ViewGene
Locus Name:
GeneID:
Location:

GeneID:1159
TrivialName: PA14_19110
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_19110
PAO1 Ortholog Locus:PA3478
Sequence Length:1281
Protein Length:426
Start: 1649585
Stop: 1650865
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06866.1|AE004768_11 (AE004768) rhamnosyltransferase chain B [Pseudomonas aeruginosa PAO1]
Identities = 426/426 (100%), Positives = 426/426 (100%)
Sequence:
ATGCACGCCATCCTCATCGCCATCGGCTCGGCCGGCGACGTATTTCCCTTCATCGGCCTGGCCCGGACCCTG
AAACTGCGCGGGCACCGCGTGAGCCTCTGCACCATCCCGGTGTTTCGCGACGCGGTGGAGCAGCACGGCATC
GCGTTTGTCCCGCTGAGCGACGAACTGACCTACCGCCGGACCATGGGCGATCCGCGCCTGTGGGACCCCAAG
ACGTCCTTCGGCGTGCTCTGGCAAGCCATCGCCGGGATGATCGAGCCGGTCTACGAGTACGTCTCGGCGCAG
CGCCATGACGACATCGTGGTGGTCGGCTCGCTATGGGCGCTGGGCGCACGCATCGCTCACGAGAAGTACGGG
ATTCCCTACCTGTCCGCGCAGGTCTCGCCATCGACCCTGTTGTCGGCGCACCTGCCGCCGGTACACCCCAAG
TTCAACGTGCCCGAGCAGATGCCGCTGGCGATGCGCAAGCTGCTCTGGCGCTGCATCGAGCGCTTCAAGCTG
GATCGCACCTGCGCGCCGGAGATCAACGCGGTGCGCCGCAAGGTCGGCCTGGAAACGCCGGTGAAGCGCATC
TTCACCCAATGGATGCATTCGCCGCAGGGCGTGGTCTGCCTGTTCCCGGCCTGGTTCGCGCCGCCCCAGCAG
GATTGGCCGCAACCCCTGCACATGACCGGCTTCCCGCTGTTCGACGGCAGTATCCCGGGGACCCCGCTCGAC
GACGAACTGCAACGCTTTCTCGATCAGGGCAGCCGGCCGCTGGTGTTCACCCAGGGCTCGACCGAACACCTG
CAGGGCGACTTCTACGCCATGGCCCTGCGCGCGCTGGAACGCCTCGGCGCGCGTGGGATCTTCCTCACCGGC
GCCGGCCAGGAACCGCTGCGCGGCTTGCCGAACCACGTGCTGCAGCGCGCCTACGCGCCACTGGGAGCCTTG
CTGCCATCGTGCGCCGGGCTGGTCCATCCGGGCGGTATCGGCGCCATGAGCCTAGCCTTGGCGGCGGGGGTG
CCGCAGGTGCTGCTGCCCTGTGCCCACGACCAGTTCGACAATGCCGAACGGCTGGTCCGGCTCGGCTGCGGG
ATGCGCCTGGGCGTGCCGTTGCGCGAGCAGGAGTTGCGCGGGGCGCTGTGGCGCTTGCTCGAGGACCCGGCC
ATGGCGGCGGCCTGTCGGCGTTTCATGGAATTGTCACAACCGCACAGTATCGCTTGCGGTAAAGCGGCCCAG
GTGGTCGAACGTTGTCATAGGGAGGGGGATGCTCGATGGCTGAAGGCTGCGTCCTGA
Translation:
MHAILIAIGSAGDVFPFIGLARTLKLRGHRVSLCTIPVFRDAVEQHGIAFVPLSDELTYRRTMGDPRLWDPK
TSFGVLWQAIAGMIEPVYEYVSAQRHDDIVVVGSLWALGARIAHEKYGIPYLSAQVSPSTLLSAHLPPVHPK
FNVPEQMPLAMRKLLWRCIERFKLDRTCAPEINAVRRKVGLETPVKRIFTQWMHSPQGVVCLFPAWFAPPQQ
DWPQPLHMTGFPLFDGSIPGTPLDDELQRFLDQGSRPLVFTQGSTEHLQGDFYAMALRALERLGARGIFLTG
AGQEPLRGLPNHVLQRAYAPLGALLPSCAGLVHPGGIGAMSLALAAGVPQVLLPCAHDQFDNAERLVRLGCG
MRLGVPLREQELRGALWRLLEDPAMAAACRRFMELSQPHSIACGKAAQVVERCHREGDARWLKAAS*
AnnotationID:1168GeneID:1159
AnnotatorUID: diggins
Modification Date/Time: 2005-04-19 11:11:35
Gene Name:rhlB
Confidence Code:1
GeneProduct:rhamnosyltransferase chain B
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(23) Secreted Factors (toxins, enzymes, alginate)
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1819
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
COG1819, COG1819, Glycosyl transferases, 
related to UDP-glucuronosyltransferase 
[Carbohydrate transport and metabolism / 
Signal transduction mechanisms]
CD-Length = 406 residues,  99.8% aligned
Score =  268 bits (687), Expect = 7e-73
Identities = 112/422 (26%), Positives = 169/422 (40%), Gaps = 18/422 (4%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:2321




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19463




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32081




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1159_cdd.html


    		




 
URL:

















    ReferenceID:34097




  
Author/Investigator(s):
        Ochsner UA, Fiechter A, Reiser J.





  
Title:
         
Isolation, characterization, and expression in Escherichia coli of the Pseudomonas aeruginosa rhlAB genes encoding a rhamnosyltransferase involved in rhamnolipid biosurfactant synthesis.




  
PubMed:
        8051059


MedLine:
        




    
Source:
J Biol Chem. 1994 Aug 5;269(31):19787-95.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8051059

















    ReferenceID:34098




  
Author/Investigator(s):
        Medina G, Juarez K, Diaz R, Soberon-Chavez G.





  
Title:
        Transcriptional regulation of Pseudomonas aeruginosa rhlR, encoding a quorum-sensing regulatory protein.




  
PubMed:
        14600219


MedLine:
        




    
Source:
Microbiology. 2003 Nov;149(Pt 11):3073-81.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14600219









           
Homologs By Global Alignment 

           

       



     
Gene ID:1159
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2086
                           PA3478_tr
                           translation of PA3478
                           426
                           99.99
                           99.99
                           0
                           2266.0
     

     
     
69763
                           gb|AAG06866.1|AE004768_11
                           (AE004768) rhamnosyltransferase chain B [Pseudomonas aeruginosa PAO1]
                           426
                           99.99
                           99.99
                           0
                           2266.0
     

     
     
69764
                           gb|AAA62129.1|
                           (L28170) rhamnosyl transferase [Pseudomonas aeruginosa]
                           426
                           99.53
                           99.76
                           0
                           2259.0
     

     
     
69765
                           gb|AAC44035.1|
                           (U40458) RhlB [Pseudomonas aeruginosa]
                           426
                           11.03
                           11.03
                           379
                           249.0
     

     






      

          
GC ORFID: 44161How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3478Glimmer Score: 

          
Start: 3304348Stop: 3303068

          
Length: 1281


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3478 translation of PA3478Homolog Bit Score 877.0

          
Other Homologs:  t_PA3478 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCACGCCATCCTCATCGCCATCGGCTCGGCCGGCGACGTATTTCCCTTCATCGGCCTGGCCCGGACCCTG 
AAACTGCGCGGGCACCGCGTGAGCCTCTGCACCATCCCGGTGTTTCGCGACGCGGTGGAGCAGCACGGCATC 
GCGTTTGTCCCGCTGAGCGACGAACTGACCTACCGCCGGACCATGGGCGATCCGCGCCTGTGGGACCCCAAG 
ACGTCCTTCGGCGTGCTCTGGCAAGCCATCGCCGGGATGATCGAGCCGGTCTACGAGTACGTCTCGGCGCAG 
CGCCATGACGACATCGTGGTGGTCGGCTCGCTATGGGCGCTGGGCGCACGCATCGCTCACGAGAAGTACGGG 
ATTCCCTACCTGTCCGCGCAGGTCTCGCCATCGACCCTGTTGTCGGCGCACCTGCCGCCGGTACACCCCAAG 
TTCAACGTGCCCGAGCAGATGCCGCTGGCGATGCGCAAGCTGCTCTGGCGCTGCATCGAGCGCTTCAAGCTG 
GATCGCACCTGCGCGCCGGAGATCAACGCGGTGCGCCGCAAGGTCGGCCTGGAAACGCCGGTGAAGCGCATC 
TTCACCCAATGGATGCATTCGCCGCAGGGCGTGGTCTGCCTGTTCCCGGCCTGGTTCGCGCCGCCCCAGCAG 
GATTGGCCGCAACCCCTGCACATGACCGGCTTCCCGCTGTTCGACGGCAGTATCCCGGGGACCCCGCTCGAC 
GACGAACTGCAACGCTTTCTCGATCAGGGCAGCCGGCCGCTGGTGTTCACCCAGGGCTCGACCGAACACCTG 
CAGGGCGACTTCTACGCCATGGCCCTGCGCGCGCTGGAACGCCTCGGCGCGCGTGGGATCTTCCTCACCGGC 
GCCGGCCAGGAACCGCTGCGCGGCTTGCCGAACCACGTGCTGCAGCGCGCCTACGCGCCACTGGGAGCCTTG 
CTGCCATCGTGCGCCGGGCTGGTCCATCCGGGCGGTATCGGCGCCATGAGCCTAGCCTTGGCGGCGGGGGTG 
CCGCAGGTGCTGCTGCCCTGTGCCCACGACCAGTTCGACAATGCCGAACGGCTGGTCCGGCTCGGCTGCGGG 
ATGCGCCTGGGCGTGCCGTTGCGCGAGCAGGAGTTGCGCGGGGCGCTGTGGCGCTTGCTCGAGGACCCGGCC 
ATGGCGGCGGCCTGTCGGCGTTTCATGGAATTGTCACAACCGCACAGTATCGCTTGCGGTAAAGCGGCCCAG 
GTGGTCGAACGTTGTCATAGGGAGGGGGATGCTCGATGGCTGAAGGCTGCGTCCTGA