALLR
KVDPDYRPGAERANAVAAEAPSGRVAQLFEGRQAVGTLLLWVAFAMCMLMSYGLNTWLPKLMAGGGYALGSS
LAFLVTLNVGATLGALFGGWLADRLGAGRTLVLFFALAAASLAALGLGPGPWLLNGLLVVAGATTIGTLAVI
HAYAAQFYPAWVRSTGVGWAAGVGRLGAIAGPMLGGSLLALELPFQQNFLAFAAPGVIGALAIACIHLRPRV
PAEASVDATAKKPL*

AnnotationID:1170 GeneID:1161

AnnotatorUID: diggins

Modification Date/Time: 2004-11-04 06:06:00

Gene Name:

Confidence Code: 3

GeneProduct: putative MFS transporter

Cell Localization: ()

Synonyms: benK

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (27) Transport of small molecules

Alternate Gene Product Name: putative benzoate transport protein

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies): carbohydrate transport and metabolism

EC Number:

Status: ACTIVE

Pathway:

Homology:

>gb|AAN68773.1|AE016509_6 (AE016785) benzoate MFS transporter BenK [Pseudomonas putida
           KT2440]
          Length = 442

 Score =  404 bits (1037), Expect = e-112
 Identities = 208/421 (49%), Positives = 282/421 (66%), Gaps = 2/421 (0%)

Structural Features:

Genomic Context:

Comment:

ReferenceID:2325

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:19467

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:35159

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 1161_cdd.html

URL:

Homologs By Global Alignment

Gene ID:1161

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2088 PA4900_tr translation of PA4900 446 99.99 99.99 0 2266.0

69808 gb|AAG08285.1|AE004903_3 (AE004903) probable MFS transporter [Pseudomonas aeruginosa PAO1] 446 99.99 99.99 0 2266.0

69809 gb|AAF63452.1|AF218267_9 (AF218267) benzoate transport protein [Pseudomonas putida] 448 46.87 63.83 7 1038.0

69811 gb|AAP44250.1| (AY208917) benzoate transporter protein [Pseudomonas sp. ND6] 455 46.81 62.19 15 1025.0

69810 gb|AAN68773.1|AE016509_6 (AE016785) benzoate MFS transporter BenK [Pseudomonas putida KT2440] 453 46.57 63.35 18 1034.0

GC ORFID: `44163`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA4900`	Glimmer Score:
Start: `5033740`	Stop: `5032400`
Length: `1341`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA4900 translation of PA4900`	Homolog Bit Score `877.0`
Other Homologs: `t_PA4900 (ORF: GLIMMER)`
GC ORF Sequence
ATGAACAGGCAATCCGCTGCGGCGGTGATCGACGCTGCCCGCTTTAACCGTACTCACTGGCTGATCCTCGGC TGGGGGTGTTTCATCATGCTGTTCGACGGCTACGACATGGTCATCTACGGCTCGGTGGTGCCACGCCTGATG CAGGAGTGGCAGCTGAGCCCGGTGCAGGCCGGCACCCTCGGCAGTTGCGCGCTGTTCGGCATGCTCTTCGGC GGCACCCTGCTGGCGCCGCTGGCGGACCGTTTCGGCCGGCGCCGCCTGGTGATCGCCACCACCCTGCTGGCG AGCCTCGCCGCCTTCCTCACCGGGCACGCCCGCGACCCGCTGGAACTGGGCGCCGGACGCTTCTTCACCGGC CTGGCACTGGGCGCGCTGGTGCCCAGCGCGATCAACCTGATCAGCGAATTCGCCCCGGCCGGGCGGCGCAGC ACCCTGGTCACGGTGATGTCGGCCTTCTACTCGGTGGGCGCGGTGCTCTCGGCGCTACTGGCGATCGCCATG ATCCCCGCCTGGGGCTGGCAATCGGTGTTCTACGTGGCGGTGCTGCCGGTACTGGCGGTGCCGCTGATGTTG CGCTGGTTGCCGGAGTCGGCGGCGTTCCTCGAACTCAAGGGCCGCCGCGCCGAACTGGACGCGCTGCTGCGC AAGGTCGATCCCGACTACCGGCCCGGCGCCGAGCGGGCGAACGCTGTCGCGGCCGAAGCGCCGAGCGGACGG GTCGCCCAGTTGTTCGAGGGGCGCCAGGCAGTGGGCACCCTGCTGCTGTGGGTGGCCTTCGCCATGTGCATG CTGATGAGCTACGGGCTCAACACCTGGTTGCCGAAGCTGATGGCCGGCGGCGGCTACGCCCTCGGTTCGAGC CTGGCGTTCCTCGTCACTCTGAATGTCGGGGCGACCCTCGGCGCGTTGTTCGGCGGCTGGCTGGCCGACCGC CTCGGCGCCGGCCGCACCCTGGTGCTGTTCTTCGCCCTGGCCGCGGCCTCCCTGGCGGCCCTCGGCCTGGGG CCAGGCCCCTGGCTGCTCAACGGCCTGCTGGTGGTGGCCGGCGCCACCACCATCGGCACCCTGGCGGTGATC CATGCCTACGCCGCGCAGTTCTATCCGGCCTGGGTGCGCTCCACCGGGGTCGGCTGGGCCGCCGGTGTCGGC CGCCTCGGCGCCATCGCCGGGCCGATGCTCGGCGGCAGCCTGCTGGCCCTGGAGCTGCCGTTCCAGCAGAAC TTCCTGGCCTTCGCCGCGCCTGGCGTGATCGGCGCGCTGGCGATCGCCTGCATCCACCTGCGGCCGCGCGTG CCGGCGGAAGCGTCCGTCGACGCGACGGCGAAGAAACCCCTGTGA